MD06G1088400.v1.1

BTB POZ domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0013310
Physical Location & Seq
Forward (+)
21593923 .. 21596877
2955 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1088400.v1.1.491

Sequence Viewer

Length: 1995 bp
ATGTATATTTTTTTCTTTCCAATTTTTCAATATTTGATGGCAGCTGCAGCAACCCCAACAACAACTACTAGTAGCGCTAACATTACTGACCTCCATTCCCACACGAACCCAAGCAAAACCAGAGCTAAACACCGCAGGTGCCGCGACTCCACTAACCTATCTTCCCCACCTGCCGCCGCCGCCGCCGCCGCCGCACCACCCAACCCTGCTCGAAAGCTCGGCCCGCCCACCATTGTCTCATCCGAGAACACCTGGTGCTGTTTCGCCTCAAAAGACTCGAAACCCATCTCCGCCAAGCCACGCCTGGCGCAACCCATTAACCCTGATCATATACCCGACCCGGTTCAGACATACCCATCTGGGAAATCGCCTTCTTCTTCGCCGTCCTCGTTCCGGATCCGATTCGCTCCGGGTAGTCGCTCTCCGGTCATGGATTTTACTCCGGCGTTGACAAATGGCCATTCTGGTCAAAGAGATTCGTTTAATTCCGGCTTCAGCAGGTTCAATTCAATGCTCACGGCCGGGTTATTAAACCCCATGTCGCCGCCGCCGCAATCCGATAAGACGACCCTGTCCGAAATAATGGCTAACGAGCCGGAAATGGCCCAACCGAGATTCCCGATCCACCAGAACGGCGTCGGTTCGTCAAGCGGGCGCAAAACCCATGTGGGTTTGGTTCAGGACAAGCAGGCGTTGATGATGCAGCGGGTTTCCGATCTGCTGACGGAGAATCGGAGCCCCGGGAACCAGTTCAACGACCCGTCGAGCAGTGACATTAAGCTCACTCTTAGCTCCAAAGATGGGTTCAGCGTCTCGATGAATGTGCACCGTCAGATACTCGTCGCGCACAGTCGATTCTTCGCGGTGAAGCTCTCGGAGAGGTGGGTCAAGCAACAGAGGATGACGCTGTCGTCGTCGCCGCCGTACAATGTGGAGATTGCAGACTGTGATGACGTGGAGGTTTATATCGAGGCCTTGAGGTTGATGTACTGTAAGGATCTGAGGAGGTGGCTGATGAAGGAGGATGTTCCTAAAGTGCTTGGAATTTTGAAGGTTTCGGCAGCAATTGGATTCGATGCGGGTGTTTTATCTTGTTTAGAATACTTAGAAGCTGCCCCATGGGCTGAGGATGAAGAGGAGAAGGTGGCATCACTCATGTTTGAGCTCCGCCTCGAAGGCACTGGAGCAGGGGAAGTACTCAAGAGGATCTCTGTCGAAGTTGCCAATGGGGCTGAAGAGGGTAACGACAATGAAGAAGTTCTTGTAAAGCTTCTGCATGTGGTTCTTGAAGGCAAAGATGAGAAGGCAAGACGTGAGATGAAAGGATTGGTATCAAAGATGCTTCGTGAGAATTCATCTCATAATGATCTCCGGAAAGAGTCCTTGTACTCGGCTTGTGATGGGTGTTTGCAATTGCTTCGCCACCATTTTTCTCGGGCAGCAGAGTCAGACTTGCAAGACGTGGGTCAGATTGCAAGGCAAGCGGATAATTTGCATTGGATTTTGGATATTTTGATTGACAGACAAATGGCTGAAGAGTTCTTGGCAACATGGGCATCGCAAACTGAATTGTCTGAGGCGCATTCTAAAGTGGCTGCGGTTCATAGATACGAGATTAGCAGGGTTACTGCTCGTCTCTTTGTCGGGCTGGGAAAGGGGCAGCTATTGGTTTCCAAGGATGTGAGGTTCTTGCTTTTACGTACGTGGTTGGTCCCTTTTTACGATGATTTTGCTTGGATGAGGAGGGCGTCGAAGGGCCTGGACAGGCACTCAATTGAGGATGGTCTAAGTAACACAATCCTCACCCTGCCTTTAGCATGGCAGCAGGAAATTTTGCTGGCTTGGTTTAATCGGTTCTTGAACTCCGGTGAAGATTGCCCTAATATACAAAGAGGATTTGAAGTTTGGTGGAGGAGGGCCTTTTGGAGGCGGAATGGCGAGCAGGAAAGACCACGGCCATTACGGACTACAACTGCAACCATGGAGAACTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB

Protein Analysis

665

Amino Acids

