AT1G64500

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014483
Physical Location & Seq
Forward (+)
23953099 .. 23954610
1512 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G64500.1

Sequence Viewer

Length: 1107 bp
ATGGGGTGTACATCTTCCAAGCAAGCAAAAGCTAACGTCGTCGCCGACGTTTACAAACCACCGCCGTCTAGTTTCGCGGTGTTTGATGTCAACGCCATCCAAGAGCCATGGCTAAAATTTGAACATGAAGATGATGAGAAACCGCCACGCTCCACCGTCTTCGACCGTCTCGACGAGGATGATGATGATGATGATGATGATGGTGATGACGCTCCTAAAACATGGGAAGAAGTCAGCAAATCTCTAGAAACTAAACTTAAACCTGCCGCCGTTAAACCGCCGGAAGTAGACTCTGTTAAACCTCCGGCGACTCCTCCACGGCGGCTTCCGCGGAAGAGCGCATCGTTCCACACACTGGACGAGCTTGAAGTGAGGGCCAAAAGAAGCATCGCCGCGCAAATCCCGACGACAATGGTTAAGCTTAAGAGAACCGAGTCGATGTCCAAGCTAAGACCCGAGTCAGATGATCGAACCGAGTCCACTCAGTCGTCCTACTCGGGGCCTCGGTCAGTGAAGGAGAACATATTCGTCAAGAGAGACAGAGAACGGAGGGAGAAAGAAGGGAACAAGAAGCCGGTGATGAACTGGGACCCACTTAGGGAGTTCCCGGAGAAGTGTCCGCCGGGAGGAGGGGAAGGTTTGATTGTCTACACGACGTCGTTGCAAGGAGTGCGTCGCACGTACGAGGATTGTATGCGTGTGAGGGCCATCATGGAGCAGCAAGGAGTTGTGGTGGACGAGAGGGACGTGTCTTTAGACGCCGGAGTCTTGAGCGAGCTTAAGGAGCTTCTCCAAGACGAAGCATCAGTGGCGCCGCCGCGAGTGTTTGTGAAAGGGAGGTACTTGGGAGGAGCAGCGGAAGTGACAGCGATGAATGAGAACGGGAAGTTAGGGAGGGTGTTGCGGTGGGCACGTGTGGAGAGAGTAGGGGAGGAAGGGAGGCTCACGTGTGAAGGGTGCGGAGGAGCGAGGTGGTTGCCTTGTTTCGAGTGCGGCGGAAGCTGTAAGGTGGCGGCGGTTGGGGCGGCCAAAGGTGAAAGGTGGGAGAGGTGTGTCAAGTGTAATGAGAATGGATTGATTCGTTGTCCCGTGTGTTTTGTTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

368

Amino Acids

41.02

Weight (kDa)

5.67

Isoelectric Point (pI)

50.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 216 - 281 1e-09 Glutaredoxin
GRXCR1-2_C PF23733 317 - 366 1.5e-16 GRXCR1/2, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014483)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64500
fragaria_vesca FvH4_5g04960
malus_domestica MD06G1110300.v1.1
prunus_persica Prupe.5G123100_v2.0.a1
pyrus_communis pycom06g10360
rosa_chinensis RchiOBHm_Chr7g0194111
rosa_laevigata RLG00000004217
rosa_multiflora Rmu_sc0003468.1_g000003 Rmu_sc0007117.1_g000001 Rmu_sc0009433.1_g000004
rosa_roxburghii Rroxscaffold_3G00261550
rosa_rugosa Rorug07G0013800
rosa_samantha Rh7AG140900 Rh7BG141600 Rh7CG145000 Rh7DG142400
