Rroxscaffold_3G00261550

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0014483
Physical Location & Seq
Forward (+)
55799234 .. 55800144
911 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00261550.1

Sequence Viewer

Length: 828 bp
ATGGGATGCGCCTCCTCGAAACGGGTAGAGGCAGCCGTAGATTACAAGCCGGCGCCGGCGAGCTTCGCGGTCTTCAACATCAACGGCATCCAAGAGCCCTGGCTCGGCCTTGAGAATACGACGTCGCAGCAGGAGGAAACCGAAAAACCAGTACACGTGCCCGCGCAAATCCTCGACAAGCTCGATGAGTCCGACGCCGCGGCCGCGCCGCAAACGTGGGATGAGGTCAGTAAGGCCTTAGAGAACCTCAAGCCCAATCTCAGCCCAAAGCCGAGCCCAGCACCGCCACCGGTGATCAAGAAGGAGCCGGAAGAGGAGCGAAGGAAGCCGCGTAAGAGCTTGTCTTTTGACTCCTTCCACACTCTAGAAGAGCTCGACAAAAAGCTCACCGCTCCGAAGACGGCCGGGTTGAAAAAGAGCGAGTCGATGAATTCGTTGCAGAGGAAGAAACCCGAACCAATCAACCGGTCCCGCTCACCACTCGGAATGCCATCGCCAGACACACAAACCCAAACCGAGTCGACGGTGGGATACAAGTCTGTGAAGGAGAACATTTTTATAAAGAGGGACAGAATGGAGAGACAAAAAGAAGGGCAGGTGGCGGTGATTGACAAGCTGATAAGCCTGAGAGATCCTCTCAGCGACTACCCGGAGAAATGTCCACCGGGGGGGGAGCCGAGTCCGTGGCTGGTGTACGACGAGCGTGACGTGTCGCTGCACGGCGAGTTTCTGACGGAGCTGAAGGGTTTGGTGGGTGAGGGGCTGGGGGTGCCTAGGGTTTTTGTGAAGGGGAGGTATGTGGGGGAGTGGAGGAGGTGGTGGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

275

Amino Acids

30.85

Weight (kDa)

6.87

Isoelectric Point (pI)

59.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014483)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64500
fragaria_vesca FvH4_5g04960
malus_domestica MD06G1110300.v1.1
prunus_persica Prupe.5G123100_v2.0.a1
pyrus_communis pycom06g10360
rosa_chinensis RchiOBHm_Chr7g0194111
rosa_laevigata RLG00000004217
rosa_multiflora Rmu_sc0003468.1_g000003 Rmu_sc0007117.1_g000001 Rmu_sc0009433.1_g000004
rosa_roxburghii Rroxscaffold_3G00261550
rosa_rugosa Rorug07G0013800
rosa_samantha Rh7AG140900 Rh7BG141600 Rh7CG145000 Rh7DG142400
rosa_wichuraiana Rw7G012050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 560
AarI CACCTGC 1 cut(s) 586
AatII GACGTC 1 cut(s) 125
Acc36I ACCTGC 1 cut(s) 586
AccB1I GGYRCC 2 cut(s) 52, 769
AccBSI CCGCTC 2 cut(s) 392, 474
AccI GTMKAC 1 cut(s) 521
AccII CGCG 5 cut(s) 68, 164, 200, 206, 331
AclWI GGATC 1 cut(s) 626
AcoI YGGCCR 2 cut(s) 201, 402
AcsI RAATTY 1 cut(s) 430
AcuI CTGAAG 1 cut(s) 761
