FvH4_5g02930

BTB POZ domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0013310
Physical Location & Seq
Forward (+)
1752957 .. 1757229
4273 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g02930.t2

Sequence Viewer

Length: 1851 bp
ATGGCAACAGCCTCATCTACTTCTACTTCTACTAGTGTAGCTCCTCTCAAACCTCACACGCATCCACAACAACAGCAACCCGCAAAGTCCAGACGCCGCAACCCGACCCGGAAACTCGACCCGCCGACGATCGTCTCCCCCACCCAGAACTCCTGGTGCTGCCCTGCCAAACCCGTCCCGACCCAATCCCATTCCCGCCGCGGCGACCCGACCCACGAGCCCGACCCGGTTCAGAACTACCCATCTCCGGACTCTTCTTCGCTGTCTTCGTCGTCGTTCAGGATCCGATATTCTCCGGGGAGCTTATCCCCAGTGATGGACTTCACTCCGGCACTGACCAACGGCCAAAACGATTCGTTTAACTCGAGCTTCACTCGCTTCAACAGCATGCTCACGGCGGGGCTGCTCAACCCAATGTCGCCGCCGCCGCGCTCCAGCCCGACCCTCTTCGAAATGATGTCCAGCGAGCCCGAAATGGCCAACCCGAAACCCGCCCAGATCCACCAAAACGGCGTCGTCGCGCCGCCGAGGACCGGTCTGGTCCAGGACAAGCAGGCCCTTATGATGCAGCGGGTCTCGGACCTCTTGGGTTCTCGGAGCCCCGGGAGCCAGTTTAACGACCCGACCAACAGTGACATCAAGCTGACGTTGGGCGCCAAAGACGGGTTCAGTGTCTCGATGAGTCTGCACCGTCCGATTCTCATCGCGCACAGCAGGTTCTTCGCCGTGAAACTCTCGGAGAGGTGGGTTAAGCAGCAGAGAACGGCGGCGAGTTCTCCGCCGTATAATGTGGAGATTGCGGACTGTGATGACGTGGAGGTTTACATTGAGGCTTTGAGGTTGATGTATTGTAAGGATCTGAGGAAGAGACTGATGAAGGAGGATGTTACTAGAGTGCTTGGGATTCTAAAGGTTTCAGCGGCAATTGGGTTTGATGCTGGTGTTTTGTCGTGCTTGGAGTACTTGGAGGCGGCGCCGTGGGCAGAGGATGAAGAGGAGAAGGTGGCATCGCTGTTGTCGGAGCTGCGGCTTGAAGGAGTTGGAGCTGGGGAAGTGTTGAAGAGGGTGTCGTTGGAAGTGGCTAATGGGACTGAGGAGGGTAATGACAATGAGGAAGTTTTGGTGAAGCTTCTGCATGTGGTTCTTGAAGGAAAAGATGAGAAGGCGAGGCGGGAGATGAAAGGGTTGGTGACTAAGATGCTTCGTGAGAATTCGTCTCATAATGAGCTAAGGAAAGAGTCGTTGTATTCTGCTTGTGATGGGTGTTTGCAATTGCTTTGCCACCATTTTGCTCGGGCAGCAGAGTCGGACTTGAAAGATGTGGGACAGATTGCAAGGCAAGCGGATAATTTGCATTGGATTTTGGATATTTTGATTGATAGACAAATGGCTGAGGATTTCTTGAAAACATGGGCGTCTCAAACTGAGTTGTCTGAATCACATTCTAAAGTGGCTGCAGTTCATAGATATGAGGTTAGCAGAGTTACAGCTCGACTCTTTGTTGGGATTGGAAAGGGGCAGCTGTTGGCTTCCAAGGATGTTAGGTTTTTGCTTTTGCGTACATGGTTGGTGCCATTTTATGATGATTTTGGATGGATGAGGAGGGCATCAAAAGGCCTTGATAGGCACTTAATTGAGGATGGTCTAAGCAACACAATTCTTACACTGCCTTTAGCATGGCAACAAGAAATTTTGCTCGCTTGGTTTAATCGGTTCTTGAACTCTGGTGAAGATTGCCCAAATATACAAAGAGGATTTGAAGTTTGGTGGAGGAGGTCCTTTTGGAGGCGGAATGGGGAGCAGGAAAGACCACGGCCATTACGAATTACAGCTGCAACCATTGAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB

