Rw7G012050

Glutaredoxin

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Reverse (-)
11424602 .. 11425963
1362 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G012050.1

Sequence Viewer

Length: 1026 bp
ATGCGCCTCCTCGAAACGGGTAGAGGCAGCCGTAGATTACAAGCCGGCGCCGGCGAGCTTCGCGTCTTCAACATCAACGGCATCCAAGAGCCCTGGCTCGGCCTCGAGAATACCACGTCGCAGCAGGAGGAAACCAAAAAACCAGTACACGTGCCCGCGCAAATCCTCGACAAGCTCGATGAGTCCGACGCCGCCGCCGCGCCGCAAACGTGGGACGAGGTCAGTAAGGCCTTAGAGAACCTCAAGCCCAATCTCAGCCCAAAGCCGAGCCCAAGGAGCGGAGGAAAGCCGCGTAAGAGCTTGTCTTTTGACTCCTTCCACACTCTAGAAGAGCTCGACAACAAGCTCACCGCTCCGAAGACGGCCGGGTTGAAAAAGAGCGAGTCGATGAATTCCTTGCAGAGGAAGAAACCCGAACCATCGACGGTGGGATACAAGTCTGTGAAGGAGAACATATTTATAAAGAGGGACCGAATGGAGAGACAAAAAGAAGGGCAGGTGGCGGTGATTGACAAGCTGATAAGCCTGAGAGATCCTCTCAGCGACTACCCGGAGAAATGTCCGCCGGGGGGAGCCGAGACCGTGGTGATCTACACGACGTCGTTACGTGGGGTGCGGCGGACGTACGAGGACTGCCAGAGAGTGAAGTCGGTGTTCGAGGTGAACAGGCTGGTGTACGACGAGCGTGACGTGTCGCTGCACGGCGAGTTTCTGACGGAGCTGAAGGGTTTGGTGGGGGAGGGGCTGGGGGTGCCTAGGGTTTTTGTGAAGGGGAGGTATGTGGGGGGAGTGGAGGAGGTGGTGGAGCTGAATGAGAGTGGACGGTTGGGGAGGATAGTGAAGTGGGCACGTGTGGAGACTGGGGTGGGGCCGCAAGCGTGTGGGGGTTGCGGTGGGGCCAGGTTTGTGCCTTGTATGGAGTGTGGGGGAAGTTGTAAGGTGGTGATTGGGGATAAGAAGGAGAGGTGTCCAAAGTGTAATGAGAATGGGTTGGTTTACTGTGTGGCTTGCTGGACTTTGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

341

Amino Acids

37.63

Weight (kDa)

8.77

Isoelectric Point (pI)