rosa_wichuraiana Rw7G012050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 764
AatII GACGTC 1 cut(s) 659
Acc36I ACCTGC 1 cut(s) 271
AccB1I GGYRCC 1 cut(s) 811
AccB7I CCANNNNNTGG 1 cut(s) 355
AccI GTMKAC 2 cut(s) 288, 648
AccII CGCG 4 cut(s) 77, 331, 395, 820
AcoI YGGCCR 1 cut(s) 1026
AcsI RAATTY 1 cut(s) 116
AcvI CACGTG 2 cut(s) 914, 948
AcyI GRCGYC 3 cut(s) 656, 759, 812
AfaI GTAC 3 cut(s) 10, 683, 842
AfiI CCNNNNNNNGG 5 cut(s) 355, 498, 598, 626, 629
AflII CTTAAG 2 cut(s) 422, 779
AflIII ACRYGT 3 cut(s) 747, 913, 947
AgsI TTSAA 2 cut(s) 122, 368
AjiI CACGTC 1 cut(s) 748
AluBI AGCT 7 cut(s) 32, 364, 421, 448, 778, 787, 1002
AluI AGCT 7 cut(s) 32, 364, 421, 448, 778, 787, 1002
Alw26I GTCTC 2 cut(s) 173, 531
Ama87I CYCGRG 2 cut(s) 455, 496
AoxI GGCC 4 cut(s) 375, 500, 705, 1026
ApeKI GCWGC 2 cut(s) 718, 854
ApoI RAATTY 1 cut(s) 116
Asp700I GAANNNNTTC 1 cut(s) 524
AspLEI GCGC 3 cut(s) 341, 397, 814
AspS9I GGNCC 4 cut(s) 375, 500, 589, 705
AsuC2I CCSGG 2 cut(s) 608, 624
AsuHPI GGTGA 3 cut(s) 215, 589, 1046
AvaI CYCGRG 2 cut(s) 455, 496
AvaII GGWCC 1 cut(s) 589
BaeGI GKGCMC 1 cut(s) 913
BanI GGYRCC 1 cut(s) 811
BbrPI CACGTG 2 cut(s) 914, 948
BbsI GAAGAC 1 cut(s) 151
BbvI GCAGC 2 cut(s) 730, 866
BccI CCATC 3 cut(s) 104, 194, 716
BceAI ACGGC 3 cut(s) 49, 254, 335
BcgI CGANNNNNNTGC 4 cut(s) 643, 677, 958, 992
BcnI CCSGG 2 cut(s) 608, 624
BcoDI GTCTC 2 cut(s) 173, 531
BfaI CTAG 2 cut(s) 69, 245
BfoI RGCGCY 1 cut(s) 815
BfrI CTTAAG 2 cut(s) 422, 779
BfuAI ACCTGC 1 cut(s) 271
Bme1390I CCNGG 2 cut(s) 608, 624
Bme18I GGWCC 1 cut(s) 589
BmeT110I CYCGRG 2 cut(s) 455, 496
BmgBI CACGTC 1 cut(s) 748
BmgT120I GGNCC 4 cut(s) 375, 500, 589, 705
BmiI GGNNCC 4 cut(s) 501, 590, 591, 813
BmrFI CCNGG 2 cut(s) 608, 624
BmrI ACTGGG 1 cut(s) 595
BmsI GCATC 3 cut(s) 350, 396, 812
BmuI ACTGGG 1 cut(s) 595
BoxI GACNNNNGTC 1 cut(s) 457
BpiI GAAGAC 1 cut(s) 151
BpuEI CTTGAG 1 cut(s) 790
BpuMI CCSGG 2 cut(s) 608, 624
BsaAI YACGTR 3 cut(s) 681, 914, 948
BsaHI GRCGYC 3 cut(s) 656, 759, 812
BsaJI CCNNGG 4 cut(s) 107, 317, 329, 503
BsaXI ACNNNNNCTCC 2 cut(s) 717, 747
Bsc4I CCNNNNNNNGG 5 cut(s) 355, 498, 598, 626, 629