AcvI CACGTG 1 cut(s) 157
AcyI GRCGYC 3 cut(s) 53, 122, 195
AfaI GTAC 2 cut(s) 153, 695
AfiI CCNNNNNNNGG 3 cut(s) 21, 104, 668
AflIII ACRYGT 2 cut(s) 154, 708
AgeI ACCGGT 2 cut(s) 289, 465
AgsI TTSAA 2 cut(s) 76, 412
AjiI CACGTC 1 cut(s) 709
AjnI CCWGG 1 cut(s) 98
AluBI AGCT 8 cut(s) 63, 181, 339, 373, 385, 616, 739, 825
AluI AGCT 8 cut(s) 63, 181, 339, 373, 385, 616, 739, 825
Alw21I GWGCWC 1 cut(s) 375
Alw26I GTCTC 1 cut(s) 574
AlwI GGATC 1 cut(s) 626
AoxI GGCC 4 cut(s) 106, 201, 234, 402
ApeKI GCWGC 3 cut(s) 32, 127, 715
ApoI RAATTY 1 cut(s) 430
AsiGI ACCGGT 2 cut(s) 289, 465
AspA2I CCTAGG 1 cut(s) 773
AspLEI GCGC 4 cut(s) 11, 55, 166, 208
AspS9I GGNCC 1 cut(s) 468
AsuC2I CCSGG 3 cut(s) 406, 650, 666
AsuHPI GGTGA 5 cut(s) 304, 379, 468, 616, 767
AvaII GGWCC 1 cut(s) 468
AvrII CCTAGG 1 cut(s) 773
BaeGI GKGCMC 1 cut(s) 162
BanI GGYRCC 2 cut(s) 52, 769
BanII GRGCYC 3 cut(s) 99, 278, 375
BbrPI CACGTG 1 cut(s) 157
BbsI GAAGAC 2 cut(s) 64, 404
Bbv12I GWGCWC 1 cut(s) 375
BbvI GCAGC 3 cut(s) 44, 139, 702
BccI CCATC 1 cut(s) 499
BceAI ACGGC 4 cut(s) 20, 100, 417, 736
BciT130I CCWGG 1 cut(s) 100
BciVI GTATCC 1 cut(s) 524
BclI TGATCA 1 cut(s) 294
BcnI CCSGG 3 cut(s) 406, 650, 666
BcoDI GTCTC 1 cut(s) 574
BfaI CTAG 2 cut(s) 365, 774
BfoI RGCGCY 1 cut(s) 56
BfuAI ACCTGC 1 cut(s) 586
BfuI GTATCC 1 cut(s) 524
BisI GCNGC 8 cut(s) 33, 128, 198, 201, 204, 209, 329, 716
BlnI CCTAGG 1 cut(s) 773
BlsI GCNGC 8 cut(s) 34, 129, 199, 202, 205, 210, 330, 717
Bme1390I CCNGG 4 cut(s) 100, 406, 650, 666
Bme18I GGWCC 1 cut(s) 468
BmgBI CACGTC 1 cut(s) 709
BmgT120I GGNCC 1 cut(s) 468
BmiI GGNNCC 5 cut(s) 54, 306, 470, 675, 771
BmrFI CCNGG 4 cut(s) 100, 406, 650, 666
BmsI GCATC 1 cut(s) 96
BpiI GAAGAC 2 cut(s) 64, 404
BplI GAGNNNNNCTC 4 cut(s) 619, 651, 621, 653
BpuEI CTTGAG 2 cut(s) 131, 233
BpuMI CCSGG 3 cut(s) 406, 650, 666
BsaAI YACGTR 1 cut(s) 157
BsaHI GRCGYC 3 cut(s) 53, 122, 195
BsaJI CCNNGG 5 cut(s) 98, 198, 665, 683, 773
BsaWI WCCGGW 2 cut(s) 289, 465
Bsc4I CCNNNNNNNGG 3 cut(s) 21, 104, 668
Bse118I RCCGGY 4 cut(s) 49, 55, 289, 465
Bse1I ACTGG 1 cut(s) 149
BseBI CCWGG 1 cut(s) 100
BseDI CCNNGG 5 cut(s) 98, 198, 665, 683, 773