41.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 195 - 261 3.2e-09 Glutaredoxin
GRXCR1-2_C PF23733 294 - 337 3.1e-15 GRXCR1/2, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014483)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 461
AarI CACCTGC 1 cut(s) 487
AatII GACGTC 1 cut(s) 602
Acc36I ACCTGC 1 cut(s) 487
AccB1I GGYRCC 2 cut(s) 47, 751
AccBSI CCGCTC 2 cut(s) 279, 353
AccII CGCG 4 cut(s) 63, 158, 200, 292
AclWI GGATC 1 cut(s) 527
AcoI YGGCCR 1 cut(s) 363
AcsI RAATTY 1 cut(s) 391
AcuI CTGAAG 1 cut(s) 743
AcvI CACGTG 2 cut(s) 151, 851
AcyI GRCGYC 3 cut(s) 48, 189, 599
AfaI GTAC 3 cut(s) 147, 626, 677
AfiI CCNNNNNNNGG 5 cut(s) 16, 98, 278, 402, 569
AflIII ACRYGT 3 cut(s) 148, 690, 850
AgsI TTSAA 2 cut(s) 70, 373
AjiI CACGTC 2 cut(s) 117, 691
AjnI CCWGG 2 cut(s) 92, 899
AluBI AGCT 8 cut(s) 58, 175, 300, 334, 346, 517, 721, 808
AluI AGCT 8 cut(s) 58, 175, 300, 334, 346, 517, 721, 808
Alw21I GWGCWC 1 cut(s) 336
Alw26I GTCTC 3 cut(s) 475, 572, 851
AlwI GGATC 1 cut(s) 527
Ama87I CYCGRG 1 cut(s) 104
AoxI GGCC 5 cut(s) 100, 228, 363, 869, 897
ApeKI GCWGC 3 cut(s) 27, 121, 697
ApoI RAATTY 1 cut(s) 391
AspA2I CCTAGG 1 cut(s) 755
AspLEI GCGC 4 cut(s) 6, 50, 160, 202
AspS9I GGNCC 3 cut(s) 469, 869, 897
AsuC2I CCSGG 3 cut(s) 367, 551, 567
AsuHPI GGTGA 5 cut(s) 340, 517, 598, 673, 955
AvaI CYCGRG 1 cut(s) 104
AvaII GGWCC 1 cut(s) 469
AvrII CCTAGG 1 cut(s) 755
BaeGI GKGCMC 2 cut(s) 156, 850
BanI GGYRCC 2 cut(s) 47, 751
BanII GRGCYC 3 cut(s) 93, 272, 336
BbrPI CACGTG 2 cut(s) 151, 851
BbsI GAAGAC 2 cut(s) 58, 365
Bbv12I GWGCWC 1 cut(s) 336
BbvI GCAGC 3 cut(s) 39, 133, 684
BccI CCATC 1 cut(s) 427
BceAI ACGGC 4 cut(s) 15, 94, 378, 718
BciT130I CCWGG 2 cut(s) 94, 901
BciVI GTATCC 1 cut(s) 425
BcnI CCSGG 3 cut(s) 367, 551, 567
BcoDI GTCTC 3 cut(s) 475, 572, 851
BfaI CTAG 2 cut(s) 326, 756
BfoI RGCGCY 1 cut(s) 51
BfuAI ACCTGC 1 cut(s) 487
BfuI GTATCC 1 cut(s) 425
BlnI CCTAGG 1 cut(s) 755
Bme1390I CCNGG 5 cut(s) 94, 367, 551, 567, 901
Bme18I GGWCC 1 cut(s) 469
BmeT110I CYCGRG 1 cut(s) 104
BmgBI CACGTC 2 cut(s) 117, 691
BmgT120I GGNCC 3 cut(s) 469, 869, 897
BmiI GGNNCC 6 cut(s) 49, 470, 574, 753, 870, 898
BmrFI CCNGG 5 cut(s) 94, 367, 551, 567, 901
BmrI ACTGGG 1 cut(s) 870
BmsI GCATC 1 cut(s) 90
