Rh7DG331400

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000334
Physical Location & Seq
Reverse (-)
40455350 .. 40455532
183 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG331400.1

Sequence Viewer

Length: 183 bp
ATGGCGGCGAGTGTTGCGACGGTGCAGGGCCAGTCGGACCAGGTCCCCAGATGGAACTCCGGCCTTAACTCGTTTCAGCTCAGCCGAAGGCAATCAAGCGGGGACGCCTTGTCTGATCTCCTGACCTTATCTGGCGGAGCCGGGTCTGGTTTTTCCTACGGAGGAGGGAAGTGGAAAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3774

Protein Analysis

60

Amino Acids

6.18

Weight (kDa)

9.69

Isoelectric Point (pI)

58.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3774 PF12609 1 - 37 4.3e-07 Wound-induced protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28240
fragaria_vesca FvH4_3g03881 FvH4_3g03882 FvH4_3g39481 FvH4_3g39491 FvH4_4g25661 FvH4_5g02870 FvH4_5g34303 FvH4_5g34304 FvH4_6g24132 FvH4_6g44490 FvH4_6g44501 FvH4_6g44545 FvH4_6g44841
malus_domestica MD09G1090300.v1.1 MD09G1096600.v1.1 MD17G1084800.v1.1 MD17G1084900.v1.1
prunus_persica Prupe.1G064500_v2.0.a1 Prupe.3G230300_v2.0.a1 Prupe.3G230400_v2.0.a1 Prupe.3G230500_v2.0.a1 Prupe.3G230600_v2.0.a1 Prupe.3G230700_v2.0.a1 Prupe.3G230900_v2.0.a1 Prupe.4G037900_v2.0.a1
pyrus_communis pycom09g02100 pycom17g08220
rosa_chinensis RchiOBHm_Chr2g0161551 RchiOBHm_Chr2g0161661 RchiOBHm_Chr2g0161721 RchiOBHm_Chr2g0161751 RchiOBHm_Chr5g0006151 RchiOBHm_Chr5g0006161 RchiOBHm_Chr5g0071201 RchiOBHm_Chr7g0234891
rosa_laevigata RLG00000003965 RLG00000021291 RLG00000021295 RLG00000023183 RLG00000031379 RLG00000032398 RLG00000036195
rosa_multiflora Rmu_sc0000039.1_g000008 Rmu_sc0000637.1_g000006 Rmu_sc0007000.1_g000002 Rmu_sc0009339.1_g000009 Rmu_sc0027757.1_g000001 Rmu_sc0042097.1_g000001
rosa_roxburghii Rroxscaffold_1G00009880 Rroxscaffold_1G00069840 Rroxscaffold_1G00069850 Rroxscaffold_2G00088370 Rroxscaffold_2G00088630 Rroxscaffold_2G00088650 Rroxscaffold_2G00088660 Rroxscaffold_2G00088670 Rroxscaffold_2G00088680 Rroxscaffold_2G00088710 Rroxscaffold_3G00226660 Rroxscaffold_3G00226670 Rroxscaffold_3G00258720
rosa_rugosa Rorug02G0490500 Rorug02G0490600 Rorug02G0491600 Rorug02G0491800 Rorug02G0491800 Rorug02G0494100 Rorug05G0410900 Rorug07G0037000 Rorug07G0286000
rosa_samantha Rh2AG157300 Rh2AG556800 Rh2AG557500 Rh2AG557800 Rh2AG560100 Rh2BG163600 Rh2BG391200 Rh2BG570100 Rh2BG570600 Rh2BG571000 Rh2BG571100 Rh2BG571400 Rh2CG540600 Rh2CG541100 Rh2CG541400 Rh2CG541500 Rh2CG543700 Rh2DG162500 Rh2DG580000 Rh2DG580200 Rh2DG580300 Rh5AG047700 Rh5AG047800 Rh5BG046400 Rh5BG485500 Rh5CG055100 Rh5CG055200 Rh5CG510000 Rh5DG046200 Rh5DG496700 Rh7AG440700 Rh7AG468400 Rh7BG164100 Rh7BG413500 Rh7BG413600 Rh7CG170200 Rh7CG462400 Rh7CG462500 Rh7DG331400 Rh7DG430400
rosa_wichuraiana Rw2G046080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 5, 99, 135
AcyI GRCGYC 1 cut(s) 105
AhdI GACNNNNNGTC 1 cut(s) 109
AjnI CCWGG 1 cut(s) 39
AluBI AGCT 1 cut(s) 79
AluI AGCT 1 cut(s) 79
AoxI GGCC 2 cut(s) 28, 61
AspS9I GGNCC 3 cut(s) 28, 37, 43
AsuC2I CCSGG 1 cut(s) 142
AvaII GGWCC 2 cut(s) 37, 43
BccI CCATC 1 cut(s) 45
BciT130I CCWGG 1 cut(s) 41
BcnI CCSGG 1 cut(s) 142
BisI GCNGC 1 cut(s) 6
BlpI GCTNAGC 1 cut(s) 80
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 2 cut(s) 41, 142
