FvH4_5g04960

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0014483
Physical Location & Seq
Forward (+)
2935110 .. 2936988
1879 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g04960.t1

Sequence Viewer

Length: 1089 bp
ATGGGATGCGCCTCCTCCAAACGGGTAGAAGTAGCCGCCTTAGATTACAAGCCGGCGCCGGCCAGCTTCGCCGTGTTCAACATCAATGGCATCCAAGAGCCCTGGCTCGGTCTGGAGAACGCAACTTCACAGCAAGAGGAAAAACCAGTACACGTGCCCGCGCAAATCCTCGACAAGCTCGACGAGTCCGACGCCGCAGCGCCGCAAACGTGGGACGAGGTGAGTAAGGCGTTAGAGAATCTCAAACCCAAGCTCAGCCCACAGCCAAGCCCAGCACCGCCGCCGGTGGCCAAGAAGGAAGAGGAGCGGAGGAAGCCGCGTAAGAGCTTGTCTTTCGACTCCTTCCACACTCTAGAAGAGCTCGACAACAAGCTAACCGCTCCGAAAGGGAACGGTTTGAAGAAGAGCGAGTCCATGCGTTCCTTGCAGTGGAAGAAACCGGAGTTAAACCGGTCCGAAATGACATCGCCAGACACACAAACTGAAACCGGAGTTGTTAGGTCAGTGAAGGAGAACATATTCATAAAGAGAGACAGAATGGAGAGGCAGAAGGAAGGGCAGGTGGCGGTGATAGACAAACTGATAAGCCTGAGAGACCCGCTGAGCGACTACCCGGAGAAATGTCCGCCGGGGGGAGCTGACTCCGTGGTGATCTACACGACGTCGTTGCGTGGAGTACGGCGGACGTACGAGGACTGCCAGAGAGTGAAGTCGGTGTTTGACGTGAACAGGCTGGTGTACGATGAGCGTGACGTGGCGTTGCACGGCGAGTTTCTGACGGAGCTGAAGGGTTTGGTGGGGGAGGGGTTAGGGGTGCCTAGGGTTTTTGTGAAGGGGAGATATGTGGGGGGAGTGGAGGAGGTGGTGGAGTTGAATGAGAGTGGAAGGTTGGGGAGGATAGTGAAGTGGGCACGTGTGGAGAGAGGGGCAGGGTTTCAAGCGTGCGGCGGTTGCGGCGGGGCGAGGTTTGTGCCGTGCATGGAGTGTGGGGGGAGTTGTAAGGTGTTGGTTGGGGATAAGAAGGAGAGGTGTGGAAAGTGTAATGAGAATGGGTTGGTTTACTGTGTGGCTTGCTGGTCTTTGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

363

Amino Acids

39.97

Weight (kDa)

8.17

Isoelectric Point (pI)

48.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 216 - 282 4.7e-09 Glutaredoxin
GRXCR1-2_C PF23733 315 - 358 2e-14 GRXCR1/2, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014483)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64500
fragaria_vesca FvH4_5g04960
malus_domestica MD06G1110300.v1.1
prunus_persica Prupe.5G123100_v2.0.a1
pyrus_communis pycom06g10360
rosa_chinensis RchiOBHm_Chr7g0194111
rosa_laevigata RLG00000004217
rosa_multiflora Rmu_sc0003468.1_g000003 Rmu_sc0007117.1_g000001 Rmu_sc0009433.1_g000004
rosa_roxburghii Rroxscaffold_3G00261550
rosa_rugosa Rorug07G0013800
rosa_samantha Rh7AG140900 Rh7BG141600 Rh7CG145000 Rh7DG142400