BseGI GGATG 3 cut(s) 11, 87, 226
BseLI CCNNNNNNNGG 3 cut(s) 21, 104, 668
BseMII CTCAG 3 cut(s) 274, 617, 652
BseNI ACTGG 1 cut(s) 149
BseRI GAGGAG 3 cut(s) 4, 329, 826
BseSI GKGCMC 1 cut(s) 162
BseX3I CGGCCG 2 cut(s) 201, 402
BseXI GCAGC 3 cut(s) 44, 139, 702
BseYI CCCAGC 2 cut(s) 277, 763
BsgI GTGCAG 1 cut(s) 701
Bsh1236I CGCG 5 cut(s) 68, 164, 200, 206, 331
Bsh1285I CGRYCG 2 cut(s) 204, 405
BshFI GGCC 4 cut(s) 108, 203, 236, 404
BshNI GGYRCC 2 cut(s) 52, 769
BshTI ACCGGT 2 cut(s) 289, 465
BsiEI CGRYCG 2 cut(s) 204, 405
BsiHKAI GWGCWC 1 cut(s) 375
BsiSI CCGG 8 cut(s) 50, 56, 290, 308, 405, 466, 650, 665
BslFI GGGAC 2 cut(s) 454, 581
BslI CCNNNNNNNGG 3 cut(s) 21, 104, 668
BsmAI GTCTC 1 cut(s) 574
BsmFI GGGAC 2 cut(s) 454, 581
BsmI GAATGC 1 cut(s) 492
BsnI GGCC 4 cut(s) 108, 203, 236, 404
Bsp1286I GDGCHC 4 cut(s) 99, 162, 278, 375
Bsp143I GATC 2 cut(s) 294, 631
BspANI GGCC 4 cut(s) 108, 203, 236, 404
BspCNI CTCAG 3 cut(s) 273, 618, 651
BspFNI CGCG 5 cut(s) 68, 164, 200, 206, 331
BspLI GGNNCC 5 cut(s) 54, 306, 470, 675, 771
BspMI ACCTGC 1 cut(s) 586
BspPI GGATC 1 cut(s) 626
BspQI GCTCTTC 1 cut(s) 363
BspT107I GGYRCC 2 cut(s) 52, 769
BsrBI CCGCTC 2 cut(s) 392, 474
BsrFI RCCGGY 4 cut(s) 49, 55, 289, 465
BsrI ACTGG 1 cut(s) 149
BssAI RCCGGY 4 cut(s) 49, 55, 289, 465
BssECI CCNNGG 5 cut(s) 98, 198, 665, 683, 773
BssMI GATC 2 cut(s) 294, 631
BssNI GRCGYC 3 cut(s) 53, 122, 195
BssT1I CCWWGG 1 cut(s) 773
Bst2UI CCWGG 1 cut(s) 100
Bst4CI ACNGT 1 cut(s) 526
Bst6I CTCTTC 2 cut(s) 306, 363
BstACI GRCGYC 3 cut(s) 53, 122, 195
BstBAI YACGTR 1 cut(s) 157
BstC8I GCNNGC 4 cut(s) 51, 57, 61, 162
BstDEI CTNAG 4 cut(s) 238, 260, 626, 638
BstDSI CCRYGG 2 cut(s) 198, 683
BstF5I GGATG 3 cut(s) 11, 87, 226
BstFNI CGCG 5 cut(s) 68, 164, 200, 206, 331
BstH2I RGCGCY 1 cut(s) 56
BstHHI GCGC 4 cut(s) 11, 55, 166, 208
BstKTI GATC 2 cut(s) 297, 634
BstMAI GTCTC 1 cut(s) 574
BstMBI GATC 2 cut(s) 294, 631
BstMCI CGRYCG 2 cut(s) 204, 405
BstMWI GCNNNNNNNGC 4 cut(s) 65, 203, 325, 769
BstNI CCWGG 1 cut(s) 100
BstSCI CCNGG 4 cut(s) 98, 404, 648, 664
BstSLI GKGCMC 1 cut(s) 162
BstUI CGCG 5 cut(s) 68, 164, 200, 206, 331