Protein Analysis

617

Amino Acids

69.12

Weight (kDa)

8.02

Isoelectric Point (pI)

59.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB-POZ_ANK-like PF25553 371 - 596 4.2e-64 BTB/POZ Ankyrin-like repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013310)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63850
fragaria_vesca FvH4_5g02930 FvH4_5g02930
malus_domestica MD06G1088400.v1.1 MD14G1109500.v1.1
prunus_persica Prupe.5G104400_v2.0.a1
pyrus_communis pycom06g08440 pycom14g10360
rosa_chinensis RchiOBHm_Chr7g0196961
rosa_laevigata RLG00000003977
rosa_multiflora Rmu_sc0001083.1_g000006
rosa_roxburghii Rroxscaffold_3G00258800
rosa_rugosa Rorug07G0037000
rosa_samantha Rh7AG161400 Rh7BG163600 Rh7CG169600 Rh7DG162900
rosa_wichuraiana Rw7G014120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 705
AccB1I GGYRCC 3 cut(s) 653, 973, 1570
AccII CGCG 4 cut(s) 201, 430, 521, 707
AccIII TCCGGA 1 cut(s) 247
AclWI GGATC 4 cut(s) 277, 290, 493, 864
AcoI YGGCCR 3 cut(s) 343, 477, 1814
AcsI RAATTY 2 cut(s) 1210, 1689
AcyI GRCGYC 5 cut(s) 94, 513, 654, 974, 1415
AfaI GTAC 2 cut(s) 962, 1561
AfiI CCNNNNNNNGG 5 cut(s) 247, 316, 533, 663, 1785
AgeI ACCGGT 1 cut(s) 533
AgsI TTSAA 8 cut(s) 382, 1034, 1060, 1148, 1315, 1405, 1720, 1760
AhlI ACTAGT 1 cut(s) 32
AjiI CACGTC 1 cut(s) 814
AjnI CCWGG 2 cut(s) 152, 543
AjuI GAANNNNNNNTTGG 2 cut(s) 650, 682
Alw26I GTCTC 6 cut(s) 139, 580, 679, 862, 1221, 1422
AlwI GGATC 4 cut(s) 277, 290, 493, 864
Ama87I CYCGRG 3 cut(s) 364, 602, 1293
Aor13HI TCCGGA 1 cut(s) 247
AoxI GGCC 5 cut(s) 343, 477, 555, 1615, 1814
ApeKI GCWGC 9 cut(s) 159, 403, 568, 754, 1024, 1298, 1454, 1519, 1832
ApoI RAATTY 2 cut(s) 1210, 1689
AsiGI ACCGGT 1 cut(s) 533
AspLEI GCGC 5 cut(s) 432, 523, 656, 709, 976
AspS9I GGNCC 5 cut(s) 531, 541, 556, 580, 1776
AsuC2I CCSGG 5 cut(s) 109, 227, 297, 603, 604
AsuHPI GGTGA 3 cut(s) 1135, 1201, 1739
AsuII TTCGAA 1 cut(s) 450
AvaI CYCGRG 3 cut(s) 364, 602, 1293
AvaII GGWCC 4 cut(s) 531, 541, 580, 1776
BalI TGGCCA 1 cut(s) 479
BamHI GGATCC 1 cut(s) 282