74.37

Weight (kDa)

8.01

Isoelectric Point (pI)

56.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB-POZ_ANK-like PF25553 418 - 643 6.7e-63 BTB/POZ Ankyrin-like repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013310)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63850
fragaria_vesca FvH4_5g02930 FvH4_5g02930
malus_domestica MD06G1088400.v1.1 MD14G1109500.v1.1
prunus_persica Prupe.5G104400_v2.0.a1
pyrus_communis pycom06g08440 pycom14g10360
rosa_chinensis RchiOBHm_Chr7g0196961
rosa_laevigata RLG00000003977
rosa_multiflora Rmu_sc0001083.1_g000006
rosa_roxburghii Rroxscaffold_3G00258800
rosa_rugosa Rorug07G0037000
rosa_samantha Rh7AG161400 Rh7BG163600 Rh7CG169600 Rh7DG162900
rosa_wichuraiana Rw7G014120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 126, 178
AasI GACNNNNNNGTC 2 cut(s) 571, 910
Acc36I ACCTGC 3 cut(s) 126, 178, 489
AccB1I GGYRCC 1 cut(s) 138
AccII CGCG 3 cut(s) 144, 845, 863
AccIII TCCGGA 2 cut(s) 393, 1371
AclWI GGATC 5 cut(s) 391, 404, 616, 1005, 1214
AcoI YGGCCR 3 cut(s) 457, 519, 1955
AcsI RAATTY 3 cut(s) 1044, 1351, 1830
AcuI CTGAAG 3 cut(s) 478, 1254, 1554
AcyI GRCGYC 2 cut(s) 636, 1748
AdeI CACNNNGTG 1 cut(s) 255
AfaI GTAC 5 cut(s) 926, 989, 1197, 1388, 1702
AfeI AGCGCT 1 cut(s) 76
AfiI CCNNNNNNNGG 3 cut(s) 393, 801, 1926
AgsI TTSAA 8 cut(s) 29, 505, 510, 754, 1051, 1289, 1861, 1901
AhlI ACTAGT 1 cut(s) 68
AjiI CACGTC 3 cut(s) 955, 1313, 1462
AjnI CCWGG 3 cut(s) 251, 303, 1758
AjuI GAANNNNNNNTTGG 2 cut(s) 788, 820
AloI GAACNNNNNNTCC 2 cut(s) 1670, 1702
Alw21I GWGCWC 2 cut(s) 828, 1167
Alw26I GTCTC 3 cut(s) 241, 817, 1640
Alw44I GTGCAC 1 cut(s) 824
AlwI GGATC 5 cut(s) 391, 404, 616, 1005, 1214
Ama87I CYCGRG 2 cut(s) 740, 1434
Aor13HI TCCGGA 2 cut(s) 393, 1371
Aor51HI AGCGCT 1 cut(s) 76
AoxI GGCC 8 cut(s) 220, 457, 519, 603, 972, 1756, 1917, 1955
ApaLI GTGCAC 1 cut(s) 824
ApoI RAATTY 3 cut(s) 1044, 1351, 1830
Asp700I GAANNNNTTC 2 cut(s) 749, 1257
AspLEI GCGC 5 cut(s) 77, 310, 657, 847, 1582
AspS9I GGNCC 5 cut(s) 221, 604, 1711, 1756, 1917
AsuC2I CCSGG 5 cut(s) 341, 411, 523, 741, 742
AsuHPI GGTGA 3 cut(s) 877, 1795, 1880
AvaI CYCGRG 2 cut(s) 740, 1434
AvaII GGWCC 1 cut(s) 1711
BaeGI GKGCMC 1 cut(s) 828
BalI TGGCCA 1 cut(s) 459
BamHI GGATCC 1 cut(s) 396
BanI GGYRCC 1 cut(s) 138
BanII GRGCYC 2 cut(s) 740, 1167
Bbv12I GWGCWC 2 cut(s) 828, 1167