rosa_wichuraiana Rw7G012050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 550
AatII GACGTC 1 cut(s) 665
Acc36I ACCTGC 1 cut(s) 550
AccB1I GGYRCC 2 cut(s) 55, 814
AccBSI CCGCTC 2 cut(s) 307, 380
AccII CGCG 2 cut(s) 161, 319
AcoI YGGCCR 2 cut(s) 60, 288
AcuI CTGAAG 1 cut(s) 806
AcvI CACGTG 2 cut(s) 154, 914
AcyI GRCGYC 3 cut(s) 56, 192, 662
AfaI GTAC 4 cut(s) 150, 678, 689, 740
AfiI CCNNNNNNNGG 4 cut(s) 21, 107, 429, 632
AflIII ACRYGT 2 cut(s) 151, 913
AgeI ACCGGT 1 cut(s) 450
AgsI TTSAA 4 cut(s) 79, 400, 874, 938
AjiI CACGTC 2 cut(s) 724, 754
AjnI CCWGG 1 cut(s) 101
AluBI AGCT 8 cut(s) 66, 178, 253, 327, 361, 373, 638, 784
AluI AGCT 8 cut(s) 66, 178, 253, 327, 361, 373, 638, 784
Alw21I GWGCWC 1 cut(s) 363
Alw26I GTCTC 2 cut(s) 525, 588
AoxI GGCC 2 cut(s) 60, 288
ApeKI GCWGC 1 cut(s) 197
AsiGI ACCGGT 1 cut(s) 450
Asp700I GAANNNNTTC 1 cut(s) 518
AspA2I CCTAGG 1 cut(s) 818
AspLEI GCGC 4 cut(s) 11, 58, 163, 202
AspS9I GGNCC 1 cut(s) 453
AsuC2I CCSGG 2 cut(s) 614, 630
AsuHPI GGTGA 3 cut(s) 232, 580, 661
AvaII GGWCC 1 cut(s) 453
AvrII CCTAGG 1 cut(s) 818
BaeGI GKGCMC 2 cut(s) 159, 913
BalI TGGCCA 1 cut(s) 290
BanI GGYRCC 2 cut(s) 55, 814
BanII GRGCYC 2 cut(s) 102, 363
BbrPI CACGTG 2 cut(s) 154, 914
Bbv12I GWGCWC 1 cut(s) 363
BbvI GCAGC 1 cut(s) 209
BceAI ACGGC 4 cut(s) 56, 695, 781, 958
BcgI CGANNNNNNTGC 4 cut(s) 649, 683, 952, 986
BciT130I CCWGG 1 cut(s) 103
BcnI CCSGG 2 cut(s) 614, 630
BcoDI GTCTC 2 cut(s) 525, 588
BfaI CTAG 2 cut(s) 353, 819
BfoI RGCGCY 2 cut(s) 59, 203
BfuAI ACCTGC 1 cut(s) 550
BisI GCNGC 8 cut(s) 36, 195, 198, 203, 281, 317, 946, 955
BlnI CCTAGG 1 cut(s) 818
BlpI GCTNAGC 2 cut(s) 254, 602
BlsI GCNGC 8 cut(s) 37, 196, 199, 204, 282, 318, 947, 956
Bme1390I CCNGG 3 cut(s) 103, 614, 630
Bme18I GGWCC 1 cut(s) 453
BmgBI CACGTC 2 cut(s) 724, 754
BmgT120I GGNCC 1 cut(s) 453
BmiI GGNNCC 2 cut(s) 57, 816
BmrFI CCNGG 3 cut(s) 103, 614, 630
BmsI GCATC 1 cut(s) 99
BpmI CTGGAG 1 cut(s) 134
Bpu1102I GCTNAGC 2 cut(s) 254, 602
BpuMI CCSGG 2 cut(s) 614, 630
BsaAI YACGTR 2 cut(s) 154, 914
BsaHI GRCGYC 3 cut(s) 56, 192, 662
BsaI GGTCTC 1 cut(s) 588