BanI GGYRCC 3 cut(s) 653, 973, 1570
BanII GRGCYC 3 cut(s) 222, 471, 602
BauI CACGAG 1 cut(s) 215
BbsI GAAGAC 1 cut(s) 258
BbvCI CCTCAGC 1 cut(s) 1392
BbvI GCAGC 9 cut(s) 146, 390, 580, 766, 1011, 1310, 1441, 1531, 1819
BccI CCATC 5 cut(s) 250, 310, 1253, 1587, 1634
BceAI ACGGC 8 cut(s) 358, 411, 526, 710, 766, 780, 961, 1829
BcgI CGANNNNNNTGC 6 cut(s) 667, 701, 703, 737, 1287, 1321
BciT130I CCWGG 2 cut(s) 154, 545
BcnI CCSGG 5 cut(s) 109, 227, 297, 603, 604
BcoDI GTCTC 6 cut(s) 139, 580, 679, 862, 1221, 1422
BcuI ACTAGT 1 cut(s) 32
BfaI CTAG 2 cut(s) 33, 891
BfmI CTRYAG 1 cut(s) 1455
BfoI RGCGCY 2 cut(s) 657, 977
BfuAI ACCTGC 1 cut(s) 705
BmcAI AGTACT 1 cut(s) 962
Bme1390I CCNGG 7 cut(s) 109, 154, 227, 297, 545, 603, 604
Bme18I GGWCC 4 cut(s) 531, 541, 580, 1776
BmeT110I CYCGRG 3 cut(s) 364, 602, 1293
BmgBI CACGTC 1 cut(s) 814
BmgT120I GGNCC 5 cut(s) 531, 541, 556, 580, 1776
BmiI GGNNCC 6 cut(s) 284, 599, 608, 655, 975, 1572
BmrFI CCNGG 7 cut(s) 109, 154, 227, 297, 545, 603, 604
BmrI ACTGGG 1 cut(s) 305
BmsI GCATC 6 cut(s) 70, 555, 925, 1016, 1188, 1616
BmuI ACTGGG 1 cut(s) 305
BoxI GACNNNNGTC 1 cut(s) 131
BpiI GAAGAC 1 cut(s) 258
BplI GAGNNNNNCTC 2 cut(s) 358, 390
BpmI CTGGAG 1 cut(s) 418
Bpu10I CCTNAGC 2 cut(s) 1229, 1392
Bpu14I TTCGAA 1 cut(s) 450
BpuMI CCSGG 5 cut(s) 109, 227, 297, 603, 604
BsaBI GATNNNNATC 1 cut(s) 701
BsaHI GRCGYC 5 cut(s) 94, 513, 654, 974, 1415
BsaI GGTCTC 1 cut(s) 580
BsaJI CCNNGG 8 cut(s) 199, 296, 527, 601, 602, 977, 1533, 1811
BsaWI WCCGGW 2 cut(s) 247, 533
Bsc4I CCNNNNNNNGG 5 cut(s) 247, 316, 533, 663, 1785
Bse118I RCCGGY 1 cut(s) 533
Bse1I ACTGG 2 cut(s) 311, 610
Bse8I GATNNNNATC 1 cut(s) 701
BseAI TCCGGA 1 cut(s) 247
BseBI CCWGG 2 cut(s) 154, 545
BseDI CCNNGG 8 cut(s) 199, 296, 527, 601, 602, 977, 1533, 1811
BseGI GGATG 7 cut(s) 61, 889, 994, 1543, 1598, 1602, 1645
BseJI GATNNNNATC 1 cut(s) 701
BseLI CCNNNNNNNGG 5 cut(s) 247, 316, 533, 663, 1785
BseMII CTCAG 4 cut(s) 851, 1083, 1383, 1416
BseNI ACTGG 2 cut(s) 311, 610
BseRI GAGGAG 5 cut(s) 33, 1010, 1109, 1615, 1786
BseXI GCAGC 9 cut(s) 146, 390, 580, 766, 1011, 1310, 1441, 1531, 1819