BstV1I GCAGC 3 cut(s) 44, 139, 702
BstV2I GAAGAC 2 cut(s) 64, 404
BstX2I RGATCY 1 cut(s) 631
BstYI RGATCY 1 cut(s) 631
BstZI CGGCCG 2 cut(s) 201, 402
BsuI GTATCC 1 cut(s) 524
BsuRI GGCC 4 cut(s) 108, 203, 236, 404
BtgI CCRYGG 2 cut(s) 198, 683
BtgZI GCGATG 1 cut(s) 477
BtrI CACGTC 1 cut(s) 709
BtsCI GGATG 3 cut(s) 11, 87, 226
BveI ACCTGC 1 cut(s) 586
Cac8I GCNNGC 4 cut(s) 51, 57, 61, 162
CciNI GCGGCCGC 1 cut(s) 201
CfoI GCGC 4 cut(s) 11, 55, 166, 208
Cfr10I RCCGGY 4 cut(s) 49, 55, 289, 465
Cfr13I GGNCC 1 cut(s) 468
Cfr42I CCGCGG 1 cut(s) 201
CseI GACGC 1 cut(s) 203
Csp6I GTAC 2 cut(s) 152, 694
CspAI ACCGGT 2 cut(s) 289, 465
CviQI GTAC 2 cut(s) 152, 694
DdeI CTNAG 4 cut(s) 238, 260, 626, 638
DinI GGCGCC 1 cut(s) 54
DpnI GATC 2 cut(s) 296, 633
DpnII GATC 2 cut(s) 294, 631
EaeI YGGCCR 2 cut(s) 201, 402
EagI CGGCCG 2 cut(s) 201, 402
Eam1104I CTCTTC 2 cut(s) 306, 363
EarI CTCTTC 2 cut(s) 306, 363
Ecl136II GAGCTC 1 cut(s) 373
EclXI CGGCCG 2 cut(s) 201, 402
Eco130I CCWWGG 1 cut(s) 773
Eco147I AGGCCT 1 cut(s) 236
Eco24I GRGCYC 3 cut(s) 99, 278, 375
Eco47I GGWCC 1 cut(s) 468
Eco52I CGGCCG 2 cut(s) 201, 402
Eco53kI GAGCTC 1 cut(s) 373
Eco57I CTGAAG 1 cut(s) 761
Eco72I CACGTG 1 cut(s) 157
EcoICRI GAGCTC 1 cut(s) 373
EcoRI GAATTC 1 cut(s) 430
EcoRII CCWGG 1 cut(s) 98
EcoT14I CCWWGG 1 cut(s) 773
EcoT38I GRGCYC 3 cut(s) 99, 278, 375
EgeI GGCGCC 1 cut(s) 54
EheI GGCGCC 1 cut(s) 54
ErhI CCWWGG 1 cut(s) 773
FaiI YATR 2 cut(s) 560, 798
FaqI GGGAC 2 cut(s) 454, 581
FauI CCCGC 2 cut(s) 169, 479
FbaI TGATCA 1 cut(s) 294
FblI GTMKAC 1 cut(s) 521
Fnu4HI GCNGC 8 cut(s) 33, 128, 198, 201, 204, 209, 329, 716
FokI GGATG 3 cut(s) 18, 74, 233
FriOI GRGCYC 3 cut(s) 99, 278, 375
Fsp4HI GCNGC 8 cut(s) 33, 128, 198, 201, 204, 209, 329, 716
FspBI CTAG 2 cut(s) 365, 774
GlaI GCGC 4 cut(s) 10, 54, 165, 207
GluI GCNGC 8 cut(s) 33, 128, 198, 201, 204, 209, 329, 716
GsaI CCCAGC 2 cut(s) 281, 767
HaeII RGCGCY 1 cut(s) 56
HaeIII GGCC 4 cut(s) 108, 203, 236, 404
HapII CCGG 8 cut(s) 50, 56, 290, 308, 405, 466, 650, 665
HgaI GACGC 1 cut(s) 203
HhaI GCGC 4 cut(s) 11, 55, 166, 208
Hin1I GRCGYC 3 cut(s) 53, 122, 195