BbvCI CCTCAGC 1 cut(s) 1125
BccI CCATC 6 cut(s) 31, 293, 364, 794, 1394, 1775
BceAI ACGGC 5 cut(s) 367, 534, 649, 907, 1970
BcgI CGANNNNNNTGC 6 cut(s) 805, 839, 1400, 1434, 1712, 1746
BciT130I CCWGG 3 cut(s) 253, 305, 1760
BclI TGATCA 1 cut(s) 325
BcnI CCSGG 5 cut(s) 341, 411, 523, 741, 742
BcoDI GTCTC 3 cut(s) 241, 817, 1640
BcuI ACTAGT 1 cut(s) 68
BfaI CTAG 1 cut(s) 69
BfmI CTRYAG 1 cut(s) 45
BfoI RGCGCY 1 cut(s) 78
BfuAI ACCTGC 3 cut(s) 126, 178, 489
BglI GCCNNNNNGGC 3 cut(s) 1121, 1176, 1229
BmcAI AGTACT 1 cut(s) 1197
Bme1390I CCNGG 8 cut(s) 253, 305, 341, 411, 523, 741, 742, 1760
Bme18I GGWCC 1 cut(s) 1711
BmeT110I CYCGRG 2 cut(s) 740, 1434
BmgBI CACGTC 3 cut(s) 955, 1313, 1462
BmgT120I GGNCC 5 cut(s) 221, 604, 1711, 1756, 1917
BmiI GGNNCC 5 cut(s) 140, 398, 737, 746, 1713
BmrFI CCNGG 8 cut(s) 253, 305, 341, 411, 523, 741, 742, 1760
BmsI GCATC 5 cut(s) 690, 1066, 1157, 1329, 1565
BoxI GACNNNNGTC 1 cut(s) 1464
BpmI CTGGAG 1 cut(s) 1203
Bpu10I CCTNAGC 1 cut(s) 1125
BpuEI CTTGAG 2 cut(s) 997, 1184
BpuMI CCSGG 5 cut(s) 341, 411, 523, 741, 742
BsaAI YACGTR 2 cut(s) 1700, 1704
BsaBI GATNNNNATC 1 cut(s) 1330
BsaHI GRCGYC 2 cut(s) 636, 1748
BsaJI CCNNGG 6 cut(s) 739, 740, 1118, 1674, 1952, 1980
BsaWI WCCGGW 4 cut(s) 393, 424, 1371, 1865
Bsc4I CCNNNNNNNGG 3 cut(s) 393, 801, 1926
Bse1I ACTGG 2 cut(s) 748, 1186
Bse8I GATNNNNATC 1 cut(s) 1330
BseAI TCCGGA 2 cut(s) 393, 1371
BseBI CCWGG 3 cut(s) 253, 305, 1760
BseDI CCNNGG 6 cut(s) 739, 740, 1118, 1674, 1952, 1980
BseGI GGATG 7 cut(s) 239, 906, 1030, 1135, 1684, 1743, 1786
BseJI GATNNNNATC 1 cut(s) 1330
BseLI CCNNNNNNNGG 3 cut(s) 393, 801, 1926
BseMII CTCAG 3 cut(s) 992, 1116, 1566
BseNI ACTGG 2 cut(s) 748, 1186
BseRI GAGGAG 4 cut(s) 1018, 1151, 1756, 1927
BseSI GKGCMC 1 cut(s) 828
BseX3I CGGCCG 1 cut(s) 519
BseYI CCCAGC 1 cut(s) 1648
Bsh1236I CGCG 3 cut(s) 144, 845, 863
Bsh1285I CGRYCG 1 cut(s) 522
BshFI GGCC 8 cut(s) 222, 459, 521, 605, 974, 1758, 1919, 1957
BshNI GGYRCC 1 cut(s) 138
BsiEI CGRYCG 1 cut(s) 522
BsiHKAI GWGCWC 2 cut(s) 828, 1167
BsiHKCI CYCGRG 2 cut(s) 740, 1434
BsiWI CGTACG 1 cut(s) 1700
BslFI GGGAC 1 cut(s) 1697
BslI CCNNNNNNNGG 3 cut(s) 393, 801, 1926
BsmAI GTCTC 3 cut(s) 241, 817, 1640
BsmBI CGTCTC 2 cut(s) 817, 1640
BsmFI GGGAC 1 cut(s) 1697
BsmI GAATGC 1 cut(s) 1582
BsnI GGCC 8 cut(s) 222, 459, 521, 605, 974, 1758, 1919, 1957