BseYI CCCAGC 1 cut(s) 1046
BsgI GTGCAG 1 cut(s) 671
Bsh1236I CGCG 4 cut(s) 201, 430, 521, 707
Bsh1285I CGRYCG 1 cut(s) 132
BshFI GGCC 5 cut(s) 345, 479, 557, 1617, 1816
BshNI GGYRCC 3 cut(s) 653, 973, 1570
BshTI ACCGGT 1 cut(s) 533
BsiEI CGRYCG 1 cut(s) 132
BsiHKCI CYCGRG 3 cut(s) 364, 602, 1293
BsiSI CCGG 7 cut(s) 109, 227, 248, 296, 329, 534, 603
BslFI GGGAC 3 cut(s) 161, 1102, 1338
BslI CCNNNNNNNGG 5 cut(s) 247, 316, 533, 663, 1785
BsmAI GTCTC 6 cut(s) 139, 580, 679, 862, 1221, 1422
BsmBI CGTCTC 3 cut(s) 139, 1221, 1422
BsmFI GGGAC 3 cut(s) 161, 1102, 1338
BsnI GGCC 5 cut(s) 345, 479, 557, 1617, 1816
Bso31I GGTCTC 1 cut(s) 580
BsoBI CYCGRG 3 cut(s) 364, 602, 1293
Bsp119I TTCGAA 1 cut(s) 450
Bsp1286I GDGCHC 3 cut(s) 222, 471, 602
Bsp13I TCCGGA 1 cut(s) 247
Bsp143I GATC 4 cut(s) 129, 282, 498, 856
BspANI GGCC 5 cut(s) 345, 479, 557, 1617, 1816
BspCNI CTCAG 4 cut(s) 852, 1084, 1384, 1417
BspEI TCCGGA 1 cut(s) 247
BspFNI CGCG 4 cut(s) 201, 430, 521, 707
BspLI GGNNCC 6 cut(s) 284, 599, 608, 655, 975, 1572
BspMAI CTGCAG 1 cut(s) 1459
BspMI ACCTGC 1 cut(s) 705
BspPI GGATC 4 cut(s) 277, 290, 493, 864
BspT104I TTCGAA 1 cut(s) 450
BspT107I GGYRCC 3 cut(s) 653, 973, 1570
BspTNI GGTCTC 1 cut(s) 580
BsrFI RCCGGY 1 cut(s) 533
BsrI ACTGG 2 cut(s) 311, 610
BssAI RCCGGY 1 cut(s) 533
BssECI CCNNGG 8 cut(s) 199, 296, 527, 601, 602, 977, 1533, 1811
BssMI GATC 4 cut(s) 129, 282, 498, 856
BssNI GRCGYC 5 cut(s) 94, 513, 654, 974, 1415
BssSI CACGAG 1 cut(s) 215
BssT1I CCWWGG 1 cut(s) 1533
Bst2BI CACGAG 1 cut(s) 215
Bst2UI CCWGG 2 cut(s) 154, 545
Bst4CI ACNGT 3 cut(s) 632, 692, 806
Bst6I CTCTTC 5 cut(s) 259, 452, 860, 987, 1055
BstACI GRCGYC 5 cut(s) 94, 513, 654, 974, 1415
BstBI TTCGAA 1 cut(s) 450
BstC8I GCNNGC 5 cut(s) 389, 467, 555, 1341, 1698
BstDEI CTNAG 7 cut(s) 860, 1092, 1194, 1229, 1392, 1425, 1646
BstDSI CCRYGG 3 cut(s) 199, 977, 1811
BstENI CCTNNNNNAGG 1 cut(s) 1783
BstF5I GGATG 7 cut(s) 61, 889, 994, 1543, 1598, 1602, 1645
BstFNI CGCG 4 cut(s) 201, 430, 521, 707
BstH2I RGCGCY 2 cut(s) 657, 977
BstHHI GCGC 5 cut(s) 432, 523, 656, 709, 976