Hin6I GCGC 4 cut(s) 9, 53, 164, 206
HinP1I GCGC 4 cut(s) 9, 53, 164, 206
HincII GTYRAC 1 cut(s) 522
HindII GTYRAC 1 cut(s) 522
HinfI GANTC 5 cut(s) 188, 350, 422, 518, 679
HpaII CCGG 8 cut(s) 50, 56, 290, 308, 405, 466, 650, 665
HphI GGTGA 5 cut(s) 304, 379, 468, 616, 767
Hpy166II GTNNAC 4 cut(s) 154, 522, 662, 694
Hpy188I TCNGA 4 cut(s) 193, 396, 485, 732
Hpy188III TCNNGA 2 cut(s) 298, 365
Hpy8I GTNNAC 4 cut(s) 154, 522, 662, 694
Hpy99I CGWCG 5 cut(s) 124, 127, 197, 526, 701
HpyAV CCTTC 7 cut(s) 295, 315, 364, 538, 584, 736, 781
HpyCH4III ACNGT 1 cut(s) 526
HpyCH4IV ACGT 4 cut(s) 122, 156, 215, 708
HpyCH4V TGCA 2 cut(s) 439, 718
HpyF10VI GCNNNNNNNGC 4 cut(s) 65, 203, 325, 769
HpyF3I CTNAG 4 cut(s) 238, 260, 626, 638
HpySE526I ACGT 4 cut(s) 122, 156, 215, 708
Hsp92I GRCGYC 3 cut(s) 53, 122, 195
HspAI GCGC 4 cut(s) 9, 53, 164, 206
KasI GGCGCC 1 cut(s) 52
KroI GCCGGC 2 cut(s) 49, 55
KroNI GCCGGC 2 cut(s) 51, 57
Ksp22I TGATCA 1 cut(s) 294
KspI CCGCGG 1 cut(s) 201
Kzo9I GATC 2 cut(s) 294, 631
LguI GCTCTTC 1 cut(s) 363
LmnI GCTCC 6 cut(s) 304, 316, 397, 673, 736, 822
Lsp1109I GCAGC 3 cut(s) 44, 139, 702
LweI GCATC 1 cut(s) 96
MaeI CTAG 2 cut(s) 365, 774
MaeII ACGT 4 cut(s) 122, 156, 215, 708
MaeIII GTNAC 1 cut(s) 704
MalI GATC 2 cut(s) 296, 633
MbiI CCGCTC 2 cut(s) 392, 474
MboI GATC 2 cut(s) 294, 631
MboII GAAGA 5 cut(s) 64, 323, 380, 409, 457
MflI RGATCY 1 cut(s) 631
MhlI GDGCHC 4 cut(s) 99, 162, 278, 375
MluCI AATT 1 cut(s) 430
Mly113I GGCGCC 1 cut(s) 53
MlyI GAGTC 5 cut(s) 197, 344, 431, 527, 688
MmeI TCCRAC 1 cut(s) 216
MreI CGCCGGCG 1 cut(s) 55
MroNI GCCGGC 2 cut(s) 49, 55
MspA1I CMGCKG 1 cut(s) 200
MspI CCGG 8 cut(s) 50, 56, 290, 308, 405, 466, 650, 665
MspR9I CCNGG 4 cut(s) 100, 406, 650, 666
Mva1269I GAATGC 1 cut(s) 492
MvaI CCWGG 1 cut(s) 100
MvnI CGCG 5 cut(s) 68, 164, 200, 206, 331
MwoI GCNNNNNNNGC 4 cut(s) 65, 203, 325, 769
NaeI GCCGGC 2 cut(s) 51, 57
NarI GGCGCC 1 cut(s) 53
NciI CCSGG 3 cut(s) 406, 650, 666
NdeII GATC 2 cut(s) 294, 631
NgoMIV GCCGGC 2 cut(s) 49, 55
NlaIV GGNNCC 5 cut(s) 54, 306, 470, 675, 771
NmeAIII GCCGAG 3 cut(s) 84, 297, 702
NmuCI GTSAC 1 cut(s) 704
NotI GCGGCCGC 1 cut(s) 201