BmuI ACTGGG 1 cut(s) 870
BpiI GAAGAC 2 cut(s) 58, 365
BplI GAGNNNNNCTC 4 cut(s) 520, 552, 522, 554
BpuEI CTTGAG 1 cut(s) 227
BpuMI CCSGG 3 cut(s) 367, 551, 567
BsaAI YACGTR 3 cut(s) 151, 608, 851
BsaHI GRCGYC 3 cut(s) 48, 189, 599
BsaI GGTCTC 1 cut(s) 572
BsaJI CCNNGG 5 cut(s) 92, 272, 566, 582, 755
Bsc4I CCNNNNNNNGG 5 cut(s) 16, 98, 278, 402, 569
Bse118I RCCGGY 2 cut(s) 44, 50
Bse1I ACTGG 2 cut(s) 143, 865
BseBI CCWGG 2 cut(s) 94, 901
BseDI CCNNGG 5 cut(s) 92, 272, 566, 582, 755
BseGI GGATG 1 cut(s) 81
BseLI CCNNNNNNNGG 5 cut(s) 16, 98, 278, 402, 569
BseMII CTCAG 3 cut(s) 268, 518, 553
BseNI ACTGG 2 cut(s) 143, 865
BseRI GAGGAG 1 cut(s) 809
BseSI GKGCMC 2 cut(s) 156, 850
BseX3I CGGCCG 1 cut(s) 363
BseXI GCAGC 3 cut(s) 39, 133, 684
BseYI CCCAGC 1 cut(s) 745
BsgI GTGCAG 1 cut(s) 683
Bsh1236I CGCG 4 cut(s) 63, 158, 200, 292
Bsh1285I CGRYCG 1 cut(s) 366
BshFI GGCC 5 cut(s) 102, 230, 365, 871, 899
BshNI GGYRCC 2 cut(s) 47, 751
BsiEI CGRYCG 1 cut(s) 366
BsiHKAI GWGCWC 1 cut(s) 336
BsiHKCI CYCGRG 1 cut(s) 104
BsiSI CCGG 5 cut(s) 45, 51, 366, 551, 566
BsiWI CGTACG 1 cut(s) 624
BslFI GGGAC 2 cut(s) 227, 482
BslI CCNNNNNNNGG 5 cut(s) 16, 98, 278, 402, 569
BsmAI GTCTC 3 cut(s) 475, 572, 851
BsmFI GGGAC 2 cut(s) 227, 482
BsnI GGCC 5 cut(s) 102, 230, 365, 871, 899
Bso31I GGTCTC 1 cut(s) 572
BsoBI CYCGRG 1 cut(s) 104
Bsp1286I GDGCHC 5 cut(s) 93, 156, 272, 336, 850
Bsp143I GATC 2 cut(s) 532, 588
BspANI GGCC 5 cut(s) 102, 230, 365, 871, 899
BspCNI CTCAG 3 cut(s) 267, 519, 552
BspFNI CGCG 4 cut(s) 63, 158, 200, 292
BspLI GGNNCC 6 cut(s) 49, 470, 574, 753, 870, 898
BspMI ACCTGC 1 cut(s) 487
BspPI GGATC 1 cut(s) 527
BspQI GCTCTTC 1 cut(s) 324
BspT107I GGYRCC 2 cut(s) 47, 751
BspTNI GGTCTC 1 cut(s) 572
BsrBI CCGCTC 2 cut(s) 279, 353
BsrFI RCCGGY 2 cut(s) 44, 50
BsrI ACTGG 2 cut(s) 143, 865
BssAI RCCGGY 2 cut(s) 44, 50
BssECI CCNNGG 5 cut(s) 92, 272, 566, 582, 755
BssMI GATC 2 cut(s) 532, 588
BssNI GRCGYC 3 cut(s) 48, 189, 599
BssT1I CCWWGG 2 cut(s) 272, 755
Bst2UI CCWGG 2 cut(s) 94, 901
Bst4CI ACNGT 4 cut(s) 427, 583, 825, 1001
Bst6I CTCTTC 1 cut(s) 324
BstACI GRCGYC 3 cut(s) 48, 189, 599
BstBAI YACGTR 3 cut(s) 151, 608, 851
BstC8I GCNNGC 6 cut(s) 46, 52, 56, 156, 876, 1009
BstDEI CTNAG 4 cut(s) 232, 254, 527, 539
BstDSI CCRYGG 1 cut(s) 582