BstKTI GATC 4 cut(s) 132, 285, 501, 859
BstMAI GTCTC 6 cut(s) 139, 580, 679, 862, 1221, 1422
BstMBI GATC 4 cut(s) 129, 282, 498, 856
BstMCI CGRYCG 1 cut(s) 132
BstMWI GCNNNNNNNGC 7 cut(s) 375, 384, 427, 606, 980, 1298, 1340
BstNI CCWGG 2 cut(s) 154, 545
BstNSI RCATGY 2 cut(s) 391, 1139
BstPAI GACNNNNGTC 1 cut(s) 131
BstSCI CCNGG 7 cut(s) 107, 152, 225, 295, 543, 601, 602
BstSFI CTRYAG 1 cut(s) 1455
BstUI CGCG 4 cut(s) 201, 430, 521, 707
BstV1I GCAGC 9 cut(s) 146, 390, 580, 766, 1011, 1310, 1441, 1531, 1819
BstV2I GAAGAC 1 cut(s) 258
BstX2I RGATCY 3 cut(s) 282, 498, 856
BstYI RGATCY 3 cut(s) 282, 498, 856
BsuRI GGCC 5 cut(s) 345, 479, 557, 1617, 1816
BtgI CCRYGG 3 cut(s) 199, 977, 1811
BtgZI GCGATG 2 cut(s) 688, 993
BtrI CACGTC 1 cut(s) 814
BtsCI GGATG 7 cut(s) 61, 889, 994, 1543, 1598, 1602, 1645
BtsI GCAGTG 1 cut(s) 1664
BtsIMutI CAGTG 5 cut(s) 318, 332, 637, 676, 1664
BveI ACCTGC 1 cut(s) 705
Cac8I GCNNGC 5 cut(s) 389, 467, 555, 1341, 1698
CfoI GCGC 5 cut(s) 432, 523, 656, 709, 976
Cfr10I RCCGGY 1 cut(s) 533
Cfr13I GGNCC 5 cut(s) 531, 541, 556, 580, 1776
Cfr42I CCGCGG 1 cut(s) 202
Cfr9I CCCGGG 1 cut(s) 602
CseI GACGC 3 cut(s) 102, 502, 1404
Csp6I GTAC 2 cut(s) 961, 1560
CspAI ACCGGT 1 cut(s) 533
CviAII CATG 5 cut(s) 388, 1136, 1410, 1563, 1677
CviQI GTAC 2 cut(s) 961, 1560
DdeI CTNAG 7 cut(s) 860, 1092, 1194, 1229, 1392, 1425, 1646
DinI GGCGCC 2 cut(s) 655, 975
DpnI GATC 4 cut(s) 131, 284, 500, 858
DpnII GATC 4 cut(s) 129, 282, 498, 856
EaeI YGGCCR 3 cut(s) 343, 477, 1814
Eam1104I CTCTTC 5 cut(s) 259, 452, 860, 987, 1055
EarI CTCTTC 5 cut(s) 259, 452, 860, 987, 1055
EciI GGCGGA 2 cut(s) 768, 1804
Eco130I CCWWGG 1 cut(s) 1533
Eco147I AGGCCT 1 cut(s) 1617
Eco24I GRGCYC 3 cut(s) 222, 471, 602
Eco31I GGTCTC 1 cut(s) 580
Eco47I GGWCC 4 cut(s) 531, 541, 580, 1776
Eco88I CYCGRG 3 cut(s) 364, 602, 1293
EcoNI CCTNNNNNAGG 1 cut(s) 1783
EcoO109I RGGNCCY 2 cut(s) 556, 1776
EcoRI GAATTC 1 cut(s) 1210
EcoRII CCWGG 2 cut(s) 152, 543
EcoT14I CCWWGG 1 cut(s) 1533
EcoT38I GRGCYC 3 cut(s) 222, 471, 602
EgeI GGCGCC 2 cut(s) 655, 975
EheI GGCGCC 2 cut(s) 655, 975