BsoBI CYCGRG 2 cut(s) 740, 1434
Bsp1286I GDGCHC 3 cut(s) 740, 828, 1167
Bsp13I TCCGGA 2 cut(s) 393, 1371
Bsp143I GATC 7 cut(s) 325, 396, 621, 715, 997, 1206, 1366
Bsp19I CCATGG 2 cut(s) 1118, 1980
BspANI GGCC 8 cut(s) 222, 459, 521, 605, 974, 1758, 1919, 1957
BspCNI CTCAG 3 cut(s) 993, 1117, 1567
BspEI TCCGGA 2 cut(s) 393, 1371
BspFNI CGCG 3 cut(s) 144, 845, 863
BspLI GGNNCC 5 cut(s) 140, 398, 737, 746, 1713
BspMAI CTGCAG 1 cut(s) 49
BspMI ACCTGC 3 cut(s) 126, 178, 489
BspPI GGATC 5 cut(s) 391, 404, 616, 1005, 1214
BspT107I GGYRCC 1 cut(s) 138
BsrI ACTGG 2 cut(s) 748, 1186
BssECI CCNNGG 6 cut(s) 739, 740, 1118, 1674, 1952, 1980
BssMI GATC 7 cut(s) 325, 396, 621, 715, 997, 1206, 1366
BssNI GRCGYC 2 cut(s) 636, 1748
BssT1I CCWWGG 3 cut(s) 1118, 1674, 1980
Bst2UI CCWGG 3 cut(s) 253, 305, 1760
Bst4CI ACNGT 4 cut(s) 830, 851, 947, 992
Bst6I CTCTTC 3 cut(s) 1128, 1230, 1530
BstACI GRCGYC 2 cut(s) 636, 1748
BstBAI YACGTR 2 cut(s) 1700, 1704
BstC8I GCNNGC 6 cut(s) 224, 653, 690, 1482, 1839, 1940
BstDEI CTNAG 6 cut(s) 788, 1001, 1105, 1125, 1575, 1787
BstDSI CCRYGG 3 cut(s) 1118, 1952, 1980
BstENI CCTNNNNNAGG 1 cut(s) 1924
BstF5I GGATG 7 cut(s) 239, 906, 1030, 1135, 1684, 1743, 1786
BstFNI CGCG 3 cut(s) 144, 845, 863
BstH2I RGCGCY 1 cut(s) 78
BstHHI GCGC 5 cut(s) 77, 310, 657, 847, 1582
BstKTI GATC 7 cut(s) 328, 399, 624, 718, 1000, 1209, 1369
BstMAI GTCTC 3 cut(s) 241, 817, 1640
BstMBI GATC 7 cut(s) 325, 396, 621, 715, 997, 1206, 1366
BstMCI CGRYCG 1 cut(s) 522
BstNI CCWGG 3 cut(s) 253, 305, 1760
BstNSI RCATGY 1 cut(s) 1280
BstPAI GACNNNNGTC 1 cut(s) 1464
BstSCI CCNGG 8 cut(s) 251, 303, 339, 409, 521, 739, 740, 1758
BstSFI CTRYAG 1 cut(s) 45
BstSLI GKGCMC 1 cut(s) 828
BstSNI TACGTA 1 cut(s) 1700
BstUI CGCG 3 cut(s) 144, 845, 863
BstX2I RGATCY 3 cut(s) 396, 997, 1206
BstYI RGATCY 3 cut(s) 396, 997, 1206
BstZI CGGCCG 1 cut(s) 519
BsuRI GGCC 8 cut(s) 222, 459, 521, 605, 974, 1758, 1919, 1957
BtgI CCRYGG 3 cut(s) 1118, 1952, 1980
BtgZI GCGATG 1 cut(s) 1542
BtrI CACGTC 3 cut(s) 955, 1313, 1462
BtsCI GGATG 7 cut(s) 239, 906, 1030, 1135, 1684, 1743, 1786
BtsI GCAGTG 1 cut(s) 775
BtsIMutI CAGTG 2 cut(s) 775, 1179
BveI ACCTGC 3 cut(s) 126, 178, 489
Cac8I GCNNGC 6 cut(s) 224, 653, 690, 1482, 1839, 1940
CfoI GCGC 5 cut(s) 77, 310, 657, 847, 1582
Cfr13I GGNCC 5 cut(s) 221, 604, 1711, 1756, 1917
Cfr9I CCCGGG 1 cut(s) 740