Bse118I RCCGGY 1 cut(s) 574
Bse1I ACTGG 2 cut(s) 360, 590
BseDI CCNNGG 4 cut(s) 107, 317, 329, 503
BseGI GGATG 2 cut(s) 96, 184
BseLI CCNNNNNNNGG 5 cut(s) 355, 498, 598, 626, 629
BseMII CTCAG 1 cut(s) 497
BseNI ACTGG 2 cut(s) 360, 590
BseRI GAGGAG 4 cut(s) 303, 642, 864, 978
BseSI GKGCMC 1 cut(s) 913
BseXI GCAGC 2 cut(s) 730, 866
Bsh1236I CGCG 4 cut(s) 77, 331, 395, 820
Bsh1285I CGRYCG 1 cut(s) 166
BshFI GGCC 4 cut(s) 377, 502, 707, 1028
BshNI GGYRCC 1 cut(s) 811
BsiEI CGRYCG 1 cut(s) 166
BsiHKCI CYCGRG 2 cut(s) 455, 496
BsiSI CCGG 6 cut(s) 281, 305, 575, 608, 623, 762
BsiWI CGTACG 1 cut(s) 681
BslFI GGGAC 3 cut(s) 602, 758, 1071
BslI CCNNNNNNNGG 5 cut(s) 355, 498, 598, 626, 629
BsmAI GTCTC 2 cut(s) 173, 531
BsmBI CGTCTC 1 cut(s) 173
BsmFI GGGAC 3 cut(s) 602, 758, 1071
BsnI GGCC 4 cut(s) 377, 502, 707, 1028
BsoBI CYCGRG 2 cut(s) 455, 496
Bsp1286I GDGCHC 1 cut(s) 913
Bsp1407I TGTACA 1 cut(s) 8
Bsp143I GATC 1 cut(s) 466
Bsp19I CCATGG 1 cut(s) 107
BspANI GGCC 4 cut(s) 377, 502, 707, 1028
BspCNI CTCAG 1 cut(s) 496
BspFNI CGCG 4 cut(s) 77, 331, 395, 820
BspLI GGNNCC 4 cut(s) 501, 590, 591, 813
BspMI ACCTGC 1 cut(s) 271
BspQI GCTCTTC 1 cut(s) 329
BspT107I GGYRCC 1 cut(s) 811
BspTI CTTAAG 2 cut(s) 422, 779
BsrFI RCCGGY 1 cut(s) 574
BsrGI TGTACA 1 cut(s) 8
BsrI ACTGG 2 cut(s) 360, 590
BssAI RCCGGY 1 cut(s) 574
BssECI CCNNGG 4 cut(s) 107, 317, 329, 503
BssMI GATC 1 cut(s) 466
BssNI GRCGYC 3 cut(s) 656, 759, 812
BssT1I CCWWGG 1 cut(s) 107
Bst4CI ACNGT 2 cut(s) 157, 167
Bst6I CTCTTC 1 cut(s) 329
BstACI GRCGYC 3 cut(s) 656, 759, 812
BstAFI CTTAAG 2 cut(s) 422, 779
BstAPI GCANNNNNTGC 1 cut(s) 670
BstAUI TGTACA 1 cut(s) 8
BstBAI YACGTR 3 cut(s) 681, 914, 948
BstC8I GCNNGC 2 cut(s) 24, 776
BstDEI CTNAG 3 cut(s) 449, 483, 596
BstDSI CCRYGG 3 cut(s) 107, 317, 329
BstF5I GGATG 2 cut(s) 96, 184
BstFNI CGCG 4 cut(s) 77, 331, 395, 820
BstH2I RGCGCY 1 cut(s) 815
BstHHI GCGC 3 cut(s) 341, 397, 814
BstKTI GATC 1 cut(s) 469
BstMAI GTCTC 2 cut(s) 173, 531
BstMBI GATC 1 cut(s) 466
BstMCI CGRYCG 1 cut(s) 166
BstMWI GCNNNNNNNGC 6 cut(s) 328, 670, 784, 809, 999, 1022
BstPAI GACNNNNGTC 1 cut(s) 457