ErhI CCWWGG 1 cut(s) 1533
Esp3I CGTCTC 3 cut(s) 139, 1221, 1422
FaeI CATG 5 cut(s) 391, 1139, 1413, 1566, 1680
FaqI GGGAC 3 cut(s) 161, 1102, 1338
FatI CATG 5 cut(s) 387, 1135, 1409, 1562, 1676
FauI CCCGC 7 cut(s) 88, 129, 203, 391, 499, 564, 1164
FokI GGATG 7 cut(s) 48, 896, 1001, 1550, 1605, 1609, 1652
FriOI GRGCYC 3 cut(s) 222, 471, 602
FspBI CTAG 2 cut(s) 33, 891
GlaI GCGC 5 cut(s) 431, 522, 655, 708, 975
GsaI CCCAGC 1 cut(s) 1050
GsuI CTGGAG 1 cut(s) 418
HaeII RGCGCY 2 cut(s) 657, 977
HaeIII GGCC 5 cut(s) 345, 479, 557, 1617, 1816
HapII CCGG 7 cut(s) 109, 227, 248, 296, 329, 534, 603
HgaI GACGC 3 cut(s) 102, 502, 1404
HhaI GCGC 5 cut(s) 432, 523, 656, 709, 976
Hin1I GRCGYC 5 cut(s) 94, 513, 654, 974, 1415
Hin1II CATG 5 cut(s) 391, 1139, 1413, 1566, 1680
Hin6I GCGC 5 cut(s) 430, 521, 654, 707, 974
HinP1I GCGC 5 cut(s) 430, 521, 654, 707, 974
HindIII AAGCTT 1 cut(s) 1127
HinfI GANTC 9 cut(s) 251, 353, 682, 697, 904, 1238, 1304, 1436, 1494
HpaII CCGG 7 cut(s) 109, 227, 248, 296, 329, 534, 603
HphI GGTGA 3 cut(s) 1135, 1201, 1739
Hpy166II GTNNAC 1 cut(s) 823
Hpy188III TCNNGA 9 cut(s) 90, 178, 248, 280, 676, 1145, 1205, 1402, 1717
Hpy8I GTNNAC 1 cut(s) 823
Hpy99I CGWCG 5 cut(s) 130, 274, 277, 518, 521
HpyAV CCTTC 5 cut(s) 871, 994, 1028, 1142, 1156
HpyCH4III ACNGT 3 cut(s) 632, 692, 806
HpyCH4IV ACGT 2 cut(s) 647, 813
HpyCH4V TGCA 8 cut(s) 568, 688, 1135, 1270, 1334, 1354, 1457, 1835
HpyF10VI GCNNNNNNNGC 7 cut(s) 375, 384, 427, 606, 980, 1298, 1340
HpyF3I CTNAG 7 cut(s) 860, 1092, 1194, 1229, 1392, 1425, 1646
HpySE526I ACGT 2 cut(s) 647, 813
Hsp92I GRCGYC 5 cut(s) 94, 513, 654, 974, 1415
Hsp92II CATG 5 cut(s) 391, 1139, 1413, 1566, 1680
HspAI GCGC 5 cut(s) 430, 521, 654, 707, 974
KasI GGCGCC 2 cut(s) 653, 973
Kpn2I TCCGGA 1 cut(s) 247
KspI CCGCGG 1 cut(s) 202
Kzo9I GATC 4 cut(s) 129, 282, 498, 856
LmnI GCTCC 8 cut(s) 46, 300, 437, 597, 606, 1021, 1043, 1798
Lsp1109I GCAGC 9 cut(s) 146, 390, 580, 766, 1011, 1310, 1441, 1531, 1819
LweI GCATC 6 cut(s) 70, 555, 925, 1016, 1188, 1616
MaeI CTAG 2 cut(s) 33, 891
MaeII ACGT 2 cut(s) 647, 813
MaeIII GTNAC 4 cut(s) 632, 886, 1189, 1483