BsaJI CCNNGG 4 cut(s) 101, 629, 645, 818
BsaWI WCCGGW 3 cut(s) 439, 450, 488
Bsc4I CCNNNNNNNGG 4 cut(s) 21, 107, 429, 632
Bse118I RCCGGY 4 cut(s) 52, 58, 283, 450
Bse1I ACTGG 1 cut(s) 146
BseBI CCWGG 1 cut(s) 103
BseDI CCNNGG 4 cut(s) 101, 629, 645, 818
BseGI GGATG 2 cut(s) 11, 90
BseLI CCNNNNNNNGG 4 cut(s) 21, 107, 429, 632
BseMII CTCAG 3 cut(s) 268, 581, 593
BseNI ACTGG 1 cut(s) 146
BseRI GAGGAG 3 cut(s) 4, 317, 872
BseSI GKGCMC 2 cut(s) 159, 913
BseXI GCAGC 1 cut(s) 209
BseYI CCCAGC 1 cut(s) 271
Bsh1236I CGCG 2 cut(s) 161, 319
BshFI GGCC 2 cut(s) 62, 290
BshNI GGYRCC 2 cut(s) 55, 814
BshTI ACCGGT 1 cut(s) 450
BsiHKAI GWGCWC 1 cut(s) 363
BsiSI CCGG 8 cut(s) 53, 59, 284, 440, 451, 489, 614, 629
BsiWI CGTACG 1 cut(s) 687
BslFI GGGAC 1 cut(s) 227
BslI CCNNNNNNNGG 4 cut(s) 21, 107, 429, 632
BsmAI GTCTC 2 cut(s) 525, 588
BsmFI GGGAC 1 cut(s) 227
BsnI GGCC 2 cut(s) 62, 290
Bso31I GGTCTC 1 cut(s) 588
Bsp1286I GDGCHC 4 cut(s) 102, 159, 363, 913
Bsp143I GATC 1 cut(s) 651
Bsp1720I GCTNAGC 2 cut(s) 254, 602
BspANI GGCC 2 cut(s) 62, 290
BspCNI CTCAG 3 cut(s) 267, 582, 594
BspFNI CGCG 2 cut(s) 161, 319
BspLI GGNNCC 2 cut(s) 57, 816
BspMI ACCTGC 1 cut(s) 550
BspQI GCTCTTC 2 cut(s) 351, 398
BspT107I GGYRCC 2 cut(s) 55, 814
BspTNI GGTCTC 1 cut(s) 588
BsrBI CCGCTC 2 cut(s) 307, 380
BsrFI RCCGGY 4 cut(s) 52, 58, 283, 450
BsrI ACTGG 1 cut(s) 146
BssAI RCCGGY 4 cut(s) 52, 58, 283, 450
BssECI CCNNGG 4 cut(s) 101, 629, 645, 818
BssMI GATC 1 cut(s) 651
BssNI GRCGYC 3 cut(s) 56, 192, 662
BssT1I CCWWGG 1 cut(s) 818
Bst2UI CCWGG 1 cut(s) 103
Bst4CI ACNGT 2 cut(s) 395, 1064
Bst6I CTCTTC 3 cut(s) 294, 351, 398
BstACI GRCGYC 3 cut(s) 56, 192, 662
BstBAI YACGTR 2 cut(s) 154, 914
BstC8I GCNNGC 6 cut(s) 54, 60, 64, 159, 943, 1072
BstDEI CTNAG 4 cut(s) 40, 254, 590, 602
BstDSI CCRYGG 1 cut(s) 645
BstF5I GGATG 2 cut(s) 11, 90
BstFNI CGCG 2 cut(s) 161, 319
BstH2I RGCGCY 2 cut(s) 59, 203
BstHHI GCGC 4 cut(s) 11, 58, 163, 202
BstKTI GATC 1 cut(s) 654
BstMAI GTCTC 2 cut(s) 525, 588
BstMBI GATC 1 cut(s) 651
BstMWI GCNNNNNNNGC 5 cut(s) 68, 313, 424, 951, 954
BstNI CCWGG 1 cut(s) 103
BstSCI CCNGG 3 cut(s) 101, 612, 628