BstSCI CCNGG 2 cut(s) 606, 622
BstSLI GKGCMC 1 cut(s) 913
BstUI CGCG 4 cut(s) 77, 331, 395, 820
BstV1I GCAGC 2 cut(s) 730, 866
BstV2I GAAGAC 1 cut(s) 151
BsuRI GGCC 4 cut(s) 377, 502, 707, 1028
BtgI CCRYGG 3 cut(s) 107, 317, 329
BtgZI GCGATG 2 cut(s) 373, 884
BtrI CACGTC 1 cut(s) 748
BtsCI GGATG 2 cut(s) 96, 184
BtsIMutI CAGTG 3 cut(s) 353, 516, 813
BveI ACCTGC 1 cut(s) 271
Cac8I GCNNGC 2 cut(s) 24, 776
CfoI GCGC 3 cut(s) 341, 397, 814
Cfr10I RCCGGY 1 cut(s) 574
Cfr13I GGNCC 4 cut(s) 375, 500, 589, 705
Cfr42I CCGCGG 1 cut(s) 332
CseI GACGC 3 cut(s) 218, 662, 767
Csp6I GTAC 3 cut(s) 9, 682, 841
CviAII CATG 4 cut(s) 108, 125, 222, 712
CviQI GTAC 3 cut(s) 9, 682, 841
DdeI CTNAG 3 cut(s) 449, 483, 596
DinI GGCGCC 1 cut(s) 813
DpnI GATC 1 cut(s) 468
DpnII GATC 1 cut(s) 466
DrdI GACNNNNNNGTC 1 cut(s) 764
DseDI GACNNNNNNGTC 1 cut(s) 764
EaeI YGGCCR 1 cut(s) 1026
Eam1104I CTCTTC 1 cut(s) 329
EarI CTCTTC 1 cut(s) 329
EciI GGCGGA 2 cut(s) 609, 1011
Eco130I CCWWGG 1 cut(s) 107
Eco47I GGWCC 1 cut(s) 589
Eco72I CACGTG 2 cut(s) 914, 948
Eco88I CYCGRG 2 cut(s) 455, 496
EcoO109I RGGNCCY 2 cut(s) 500, 589
EcoT14I CCWWGG 1 cut(s) 107
EgeI GGCGCC 1 cut(s) 813
EheI GGCGCC 1 cut(s) 813
ErhI CCWWGG 1 cut(s) 107
Esp3I CGTCTC 1 cut(s) 173
FaeI CATG 4 cut(s) 111, 128, 225, 715
FaiI YATR 6 cut(s) 109, 126, 223, 524, 695, 713
FaqI GGGAC 3 cut(s) 602, 758, 1071
FatI CATG 4 cut(s) 107, 124, 221, 711
FblI GTMKAC 2 cut(s) 288, 648
FokI GGATG 2 cut(s) 83, 191
FspBI CTAG 2 cut(s) 69, 245
GlaI GCGC 3 cut(s) 340, 396, 813
HaeII RGCGCY 1 cut(s) 815
HaeIII GGCC 4 cut(s) 377, 502, 707, 1028
HapII CCGG 6 cut(s) 281, 305, 575, 608, 623, 762
HgaI GACGC 3 cut(s) 218, 662, 767
HhaI GCGC 3 cut(s) 341, 397, 814
Hin1I GRCGYC 3 cut(s) 656, 759, 812
Hin1II CATG 4 cut(s) 111, 128, 225, 715
Hin6I GCGC 3 cut(s) 339, 395, 812
HinP1I GCGC 3 cut(s) 339, 395, 812
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HindIII AAGCTT 1 cut(s) 419
HinfI GANTC 7 cut(s) 290, 310, 434, 458, 476, 765, 1078
HpaII CCGG 6 cut(s) 281, 305, 575, 608, 623, 762
HphI GGTGA 3 cut(s) 215, 589, 1046
Hpy166II GTNNAC 7 cut(s) 9, 52, 91, 289, 480, 649, 736