MalI GATC 4 cut(s) 131, 284, 500, 858
MboI GATC 4 cut(s) 129, 282, 498, 856
MboII GAAGA 9 cut(s) 246, 249, 258, 439, 712, 877, 1004, 1072, 1742
MfeI CAATTG 2 cut(s) 924, 1271
MflI RGATCY 3 cut(s) 282, 498, 856
MhlI GDGCHC 3 cut(s) 222, 471, 602
MlsI TGGCCA 1 cut(s) 479
MluCI AATT 8 cut(s) 924, 1210, 1271, 1348, 1632, 1656, 1689, 1824
MluNI TGGCCA 1 cut(s) 479
Mly113I GGCGCC 2 cut(s) 654, 974
MlyI GAGTC 5 cut(s) 245, 691, 1247, 1313, 1488
MmeI TCCRAC 4 cut(s) 999, 1021, 1053, 1287
Mox20I TGGCCA 1 cut(s) 479
MroI TCCGGA 1 cut(s) 247
MscI TGGCCA 1 cut(s) 479
MseI TTAA 5 cut(s) 360, 615, 750, 1631, 1707
MslI CAYNNNNRTG 1 cut(s) 1467
Msp20I TGGCCA 1 cut(s) 479
MspA1I CMGCKG 5 cut(s) 201, 571, 920, 1522, 1832
MspI CCGG 7 cut(s) 109, 227, 248, 296, 329, 534, 603
MspR9I CCNGG 7 cut(s) 109, 154, 227, 297, 545, 603, 604
MunI CAATTG 2 cut(s) 924, 1271
MvaI CCWGG 2 cut(s) 154, 545
MvnI CGCG 4 cut(s) 201, 430, 521, 707
MwoI GCNNNNNNNGC 7 cut(s) 375, 384, 427, 606, 980, 1298, 1340
NarI GGCGCC 2 cut(s) 654, 974
NciI CCSGG 5 cut(s) 109, 227, 297, 603, 604
NdeII GATC 4 cut(s) 129, 282, 498, 856
NlaIII CATG 5 cut(s) 391, 1139, 1413, 1566, 1680
NlaIV GGNNCC 6 cut(s) 284, 599, 608, 655, 975, 1572
NmeAIII GCCGAG 1 cut(s) 552
NmuCI GTSAC 2 cut(s) 632, 1189
NspI RCATGY 2 cut(s) 391, 1139
NspV TTCGAA 1 cut(s) 450
PaeI GCATGC 1 cut(s) 391
PaeR7I CTCGAG 1 cut(s) 364
PceI AGGCCT 1 cut(s) 1617
PcsI WCGNNNNNNNCGW 4 cut(s) 266, 348, 362, 1819
PfeI GAWTC 4 cut(s) 353, 697, 904, 1436
PfoI TCCNGGA 1 cut(s) 543
PinAI ACCGGT 1 cut(s) 533
Ple19I CGATCG 1 cut(s) 132
PleI GAGTC 5 cut(s) 245, 690, 1246, 1312, 1488
PluTI GGCGCC 2 cut(s) 657, 977
PpsI GAGTC 5 cut(s) 245, 690, 1246, 1312, 1488
PpuMI RGGWCCY 1 cut(s) 1776
PshAI GACNNNNGTC 1 cut(s) 131
Psp5II RGGWCCY 1 cut(s) 1776
Psp6I CCWGG 2 cut(s) 152, 543
PspFI CCCAGC 1 cut(s) 1046
PspGI CCWGG 2 cut(s) 152, 543
PspN4I GGNNCC 6 cut(s) 284, 599, 608, 655, 975, 1572
PspPI GGNCC 5 cut(s) 531, 541, 556, 580, 1776
PspPPI RGGWCCY 1 cut(s) 1776
PspXI VCTCGAGB 1 cut(s) 364
PstI CTGCAG 1 cut(s) 1459
PsuI RGATCY 3 cut(s) 282, 498, 856