Bme18I GGWCC 2 cut(s) 37, 43
BmeRI GACNNNNNGTC 1 cut(s) 109
BmgT120I GGNCC 3 cut(s) 28, 37, 43
BmiI GGNNCC 2 cut(s) 45, 139
BmrFI CCNGG 2 cut(s) 41, 142
Bpu1102I GCTNAGC 1 cut(s) 80
BpuMI CCSGG 1 cut(s) 142
BsaHI GRCGYC 1 cut(s) 105
Bse1I ACTGG 1 cut(s) 31
BseBI CCWGG 1 cut(s) 41
BseMII CTCAG 1 cut(s) 94
BseNI ACTGG 1 cut(s) 31
BseRI GAGGAG 1 cut(s) 177
BsgI GTGCAG 1 cut(s) 44
BshFI GGCC 2 cut(s) 30, 63
BsiSI CCGG 2 cut(s) 60, 141
BslFI GGGAC 2 cut(s) 29, 116
BsmFI GGGAC 2 cut(s) 29, 116
BsnI GGCC 2 cut(s) 30, 63
Bsp143I GATC 1 cut(s) 115
Bsp1720I GCTNAGC 1 cut(s) 80
BspACI CCGC 3 cut(s) 5, 99, 135
BspANI GGCC 2 cut(s) 30, 63
BspCNI CTCAG 1 cut(s) 93
BspLI GGNNCC 2 cut(s) 45, 139
BsrI ACTGG 1 cut(s) 31
BssMI GATC 1 cut(s) 115
BssNI GRCGYC 1 cut(s) 105
Bst2UI CCWGG 1 cut(s) 41
Bst4CI ACNGT 1 cut(s) 22
BstACI GRCGYC 1 cut(s) 105
BstDEI CTNAG 1 cut(s) 80
BstKTI GATC 1 cut(s) 118
BstMBI GATC 1 cut(s) 115
BstMWI GCNNNNNNNGC 1 cut(s) 14
BstNI CCWGG 1 cut(s) 41
BstSCI CCNGG 2 cut(s) 39, 140
BsuRI GGCC 2 cut(s) 30, 63
Cfr13I GGNCC 3 cut(s) 28, 37, 43
CseI GACGC 1 cut(s) 113
CsiI ACCWGGT 1 cut(s) 39
CviJI RGCY 5 cut(s) 30, 63, 79, 84, 140
CviKI_1 RGCY 5 cut(s) 30, 63, 79, 84, 140
DdeI CTNAG 1 cut(s) 80
DpnI GATC 1 cut(s) 117
DpnII GATC 1 cut(s) 115
DriI GACNNNNNGTC 1 cut(s) 109
Eam1105I GACNNNNNGTC 1 cut(s) 109
EciI GGCGGA 1 cut(s) 150
Eco47I GGWCC 2 cut(s) 37, 43
EcoO109I RGGNCCY 1 cut(s) 43
EcoRII CCWGG 1 cut(s) 39
FaqI GGGAC 2 cut(s) 29, 116
FauI CCCGC 1 cut(s) 92
Fnu4HI GCNGC 1 cut(s) 6
Fsp4HI GCNGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 6
HaeIII GGCC 2 cut(s) 30, 63
HapII CCGG 2 cut(s) 60, 141
HgaI GACGC 1 cut(s) 113
Hin1I GRCGYC 1 cut(s) 105
HpaII CCGG 2 cut(s) 60, 141
Hpy188I TCNGA 2 cut(s) 37, 115
Hpy188III TCNNGA 1 cut(s) 121
Hpy99I CGWCG 1 cut(s) 22
HpyAV CCTTC 1 cut(s) 81
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4V TGCA 1 cut(s) 25
HpyF10VI GCNNNNNNNGC 1 cut(s) 14
HpyF3I CTNAG 1 cut(s) 80
Hsp92I GRCGYC 1 cut(s) 105
Kzo9I GATC 1 cut(s) 115
LmnI GCTCC 1 cut(s) 137
MabI ACCWGGT 1 cut(s) 39
MalI GATC 1 cut(s) 117
MboI GATC 1 cut(s) 115
MmeI TCCRAC 1 cut(s) 15
MnlI CCTC 2 cut(s) 155, 158
MseI TTAA 1 cut(s) 66
MspI CCGG 2 cut(s) 60, 141
MspR9I CCNGG 2 cut(s) 41, 142
MvaI CCWGG 1 cut(s) 41
MwoI GCNNNNNNNGC 1 cut(s) 14
NciI CCSGG 1 cut(s) 142
NdeII GATC 1 cut(s) 115
NlaIV GGNNCC 2 cut(s) 45, 139
PflFI GACNNNGTC 1 cut(s) 41
PkrI GCNGC 1 cut(s) 7
PpuMI RGGWCCY 1 cut(s) 43
Psp5II RGGWCCY 1 cut(s) 43
Psp6I CCWGG 1 cut(s) 39
PspGI CCWGG 1 cut(s) 39
PspN4I GGNNCC 2 cut(s) 45, 139
PspPI GGNCC 3 cut(s) 28, 37, 43
PspPPI RGGWCCY 1 cut(s) 43
PsyI GACNNNGTC 1 cut(s) 41
SaqAI TTAA 1 cut(s) 66
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 1 cut(s) 115
Sau96I GGNCC 3 cut(s) 28, 37, 43
ScrFI CCNGG 2 cut(s) 41, 142
SetI ASST 3 cut(s) 45, 81, 128
SexAI ACCWGGT 1 cut(s) 39
SinI GGWCC 2 cut(s) 37, 43
SsiI CCGC 3 cut(s) 5, 99, 135
StyD4I CCNGG 2 cut(s) 39, 140
TaaI ACNGT 1 cut(s) 22
TauI GCSGC 1 cut(s) 8
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TspGWI ACGGA 1 cut(s) 174
Tth111I GACNNNGTC 1 cut(s) 41
VpaK11BI GGWCC 2 cut(s) 37, 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.