Hpy188I TCNGA 1 cut(s) 463
Hpy188III TCNNGA 5 cut(s) 170, 245, 403, 532, 769
Hpy8I GTNNAC 7 cut(s) 9, 52, 91, 289, 480, 649, 736
Hpy99I CGWCG 8 cut(s) 41, 44, 50, 176, 409, 658, 661, 678
HpyAV CCTTC 5 cut(s) 508, 554, 629, 929, 947
HpyCH4III ACNGT 2 cut(s) 157, 167
HpyCH4IV ACGT 7 cut(s) 36, 48, 656, 680, 747, 913, 947
HpyCH4V TGCA 1 cut(s) 664
HpyF10VI GCNNNNNNNGC 6 cut(s) 328, 670, 784, 809, 999, 1022
HpyF3I CTNAG 3 cut(s) 449, 483, 596
HpySE526I ACGT 7 cut(s) 36, 48, 656, 680, 747, 913, 947
Hsp92I GRCGYC 3 cut(s) 656, 759, 812
Hsp92II CATG 4 cut(s) 111, 128, 225, 715
HspAI GCGC 3 cut(s) 339, 395, 812
KasI GGCGCC 1 cut(s) 811
KflI GGGWCCC 1 cut(s) 589
KspI CCGCGG 1 cut(s) 332
Kzo9I GATC 1 cut(s) 466
LguI GCTCTTC 1 cut(s) 329
LmnI GCTCC 6 cut(s) 155, 217, 715, 784, 851, 965
LpnPI CCDG 9 cut(s) 276, 294, 318, 341, 571, 588, 621, 636, 775
Lsp1109I GCAGC 2 cut(s) 730, 866
LweI GCATC 3 cut(s) 350, 396, 812
MaeI CTAG 2 cut(s) 69, 245
MaeII ACGT 7 cut(s) 36, 48, 656, 680, 747, 913, 947
MaeIII GTNAC 1 cut(s) 862
MalI GATC 1 cut(s) 468
MboI GATC 1 cut(s) 466
MboII GAAGA 5 cut(s) 6, 140, 151, 239, 346
MhlI GDGCHC 1 cut(s) 913
MluCI AATT 2 cut(s) 116, 1102
Mly113I GGCGCC 1 cut(s) 812
MlyI GAGTC 6 cut(s) 284, 304, 443, 467, 485, 774
MroXI GAANNNNTTC 1 cut(s) 524
MseI TTAA 8 cut(s) 258, 273, 297, 417, 423, 780, 1101, 1105
MslI CAYNNNNRTG 1 cut(s) 129
MspA1I CMGCKG 2 cut(s) 331, 857
MspCI CTTAAG 2 cut(s) 422, 779
MspI CCGG 6 cut(s) 281, 305, 575, 608, 623, 762
MspR9I CCNGG 2 cut(s) 608, 624
MvnI CGCG 4 cut(s) 77, 331, 395, 820
MwoI GCNNNNNNNGC 6 cut(s) 328, 670, 784, 809, 999, 1022
NarI GGCGCC 1 cut(s) 812
NciI CCSGG 2 cut(s) 608, 624
NcoI CCATGG 1 cut(s) 107
NdeII GATC 1 cut(s) 466
NlaIII CATG 4 cut(s) 111, 128, 225, 715
NlaIV GGNNCC 4 cut(s) 501, 590, 591, 813
NmuCI GTSAC 1 cut(s) 862
PacI TTAATTAA 1 cut(s) 1105
PciSI GCTCTTC 1 cut(s) 329
PcsI WCGNNNNNNNCGW 4 cut(s) 42, 45, 168, 744
PdmI GAANNNNTTC 1 cut(s) 524
PfeI GAWTC 1 cut(s) 1078
Pfl23II CGTACG 1 cut(s) 681
PflMI CCANNNNNTGG 1 cut(s) 355
PfoI TCCNGGA 1 cut(s) 606
PleI GAGTC 6 cut(s) 284, 304, 442, 466, 484, 773