PvuI CGATCG 1 cut(s) 132
PvuII CAGCTG 2 cut(s) 1522, 1832
RsaI GTAC 2 cut(s) 962, 1561
RsaNI GTAC 2 cut(s) 961, 1560
RseI CAYNNNNRTG 1 cut(s) 1467
SacII CCGCGG 1 cut(s) 202
SaqAI TTAA 5 cut(s) 360, 615, 750, 1631, 1707
Sau3AI GATC 4 cut(s) 129, 282, 498, 856
Sau96I GGNCC 5 cut(s) 531, 541, 556, 580, 1776
ScaI AGTACT 1 cut(s) 962
SchI GAGTC 5 cut(s) 245, 691, 1247, 1313, 1488
ScrFI CCNGG 7 cut(s) 109, 154, 227, 297, 545, 603, 604
SduI GDGCHC 3 cut(s) 222, 471, 602
SfaNI GCATC 6 cut(s) 70, 555, 925, 1016, 1188, 1616
SfcI CTRYAG 1 cut(s) 1455
SfoI GGCGCC 2 cut(s) 655, 975
Sfr274I CTCGAG 1 cut(s) 364
Sfr303I CCGCGG 1 cut(s) 202
SfuI TTCGAA 1 cut(s) 450
SgrBI CCGCGG 1 cut(s) 202
SinI GGWCC 4 cut(s) 531, 541, 580, 1776
SlaI CTCGAG 1 cut(s) 364
SmaI CCCGGG 1 cut(s) 604
SmiMI CAYNNNNRTG 1 cut(s) 1467
SmlI CTYRAG 1 cut(s) 364
SmoI CTYRAG 1 cut(s) 364
SpeI ACTAGT 1 cut(s) 32
SphI GCATGC 1 cut(s) 391
Sse9I AATT 8 cut(s) 924, 1210, 1271, 1348, 1632, 1656, 1689, 1824
SseBI AGGCCT 1 cut(s) 1617
SspDI GGCGCC 2 cut(s) 653, 973
SspMI CTAG 2 cut(s) 33, 891
StuI AGGCCT 1 cut(s) 1617
StyD4I CCNGG 7 cut(s) 107, 152, 225, 295, 543, 601, 602
StyI CCWWGG 1 cut(s) 1533
TaaI ACNGT 3 cut(s) 632, 692, 806
TaiI ACGT 2 cut(s) 650, 816
TaqI TCGA 5 cut(s) 117, 365, 450, 677, 1492
TasI AATT 8 cut(s) 924, 1210, 1271, 1348, 1632, 1656, 1689, 1824
TatI WGTACW 1 cut(s) 960
TfiI GAWTC 4 cut(s) 353, 697, 904, 1436
Tru1I TTAA 5 cut(s) 360, 615, 750, 1631, 1707
Tru9I TTAA 5 cut(s) 360, 615, 750, 1631, 1707
TscAI CASTG 5 cut(s) 318, 339, 637, 676, 1671
TseFI GTSAC 2 cut(s) 632, 1189
TseI GCWGC 9 cut(s) 159, 403, 568, 754, 1024, 1298, 1454, 1519, 1832
Tsp45I GTSAC 2 cut(s) 632, 1189
TspDTI ATGAA 4 cut(s) 890, 1005, 1193, 1451
TspMI CCCGGG 1 cut(s) 602
TspRI CASTG 5 cut(s) 318, 339, 637, 676, 1671
VpaK11BI GGWCC 4 cut(s) 531, 541, 580, 1776
XagI CCTNNNNNAGG 1 cut(s) 1783
XapI RAATTY 2 cut(s) 1210, 1689
XceI RCATGY 2 cut(s) 391, 1139
XhoI CTCGAG 1 cut(s) 364
XmaI CCCGGG 1 cut(s) 602
XspI CTAG 2 cut(s) 33, 891
ZrmI AGTACT 1 cut(s) 962
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.