BstENI CCTNNNNNAGG 1 cut(s) 400
BstF5I GGATG 1 cut(s) 81
BstFNI CGCG 4 cut(s) 63, 158, 200, 292
BstH2I RGCGCY 1 cut(s) 51
BstHHI GCGC 4 cut(s) 6, 50, 160, 202
BstKTI GATC 2 cut(s) 535, 591
BstMAI GTCTC 3 cut(s) 475, 572, 851
BstMBI GATC 2 cut(s) 532, 588
BstMCI CGRYCG 1 cut(s) 366
BstMWI GCNNNNNNNGC 4 cut(s) 60, 197, 276, 751
BstNI CCWGG 2 cut(s) 94, 901
BstSCI CCNGG 5 cut(s) 92, 365, 549, 565, 899
BstSLI GKGCMC 2 cut(s) 156, 850
BstUI CGCG 4 cut(s) 63, 158, 200, 292
BstV1I GCAGC 3 cut(s) 39, 133, 684
BstV2I GAAGAC 2 cut(s) 58, 365
BstX2I RGATCY 1 cut(s) 532
BstYI RGATCY 1 cut(s) 532
BstZI CGGCCG 1 cut(s) 363
BsuI GTATCC 1 cut(s) 425
BsuRI GGCC 5 cut(s) 102, 230, 365, 871, 899
BtgI CCRYGG 1 cut(s) 582
BtrI CACGTC 2 cut(s) 117, 691
BtsCI GGATG 1 cut(s) 81
BveI ACCTGC 1 cut(s) 487
Cac8I GCNNGC 6 cut(s) 46, 52, 56, 156, 876, 1009
CfoI GCGC 4 cut(s) 6, 50, 160, 202
Cfr10I RCCGGY 2 cut(s) 44, 50
Cfr13I GGNCC 3 cut(s) 469, 869, 897
CseI GACGC 2 cut(s) 52, 197
Csp6I GTAC 3 cut(s) 146, 625, 676
CviAII CATG 1 cut(s) 1023
CviQI GTAC 3 cut(s) 146, 625, 676
DdeI CTNAG 4 cut(s) 232, 254, 527, 539
DinI GGCGCC 1 cut(s) 49
DpnI GATC 2 cut(s) 534, 590
DpnII GATC 2 cut(s) 532, 588
EaeI YGGCCR 1 cut(s) 363
EagI CGGCCG 1 cut(s) 363
Eam1104I CTCTTC 1 cut(s) 324
EarI CTCTTC 1 cut(s) 324
EciI GGCGGA 2 cut(s) 552, 634
Ecl136II GAGCTC 1 cut(s) 334
EclXI CGGCCG 1 cut(s) 363
Eco130I CCWWGG 2 cut(s) 272, 755
Eco147I AGGCCT 1 cut(s) 230
Eco24I GRGCYC 3 cut(s) 93, 272, 336
Eco31I GGTCTC 1 cut(s) 572
Eco47I GGWCC 1 cut(s) 469
Eco52I CGGCCG 1 cut(s) 363
Eco53kI GAGCTC 1 cut(s) 334
Eco57I CTGAAG 1 cut(s) 743
Eco72I CACGTG 2 cut(s) 151, 851
Eco88I CYCGRG 1 cut(s) 104
EcoICRI GAGCTC 1 cut(s) 334
EcoNI CCTNNNNNAGG 1 cut(s) 400
EcoRI GAATTC 1 cut(s) 391
EcoRII CCWGG 2 cut(s) 92, 899
EcoT14I CCWWGG 2 cut(s) 272, 755
EcoT38I GRGCYC 3 cut(s) 93, 272, 336
EgeI GGCGCC 1 cut(s) 49
EheI GGCGCC 1 cut(s) 49
ErhI CCWWGG 2 cut(s) 272, 755
FaeI CATG 1 cut(s) 1026
FaiI YATR 5 cut(s) 455, 461, 780, 917, 1024
FaqI GGGAC 2 cut(s) 227, 482
FatI CATG 1 cut(s) 1022
FauI CCCGC 1 cut(s) 163
FokI GGATG 1 cut(s) 68
FriOI GRGCYC 3 cut(s) 93, 272, 336
FspBI CTAG 2 cut(s) 326, 756
GlaI GCGC 4 cut(s) 5, 49, 159, 201
GsaI CCCAGC 1 cut(s) 749
HaeII RGCGCY 1 cut(s) 51