PaqCI CACCTGC 1 cut(s) 586
PceI AGGCCT 1 cut(s) 236
PciSI GCTCTTC 1 cut(s) 363
PcsI WCGNNNNNNNCGW 4 cut(s) 180, 189, 431, 705
PctI GAATGC 1 cut(s) 492
PdiI GCCGGC 2 cut(s) 51, 57
PinAI ACCGGT 2 cut(s) 289, 465
PkrI GCNGC 8 cut(s) 34, 129, 199, 202, 205, 210, 330, 717
PleI GAGTC 5 cut(s) 196, 344, 430, 526, 687
PluTI GGCGCC 1 cut(s) 56
PmaCI CACGTG 1 cut(s) 157
PmlI CACGTG 1 cut(s) 157
PpsI GAGTC 5 cut(s) 196, 344, 430, 526, 687
Ppu21I YACGTR 1 cut(s) 157
PsiI TTATAA 1 cut(s) 560
Psp124BI GAGCTC 1 cut(s) 375
Psp6I CCWGG 1 cut(s) 98
PspCI CACGTG 1 cut(s) 157
PspFI CCCAGC 2 cut(s) 277, 763
PspGI CCWGG 1 cut(s) 98
PspN4I GGNNCC 5 cut(s) 54, 306, 470, 675, 771
PspPI GGNCC 1 cut(s) 468
PsuI RGATCY 1 cut(s) 631
RsaI GTAC 2 cut(s) 153, 695
RsaNI GTAC 2 cut(s) 152, 694
SacI GAGCTC 1 cut(s) 375
SacII CCGCGG 1 cut(s) 201
SalI GTCGAC 1 cut(s) 520
SapI GCTCTTC 1 cut(s) 363
SatI GCNGC 8 cut(s) 33, 128, 198, 201, 204, 209, 329, 716
Sau3AI GATC 2 cut(s) 294, 631
Sau96I GGNCC 1 cut(s) 468
SchI GAGTC 5 cut(s) 197, 344, 431, 527, 688
ScrFI CCNGG 4 cut(s) 100, 406, 650, 666
SduI GDGCHC 4 cut(s) 99, 162, 278, 375
SfaNI GCATC 1 cut(s) 96
SfoI GGCGCC 1 cut(s) 54
Sfr303I CCGCGG 1 cut(s) 201
SgrAI CRCCGGYG 2 cut(s) 55, 289
SgrBI CCGCGG 1 cut(s) 201
SinI GGWCC 1 cut(s) 468
SmlI CTYRAG 2 cut(s) 110, 248
SmoI CTYRAG 2 cut(s) 110, 248
Sse9I AATT 1 cut(s) 430
SseBI AGGCCT 1 cut(s) 236
SspDI GGCGCC 1 cut(s) 52
SspMI CTAG 2 cut(s) 365, 774
SstI GAGCTC 1 cut(s) 375
StuI AGGCCT 1 cut(s) 236
StyD4I CCNGG 4 cut(s) 98, 404, 648, 664
StyI CCWWGG 1 cut(s) 773
TaaI ACNGT 1 cut(s) 526
TaiI ACGT 4 cut(s) 125, 159, 218, 711
TaqI TCGA 6 cut(s) 17, 174, 183, 375, 425, 521
TasI AATT 1 cut(s) 430
TatI WGTACW 1 cut(s) 151
TauI GCSGC 5 cut(s) 200, 203, 206, 211, 331
TseFI GTSAC 1 cut(s) 704
TseI GCWGC 3 cut(s) 32, 127, 715
Tsp45I GTSAC 1 cut(s) 704
TspDTI ATGAA 1 cut(s) 443
TspGWI ACGGA 2 cut(s) 672, 749
VpaK11BI GGWCC 1 cut(s) 468
XapI RAATTY 1 cut(s) 430
XbaI TCTAGA 1 cut(s) 364
XmaJI CCTAGG 1 cut(s) 773
XmiI GTMKAC 1 cut(s) 521
XspI CTAG 2 cut(s) 365, 774
ZraI GACGTC 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.