CseI GACGC 4 cut(s) 625, 799, 913, 1737
CsiI ACCWGGT 1 cut(s) 251
Csp6I GTAC 5 cut(s) 925, 988, 1196, 1387, 1701
CviAII CATG 9 cut(s) 430, 538, 665, 1119, 1156, 1277, 1551, 1818, 1981
CviQI GTAC 5 cut(s) 925, 988, 1196, 1387, 1701
DdeI CTNAG 6 cut(s) 788, 1001, 1105, 1125, 1575, 1787
DpnI GATC 7 cut(s) 327, 398, 623, 717, 999, 1208, 1368
DpnII GATC 7 cut(s) 325, 396, 621, 715, 997, 1206, 1366
DraIII CACNNNGTG 1 cut(s) 255
DrdI GACNNNNNNGTC 2 cut(s) 571, 910
DseDI GACNNNNNNGTC 2 cut(s) 571, 910
EaeI YGGCCR 3 cut(s) 457, 519, 1955
EagI CGGCCG 1 cut(s) 519
Eam1104I CTCTTC 3 cut(s) 1128, 1230, 1530
EarI CTCTTC 3 cut(s) 1128, 1230, 1530
EciI GGCGGA 3 cut(s) 280, 1157, 1945
Ecl136II GAGCTC 1 cut(s) 1165
EclXI CGGCCG 1 cut(s) 519
Eco105I TACGTA 1 cut(s) 1700
Eco130I CCWWGG 3 cut(s) 1118, 1674, 1980
Eco147I AGGCCT 1 cut(s) 974
Eco24I GRGCYC 2 cut(s) 740, 1167
Eco47I GGWCC 1 cut(s) 1711
Eco47III AGCGCT 1 cut(s) 76
Eco52I CGGCCG 1 cut(s) 519
Eco53kI GAGCTC 1 cut(s) 1165
Eco57I CTGAAG 3 cut(s) 478, 1254, 1554
Eco88I CYCGRG 2 cut(s) 740, 1434
EcoICRI GAGCTC 1 cut(s) 1165
EcoNI CCTNNNNNAGG 1 cut(s) 1924
EcoO109I RGGNCCY 2 cut(s) 1756, 1917
EcoRI GAATTC 1 cut(s) 1351
EcoRII CCWGG 3 cut(s) 251, 303, 1758
EcoT14I CCWWGG 3 cut(s) 1118, 1674, 1980
EcoT38I GRGCYC 2 cut(s) 740, 1167
ErhI CCWWGG 3 cut(s) 1118, 1674, 1980
Esp3I CGTCTC 2 cut(s) 817, 1640
FaeI CATG 9 cut(s) 433, 541, 668, 1122, 1159, 1280, 1554, 1821, 1984
FalI AAGNNNNNCTT 2 cut(s) 1245, 1277
FaqI GGGAC 1 cut(s) 1697
FatI CATG 9 cut(s) 429, 537, 664, 1118, 1155, 1276, 1550, 1817, 1980
FauI CCCGC 4 cut(s) 231, 644, 699, 1072
FbaI TGATCA 1 cut(s) 325
FokI GGATG 7 cut(s) 226, 913, 1037, 1142, 1691, 1750, 1793
FriOI GRGCYC 2 cut(s) 740, 1167
FspBI CTAG 1 cut(s) 69
GlaI GCGC 5 cut(s) 76, 309, 656, 846, 1581
GsaI CCCAGC 1 cut(s) 1652
GsuI CTGGAG 1 cut(s) 1203
HaeII RGCGCY 1 cut(s) 78
HaeIII GGCC 8 cut(s) 222, 459, 521, 605, 974, 1758, 1919, 1957
HgaI GACGC 4 cut(s) 625, 799, 913, 1737
HhaI GCGC 5 cut(s) 77, 310, 657, 847, 1582
Hin1I GRCGYC 2 cut(s) 636, 1748
Hin1II CATG 9 cut(s) 433, 541, 668, 1122, 1159, 1280, 1554, 1821, 1984
Hin6I GCGC 5 cut(s) 75, 308, 655, 845, 1580
HinP1I GCGC 5 cut(s) 75, 308, 655, 845, 1580
HincII GTYRAC 1 cut(s) 450
HindII GTYRAC 1 cut(s) 450
HindIII AAGCTT 1 cut(s) 1268
HphI GGTGA 3 cut(s) 877, 1795, 1880
Hpy166II GTNNAC 2 cut(s) 450, 826