BstSLI GKGCMC 2 cut(s) 159, 913
BstUI CGCG 2 cut(s) 161, 319
BstV1I GCAGC 1 cut(s) 209
BsuRI GGCC 2 cut(s) 62, 290
BtgI CCRYGG 1 cut(s) 645
BtgZI GCGATG 1 cut(s) 450
BtrI CACGTC 2 cut(s) 724, 754
BtsCI GGATG 2 cut(s) 11, 90
BtsI GCAGTG 1 cut(s) 434
BtsIMutI CAGTG 2 cut(s) 434, 510
BveI ACCTGC 1 cut(s) 550
Cac8I GCNNGC 6 cut(s) 54, 60, 64, 159, 943, 1072
CfoI GCGC 4 cut(s) 11, 58, 163, 202
Cfr10I RCCGGY 4 cut(s) 52, 58, 283, 450
Cfr13I GGNCC 1 cut(s) 453
CpoI CGGWCCG 1 cut(s) 453
CseI GACGC 1 cut(s) 200
Csp6I GTAC 4 cut(s) 149, 677, 688, 739
CspAI ACCGGT 1 cut(s) 450
CspI CGGWCCG 1 cut(s) 453
CviAII CATG 3 cut(s) 415, 979, 1086
CviQI GTAC 4 cut(s) 149, 677, 688, 739
DdeI CTNAG 4 cut(s) 40, 254, 590, 602
DinI GGCGCC 1 cut(s) 57
DpnI GATC 1 cut(s) 653
DpnII GATC 1 cut(s) 651
EaeI YGGCCR 2 cut(s) 60, 288
Eam1104I CTCTTC 3 cut(s) 294, 351, 398
EarI CTCTTC 3 cut(s) 294, 351, 398
EciI GGCGGA 2 cut(s) 615, 697
Ecl136II GAGCTC 1 cut(s) 361
Eco130I CCWWGG 1 cut(s) 818
Eco24I GRGCYC 2 cut(s) 102, 363
Eco31I GGTCTC 1 cut(s) 588
Eco47I GGWCC 1 cut(s) 453
Eco53kI GAGCTC 1 cut(s) 361
Eco57I CTGAAG 1 cut(s) 806
Eco72I CACGTG 2 cut(s) 154, 914
EcoICRI GAGCTC 1 cut(s) 361
EcoRII CCWGG 1 cut(s) 101
EcoT14I CCWWGG 1 cut(s) 818
EcoT38I GRGCYC 2 cut(s) 102, 363
EgeI GGCGCC 1 cut(s) 57
EheI GGCGCC 1 cut(s) 57
ErhI CCWWGG 1 cut(s) 818
FaeI CATG 3 cut(s) 418, 982, 1089
FaiI YATR 6 cut(s) 416, 518, 524, 843, 980, 1087
FaqI GGGAC 1 cut(s) 227
FatI CATG 3 cut(s) 414, 978, 1085
FauI CCCGC 3 cut(s) 166, 606, 950
Fnu4HI GCNGC 8 cut(s) 36, 195, 198, 203, 281, 317, 946, 955
FokI GGATG 2 cut(s) 18, 77
FriOI GRGCYC 2 cut(s) 102, 363
Fsp4HI GCNGC 8 cut(s) 36, 195, 198, 203, 281, 317, 946, 955
FspBI CTAG 2 cut(s) 353, 819
GlaI GCGC 4 cut(s) 10, 57, 162, 201
GluI GCNGC 8 cut(s) 36, 195, 198, 203, 281, 317, 946, 955
GsaI CCCAGC 1 cut(s) 275
GsuI CTGGAG 1 cut(s) 134
HaeII RGCGCY 2 cut(s) 59, 203
HaeIII GGCC 2 cut(s) 62, 290
HapII CCGG 8 cut(s) 53, 59, 284, 440, 451, 489, 614, 629
HgaI GACGC 1 cut(s) 200
HhaI GCGC 4 cut(s) 11, 58, 163, 202
Hin1I GRCGYC 3 cut(s) 56, 192, 662
Hin1II CATG 3 cut(s) 418, 982, 1089