HaeIII GGCC 5 cut(s) 102, 230, 365, 871, 899
HapII CCGG 5 cut(s) 45, 51, 366, 551, 566
HgaI GACGC 2 cut(s) 52, 197
HhaI GCGC 4 cut(s) 6, 50, 160, 202
Hin1I GRCGYC 3 cut(s) 48, 189, 599
Hin1II CATG 1 cut(s) 1026
Hin6I GCGC 4 cut(s) 4, 48, 158, 200
HinP1I GCGC 4 cut(s) 4, 48, 158, 200
HinfI GANTC 3 cut(s) 182, 311, 383
HpaII CCGG 5 cut(s) 45, 51, 366, 551, 566
HphI GGTGA 5 cut(s) 340, 517, 598, 673, 955
Hpy166II GTNNAC 5 cut(s) 148, 664, 676, 821, 997
Hpy188I TCNGA 3 cut(s) 187, 357, 714
Hpy188III TCNNGA 2 cut(s) 106, 326
Hpy8I GTNNAC 5 cut(s) 148, 664, 676, 821, 997
Hpy99I CGWCG 6 cut(s) 121, 191, 427, 601, 604, 683
HpyAV CCTTC 6 cut(s) 325, 439, 485, 718, 763, 952
HpyCH4III ACNGT 4 cut(s) 427, 583, 825, 1001
HpyCH4IV ACGT 8 cut(s) 116, 150, 209, 599, 607, 623, 690, 850
HpyCH4V TGCA 2 cut(s) 400, 700
HpyF10VI GCNNNNNNNGC 4 cut(s) 60, 197, 276, 751
HpyF3I CTNAG 4 cut(s) 232, 254, 527, 539
HpySE526I ACGT 8 cut(s) 116, 150, 209, 599, 607, 623, 690, 850
Hsp92I GRCGYC 3 cut(s) 48, 189, 599
Hsp92II CATG 1 cut(s) 1026
HspAI GCGC 4 cut(s) 4, 48, 158, 200
KasI GGCGCC 1 cut(s) 47
KroI GCCGGC 2 cut(s) 44, 50
KroNI GCCGGC 2 cut(s) 46, 52
Kzo9I GATC 2 cut(s) 532, 588
LguI GCTCTTC 1 cut(s) 324
LmnI GCTCC 5 cut(s) 276, 358, 572, 718, 805
Lsp1109I GCAGC 3 cut(s) 39, 133, 684
LweI GCATC 1 cut(s) 90
MaeI CTAG 2 cut(s) 326, 756
MaeII ACGT 8 cut(s) 116, 150, 209, 599, 607, 623, 690, 850
MaeIII GTNAC 2 cut(s) 603, 686
MalI GATC 2 cut(s) 534, 590
MbiI CCGCTC 2 cut(s) 279, 353
MboI GATC 2 cut(s) 532, 588
MboII GAAGA 4 cut(s) 58, 341, 370, 418
MflI RGATCY 1 cut(s) 532
MhlI GDGCHC 5 cut(s) 93, 156, 272, 336, 850
MluCI AATT 1 cut(s) 391
Mly113I GGCGCC 1 cut(s) 48
MlyI GAGTC 3 cut(s) 191, 305, 392
MmeI TCCRAC 1 cut(s) 210
MreI CGCCGGCG 1 cut(s) 50
MroNI GCCGGC 2 cut(s) 44, 50
MspI CCGG 5 cut(s) 45, 51, 366, 551, 566
MspR9I CCNGG 5 cut(s) 94, 367, 551, 567, 901
MvaI CCWGG 2 cut(s) 94, 901
MvnI CGCG 4 cut(s) 63, 158, 200, 292
MwoI GCNNNNNNNGC 4 cut(s) 60, 197, 276, 751
NaeI GCCGGC 2 cut(s) 46, 52
NarI GGCGCC 1 cut(s) 48
NciI CCSGG 3 cut(s) 367, 551, 567
NdeII GATC 2 cut(s) 532, 588
NgoMIV GCCGGC 2 cut(s) 44, 50
NlaIII CATG 1 cut(s) 1026
NlaIV GGNNCC 6 cut(s) 49, 470, 574, 753, 870, 898
NmeAIII GCCGAG 3 cut(s) 78, 291, 601