Hpy188III TCNNGA 9 cut(s) 394, 619, 680, 814, 1201, 1286, 1346, 1372, 1858
Hpy8I GTNNAC 2 cut(s) 450, 826
Hpy99I CGWCG 6 cut(s) 641, 766, 845, 916, 919, 1753
HpyAV CCTTC 8 cut(s) 381, 1012, 1045, 1135, 1169, 1283, 1297, 1747
HpyCH4III ACNGT 4 cut(s) 830, 851, 947, 992
HpyCH4IV ACGT 5 cut(s) 954, 1312, 1461, 1699, 1703
HpyF3I CTNAG 6 cut(s) 788, 1001, 1105, 1125, 1575, 1787
HpySE526I ACGT 5 cut(s) 954, 1312, 1461, 1699, 1703
Hsp92I GRCGYC 2 cut(s) 636, 1748
Hsp92II CATG 9 cut(s) 433, 541, 668, 1122, 1159, 1280, 1554, 1821, 1984
HspAI GCGC 5 cut(s) 75, 308, 655, 845, 1580
Kpn2I TCCGGA 2 cut(s) 393, 1371
Ksp22I TGATCA 1 cut(s) 325
Kzo9I GATC 7 cut(s) 325, 396, 621, 715, 997, 1206, 1366
LmnI GCTCC 5 cut(s) 412, 735, 797, 1170, 1184
LweI GCATC 5 cut(s) 690, 1066, 1157, 1329, 1565
MabI ACCWGGT 1 cut(s) 251
MaeI CTAG 1 cut(s) 69
MaeII ACGT 5 cut(s) 954, 1312, 1461, 1699, 1703
MaeIII GTNAC 4 cut(s) 770, 1241, 1624, 1790
MalI GATC 7 cut(s) 327, 398, 623, 717, 999, 1208, 1368
MboI GATC 7 cut(s) 325, 396, 621, 715, 997, 1206, 1366
MboII GAAGA 9 cut(s) 153, 366, 369, 850, 1145, 1247, 1265, 1547, 1883
MfeI CAATTG 3 cut(s) 1065, 1412, 1773
MflI RGATCY 3 cut(s) 396, 997, 1206
MhlI GDGCHC 3 cut(s) 740, 828, 1167
MlsI TGGCCA 1 cut(s) 459
MluNI TGGCCA 1 cut(s) 459
MlyI GAGTC 4 cut(s) 140, 269, 1388, 1454
Mox20I TGGCCA 1 cut(s) 459
MroI TCCGGA 2 cut(s) 393, 1371
MroXI GAANNNNTTC 2 cut(s) 749, 1257
MscI TGGCCA 1 cut(s) 459
MseI TTAA 5 cut(s) 318, 483, 530, 777, 1848
Msp20I TGGCCA 1 cut(s) 459
MspA1I CMGCKG 2 cut(s) 44, 706
MspR9I CCNGG 8 cut(s) 253, 305, 341, 411, 523, 741, 742, 1760
MunI CAATTG 3 cut(s) 1065, 1412, 1773
Mva1269I GAATGC 1 cut(s) 1582
MvaI CCWGG 3 cut(s) 253, 305, 1760
MvnI CGCG 3 cut(s) 144, 845, 863
NciI CCSGG 5 cut(s) 341, 411, 523, 741, 742
NcoI CCATGG 2 cut(s) 1118, 1980
NdeII GATC 7 cut(s) 325, 396, 621, 715, 997, 1206, 1366
NlaIII CATG 9 cut(s) 433, 541, 668, 1122, 1159, 1280, 1554, 1821, 1984
NlaIV GGNNCC 5 cut(s) 140, 398, 737, 746, 1713
NmeAIII GCCGAG 2 cut(s) 198, 1370
NmuCI GTSAC 1 cut(s) 770
NspI RCATGY 1 cut(s) 1280
PaqCI CACCTGC 2 cut(s) 126, 178
PceI AGGCCT 1 cut(s) 974
PcsI WCGNNNNNNNCGW 3 cut(s) 386, 911, 920
PctI GAATGC 1 cut(s) 1582
PdmI GAANNNNTTC 2 cut(s) 749, 1257
PfeI GAWTC 6 cut(s) 402, 476, 615, 730, 855, 1071
Pfl23II CGTACG 1 cut(s) 1700