Hin6I GCGC 4 cut(s) 9, 56, 161, 200
HinP1I GCGC 4 cut(s) 9, 56, 161, 200
HinfI GANTC 5 cut(s) 185, 238, 338, 410, 641
HpaII CCGG 8 cut(s) 53, 59, 284, 440, 451, 489, 614, 629
HphI GGTGA 3 cut(s) 232, 580, 661
Hpy166II GTNNAC 4 cut(s) 151, 727, 739, 1060
Hpy188I TCNGA 4 cut(s) 190, 384, 457, 777
Hpy188III TCNNGA 2 cut(s) 113, 353
Hpy8I GTNNAC 4 cut(s) 151, 727, 739, 1060
Hpy99I CGWCG 4 cut(s) 185, 194, 664, 667
HpyAV CCTTC 9 cut(s) 289, 352, 502, 544, 548, 781, 826, 879, 1015
HpyCH4III ACNGT 2 cut(s) 395, 1064
HpyCH4IV ACGT 7 cut(s) 153, 209, 662, 686, 723, 753, 913
HpyCH4V TGCA 3 cut(s) 427, 763, 978
HpyF10VI GCNNNNNNNGC 5 cut(s) 68, 313, 424, 951, 954
HpyF3I CTNAG 4 cut(s) 40, 254, 590, 602
HpySE526I ACGT 7 cut(s) 153, 209, 662, 686, 723, 753, 913
Hsp92I GRCGYC 3 cut(s) 56, 192, 662
Hsp92II CATG 3 cut(s) 418, 982, 1089
HspAI GCGC 4 cut(s) 9, 56, 161, 200
KasI GGCGCC 1 cut(s) 55
KroI GCCGGC 2 cut(s) 52, 58
KroNI GCCGGC 2 cut(s) 54, 60
Kzo9I GATC 1 cut(s) 651
LguI GCTCTTC 2 cut(s) 351, 398
LmnI GCTCC 4 cut(s) 304, 385, 635, 781
Lsp1109I GCAGC 1 cut(s) 209
LweI GCATC 1 cut(s) 99
MaeI CTAG 2 cut(s) 353, 819
MaeII ACGT 7 cut(s) 153, 209, 662, 686, 723, 753, 913
MaeIII GTNAC 1 cut(s) 749
MalI GATC 1 cut(s) 653
MbiI CCGCTC 2 cut(s) 307, 380
MboI GATC 1 cut(s) 651
MboII GAAGA 5 cut(s) 311, 368, 412, 415, 445
MhlI GDGCHC 4 cut(s) 102, 159, 363, 913
MlsI TGGCCA 1 cut(s) 290
MluNI TGGCCA 1 cut(s) 290
Mly113I GGCGCC 1 cut(s) 56
MlyI GAGTC 4 cut(s) 194, 332, 419, 635
MmeI TCCRAC 1 cut(s) 213
Mox20I TGGCCA 1 cut(s) 290
MroNI GCCGGC 2 cut(s) 52, 58
MroXI GAANNNNTTC 1 cut(s) 518
MscI TGGCCA 1 cut(s) 290
MseI TTAA 1 cut(s) 446
Msp20I TGGCCA 1 cut(s) 290
MspA1I CMGCKG 1 cut(s) 601
MspI CCGG 8 cut(s) 53, 59, 284, 440, 451, 489, 614, 629
MspR9I CCNGG 3 cut(s) 103, 614, 630
MvaI CCWGG 1 cut(s) 103
MvnI CGCG 2 cut(s) 161, 319
MwoI GCNNNNNNNGC 5 cut(s) 68, 313, 424, 951, 954
NaeI GCCGGC 2 cut(s) 54, 60
NarI GGCGCC 1 cut(s) 56
NciI CCSGG 2 cut(s) 614, 630
NdeII GATC 1 cut(s) 651
NgoMIV GCCGGC 2 cut(s) 52, 58
NlaIII CATG 3 cut(s) 418, 982, 1089
NlaIV GGNNCC 2 cut(s) 57, 816