PluTI GGCGCC 1 cut(s) 815
PmaCI CACGTG 2 cut(s) 914, 948
PmlI CACGTG 2 cut(s) 914, 948
PpsI GAGTC 6 cut(s) 284, 304, 442, 466, 484, 773
Ppu21I YACGTR 3 cut(s) 681, 914, 948
PpuMI RGGWCCY 1 cut(s) 589
PshAI GACNNNNGTC 1 cut(s) 457
Psp5II RGGWCCY 1 cut(s) 589
PspCI CACGTG 2 cut(s) 914, 948
PspLI CGTACG 1 cut(s) 681
PspN4I GGNNCC 4 cut(s) 501, 590, 591, 813
PspPI GGNCC 4 cut(s) 375, 500, 589, 705
PspPPI RGGWCCY 1 cut(s) 589
RsaI GTAC 3 cut(s) 10, 683, 842
RsaNI GTAC 3 cut(s) 9, 682, 841
RseI CAYNNNNRTG 1 cut(s) 129
SacII CCGCGG 1 cut(s) 332
SapI GCTCTTC 1 cut(s) 329
SaqAI TTAA 8 cut(s) 258, 273, 297, 417, 423, 780, 1101, 1105
Sau3AI GATC 1 cut(s) 466
Sau96I GGNCC 4 cut(s) 375, 500, 589, 705
SchI GAGTC 6 cut(s) 284, 304, 443, 467, 485, 774
ScrFI CCNGG 2 cut(s) 608, 624
SduI GDGCHC 1 cut(s) 913
SfaNI GCATC 3 cut(s) 350, 396, 812
SfoI GGCGCC 1 cut(s) 813
Sfr303I CCGCGG 1 cut(s) 332
SgrBI CCGCGG 1 cut(s) 332
SinI GGWCC 1 cut(s) 589
SmiMI CAYNNNNRTG 1 cut(s) 129
SmlI CTYRAG 3 cut(s) 422, 769, 779
SmoI CTYRAG 3 cut(s) 422, 769, 779
Sse9I AATT 2 cut(s) 116, 1102
SspDI GGCGCC 1 cut(s) 811
SspMI CTAG 2 cut(s) 69, 245
StyD4I CCNGG 2 cut(s) 606, 622
StyI CCWWGG 1 cut(s) 107
TaaI ACNGT 2 cut(s) 157, 167
TaiI ACGT 7 cut(s) 39, 51, 659, 683, 750, 916, 950
TaqI TCGA 5 cut(s) 162, 171, 437, 469, 987
TaqII GACCGA 1 cut(s) 495
TasI AATT 2 cut(s) 116, 1102
TatI WGTACW 1 cut(s) 8
TauI GCSGC 8 cut(s) 269, 325, 395, 817, 820, 996, 1016, 1028
TfiI GAWTC 1 cut(s) 1078
Tru1I TTAA 8 cut(s) 258, 273, 297, 417, 423, 780, 1101, 1105
Tru9I TTAA 8 cut(s) 258, 273, 297, 417, 423, 780, 1101, 1105
TscAI CASTG 3 cut(s) 360, 516, 813
TseFI GTSAC 1 cut(s) 862
TseI GCWGC 2 cut(s) 718, 854
Tsp45I GTSAC 1 cut(s) 862
TspDTI ATGAA 3 cut(s) 141, 596, 887
TspGWI ACGGA 1 cut(s) 562
TspRI CASTG 3 cut(s) 360, 516, 813
Van91I CCANNNNNTGG 1 cut(s) 355
Vha464I CTTAAG 2 cut(s) 422, 779
VpaK11BI GGWCC 1 cut(s) 589
XapI RAATTY 1 cut(s) 116
XbaI TCTAGA 1 cut(s) 244
XmiI GTMKAC 2 cut(s) 288, 648
XmnI GAANNNNTTC 1 cut(s) 524
XspI CTAG 2 cut(s) 69, 245
ZraI GACGTC 1 cut(s) 657
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.