PflFI GACNNNGTC 2 cut(s) 571, 907
PleI GAGTC 4 cut(s) 140, 269, 1387, 1453
PpsI GAGTC 4 cut(s) 140, 269, 1387, 1453
Ppu21I YACGTR 2 cut(s) 1700, 1704
PshAI GACNNNNGTC 1 cut(s) 1464
Psp124BI GAGCTC 1 cut(s) 1167
Psp6I CCWGG 3 cut(s) 251, 303, 1758
PspFI CCCAGC 1 cut(s) 1648
PspGI CCWGG 3 cut(s) 251, 303, 1758
PspLI CGTACG 1 cut(s) 1700
PspN4I GGNNCC 5 cut(s) 140, 398, 737, 746, 1713
PspPI GGNCC 5 cut(s) 221, 604, 1711, 1756, 1917
PstI CTGCAG 1 cut(s) 49
PsuI RGATCY 3 cut(s) 396, 997, 1206
PsyI GACNNNGTC 2 cut(s) 571, 907
PvuII CAGCTG 1 cut(s) 44
RsaI GTAC 5 cut(s) 926, 989, 1197, 1388, 1702
RsaNI GTAC 5 cut(s) 925, 988, 1196, 1387, 1701
SacI GAGCTC 1 cut(s) 1167
SaqAI TTAA 5 cut(s) 318, 483, 530, 777, 1848
Sau3AI GATC 7 cut(s) 325, 396, 621, 715, 997, 1206, 1366
Sau96I GGNCC 5 cut(s) 221, 604, 1711, 1756, 1917
ScaI AGTACT 1 cut(s) 1197
SchI GAGTC 4 cut(s) 140, 269, 1388, 1454
ScrFI CCNGG 8 cut(s) 253, 305, 341, 411, 523, 741, 742, 1760
SduI GDGCHC 3 cut(s) 740, 828, 1167
SexAI ACCWGGT 1 cut(s) 251
SfaNI GCATC 5 cut(s) 690, 1066, 1157, 1329, 1565
SfcI CTRYAG 1 cut(s) 45
SinI GGWCC 1 cut(s) 1711
SmaI CCCGGG 1 cut(s) 742
SmlI CTYRAG 2 cut(s) 976, 1199
SmoI CTYRAG 2 cut(s) 976, 1199
SnaBI TACGTA 1 cut(s) 1700
SpeI ACTAGT 1 cut(s) 68
SseBI AGGCCT 1 cut(s) 974
SspI AATATT 1 cut(s) 32
SspMI CTAG 1 cut(s) 69
SstI GAGCTC 1 cut(s) 1167
StuI AGGCCT 1 cut(s) 974
StyD4I CCNGG 8 cut(s) 251, 303, 339, 409, 521, 739, 740, 1758
StyI CCWWGG 3 cut(s) 1118, 1674, 1980
TaaI ACNGT 4 cut(s) 830, 851, 947, 992
TaiI ACGT 5 cut(s) 957, 1315, 1464, 1702, 1706
TatI WGTACW 3 cut(s) 987, 1195, 1386
TfiI GAWTC 6 cut(s) 402, 476, 615, 730, 855, 1071
Tru1I TTAA 5 cut(s) 318, 483, 530, 777, 1848
Tru9I TTAA 5 cut(s) 318, 483, 530, 777, 1848
TscAI CASTG 2 cut(s) 775, 1186
TseFI GTSAC 1 cut(s) 770
Tsp45I GTSAC 1 cut(s) 770
TspDTI ATGAA 7 cut(s) 833, 1031, 1146, 1266, 1334, 1344, 1592
TspGWI ACGGA 2 cut(s) 740, 1978
TspMI CCCGGG 1 cut(s) 740
TspRI CASTG 2 cut(s) 775, 1186
Tth111I GACNNNGTC 2 cut(s) 571, 907
VneI GTGCAC 1 cut(s) 824
VpaK11BI GGWCC 1 cut(s) 1711
XagI CCTNNNNNAGG 1 cut(s) 1924
XapI RAATTY 3 cut(s) 1044, 1351, 1830
XceI RCATGY 1 cut(s) 1280
XcmI CCANNNNNNNNNTGG 1 cut(s) 301
XmaI CCCGGG 1 cut(s) 740
XmnI GAANNNNTTC 2 cut(s) 749, 1257
XspI CTAG 1 cut(s) 69
ZrmI AGTACT 1 cut(s) 1197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.