NmuCI GTSAC 1 cut(s) 749
PaqCI CACCTGC 1 cut(s) 550
PciSI GCTCTTC 2 cut(s) 351, 398
PcsI WCGNNNNNNNCGW 2 cut(s) 177, 186
PdiI GCCGGC 2 cut(s) 54, 60
PdmI GAANNNNTTC 1 cut(s) 518
PfeI GAWTC 1 cut(s) 238
Pfl23II CGTACG 1 cut(s) 687
PinAI ACCGGT 1 cut(s) 450
PkrI GCNGC 8 cut(s) 37, 196, 199, 204, 282, 318, 947, 956
PleI GAGTC 4 cut(s) 193, 332, 418, 635
PluTI GGCGCC 1 cut(s) 59
PmaCI CACGTG 2 cut(s) 154, 914
PmlI CACGTG 2 cut(s) 154, 914
PpsI GAGTC 4 cut(s) 193, 332, 418, 635
Ppu21I YACGTR 2 cut(s) 154, 914
Psp124BI GAGCTC 1 cut(s) 363
Psp6I CCWGG 1 cut(s) 101
PspCI CACGTG 2 cut(s) 154, 914
PspFI CCCAGC 1 cut(s) 271
PspGI CCWGG 1 cut(s) 101
PspLI CGTACG 1 cut(s) 687
PspN4I GGNNCC 2 cut(s) 57, 816
PspPI GGNCC 1 cut(s) 453
RsaI GTAC 4 cut(s) 150, 678, 689, 740
RsaNI GTAC 4 cut(s) 149, 677, 688, 739
Rsr2I CGGWCCG 1 cut(s) 453
RsrII CGGWCCG 1 cut(s) 453
SacI GAGCTC 1 cut(s) 363
SapI GCTCTTC 2 cut(s) 351, 398
SaqAI TTAA 1 cut(s) 446
SatI GCNGC 8 cut(s) 36, 195, 198, 203, 281, 317, 946, 955
Sau3AI GATC 1 cut(s) 651
Sau96I GGNCC 1 cut(s) 453
SchI GAGTC 4 cut(s) 194, 332, 419, 635
ScrFI CCNGG 3 cut(s) 103, 614, 630
SduI GDGCHC 4 cut(s) 102, 159, 363, 913
SfaNI GCATC 1 cut(s) 99
SfoI GGCGCC 1 cut(s) 57
SgrAI CRCCGGYG 1 cut(s) 283
SinI GGWCC 1 cut(s) 453
SspDI GGCGCC 1 cut(s) 55
SspMI CTAG 2 cut(s) 353, 819
SstI GAGCTC 1 cut(s) 363
StyD4I CCNGG 3 cut(s) 101, 612, 628
StyI CCWWGG 1 cut(s) 818
TaaI ACNGT 2 cut(s) 395, 1064
TaiI ACGT 7 cut(s) 156, 212, 665, 689, 726, 756, 916
TaqI TCGA 4 cut(s) 171, 180, 336, 363
TaqII GACCGA 1 cut(s) 98
TatI WGTACW 1 cut(s) 148
TauI GCSGC 7 cut(s) 38, 197, 205, 283, 319, 948, 957
TfiI GAWTC 1 cut(s) 238
Tru1I TTAA 1 cut(s) 446
Tru9I TTAA 1 cut(s) 446
TscAI CASTG 2 cut(s) 434, 510
TseFI GTSAC 1 cut(s) 749
TseI GCWGC 1 cut(s) 197
Tsp45I GTSAC 1 cut(s) 749
TspDTI ATGAA 1 cut(s) 511
TspGWI ACGGA 2 cut(s) 634, 794
TspRI CASTG 2 cut(s) 434, 510
VpaK11BI GGWCC 1 cut(s) 453
XbaI TCTAGA 1 cut(s) 352
XmaJI CCTAGG 1 cut(s) 818
XmnI GAANNNNTTC 1 cut(s) 518
XspI CTAG 2 cut(s) 353, 819
ZraI GACGTC 1 cut(s) 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.