NmuCI GTSAC 1 cut(s) 686
PaeR7I CTCGAG 1 cut(s) 104
PaqCI CACCTGC 1 cut(s) 487
PceI AGGCCT 1 cut(s) 230
PciSI GCTCTTC 1 cut(s) 324
PcsI WCGNNNNNNNCGW 3 cut(s) 174, 183, 687
PdiI GCCGGC 2 cut(s) 46, 52
Pfl23II CGTACG 1 cut(s) 624
PflFI GACNNNGTC 1 cut(s) 218
PleI GAGTC 3 cut(s) 190, 305, 391
PluTI GGCGCC 1 cut(s) 51
PmaCI CACGTG 2 cut(s) 151, 851
PmlI CACGTG 2 cut(s) 151, 851
PpsI GAGTC 3 cut(s) 190, 305, 391
Ppu21I YACGTR 3 cut(s) 151, 608, 851
PsiI TTATAA 1 cut(s) 461
Psp124BI GAGCTC 1 cut(s) 336
Psp6I CCWGG 2 cut(s) 92, 899
PspCI CACGTG 2 cut(s) 151, 851
PspFI CCCAGC 1 cut(s) 745
PspGI CCWGG 2 cut(s) 92, 899
PspLI CGTACG 1 cut(s) 624
PspN4I GGNNCC 6 cut(s) 49, 470, 574, 753, 870, 898
PspPI GGNCC 3 cut(s) 469, 869, 897
PsuI RGATCY 1 cut(s) 532
PsyI GACNNNGTC 1 cut(s) 218
RsaI GTAC 3 cut(s) 147, 626, 677
RsaNI GTAC 3 cut(s) 146, 625, 676
SacI GAGCTC 1 cut(s) 336
SapI GCTCTTC 1 cut(s) 324
Sau3AI GATC 2 cut(s) 532, 588
Sau96I GGNCC 3 cut(s) 469, 869, 897
SchI GAGTC 3 cut(s) 191, 305, 392
ScrFI CCNGG 5 cut(s) 94, 367, 551, 567, 901
SduI GDGCHC 5 cut(s) 93, 156, 272, 336, 850
SfaNI GCATC 1 cut(s) 90
SfoI GGCGCC 1 cut(s) 49
Sfr274I CTCGAG 1 cut(s) 104
SgrAI CRCCGGYG 1 cut(s) 50
SinI GGWCC 1 cut(s) 469
SlaI CTCGAG 1 cut(s) 104
SmlI CTYRAG 2 cut(s) 104, 242
SmoI CTYRAG 2 cut(s) 104, 242
Sse9I AATT 1 cut(s) 391
SseBI AGGCCT 1 cut(s) 230
SspDI GGCGCC 1 cut(s) 47
SspMI CTAG 2 cut(s) 326, 756
SstI GAGCTC 1 cut(s) 336
StuI AGGCCT 1 cut(s) 230
StyD4I CCNGG 5 cut(s) 92, 365, 549, 565, 899
StyI CCWWGG 2 cut(s) 272, 755
TaaI ACNGT 4 cut(s) 427, 583, 825, 1001
TaiI ACGT 8 cut(s) 119, 153, 212, 602, 610, 626, 693, 853
TaqI TCGA 8 cut(s) 12, 105, 168, 177, 336, 386, 422, 657
TaqII GACCGA 1 cut(s) 486
TasI AATT 1 cut(s) 391
TatI WGTACW 1 cut(s) 145
TauI GCSGC 7 cut(s) 194, 197, 200, 205, 292, 619, 874
TseFI GTSAC 1 cut(s) 686
TseI GCWGC 3 cut(s) 27, 121, 697
Tsp45I GTSAC 1 cut(s) 686
TspDTI ATGAA 1 cut(s) 404
TspGWI ACGGA 1 cut(s) 731
Tth111I GACNNNGTC 1 cut(s) 218
VpaK11BI GGWCC 1 cut(s) 469
XagI CCTNNNNNAGG 1 cut(s) 400
XapI RAATTY 1 cut(s) 391
XbaI TCTAGA 1 cut(s) 325
XhoI CTCGAG 1 cut(s) 104
XmaJI CCTAGG 1 cut(s) 755
XspI CTAG 2 cut(s) 326, 756
ZraI GACGTC 1 cut(s) 600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.