pycom06g10360

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0014483
Physical Location & Seq
Forward (+)
15696798 .. 15697961
1164 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g10360.1

Sequence Viewer

Length: 1164 bp
ATGGGCTGTGCCTCCTCGAAACGAATAGAGGCAGCAGCCGTGGATTACAAGCCGGCACCAGCGAGCTACGCCGTCTTTGATATCAACACCGTCCAAGAGCCCTGGCTCGTATTCGACAATACAACGTCGCAGGAGCAGGAGCAGCAGCAAAGCCACGAAAAGACCGCGCACATGCCCGCCCAAATCCTCGACAAGCTCAACTCGTTCGAAAACGAAGCGGGGGTAGCCGCCCCTCACACATGGGACGAAGTCAGCAAGGCCTTAGAGGACCTGAAGCCCAATATCAGGCCCAAACCCAAGTCCGAGCCCGATACCCAGCCCGAACAGAGCCCATCACCAGCCCAGAACGAACCGGCTAGCAGGAAGCCGCGCAAGAGCGCGTCCTTCCACACGCTCGAAGAGCTCGACGCGAGACACACGGCGAAGCCGACTCCGTTGAAAAAGAGTGAGTCGATGCGGTCCGCGTGGAAGAAACCCGTCCCCGCTGAGCCGGCCCGGTTCGAGTCACGAGCTGACACGGCGGCGGCTGAGTCGACGACGACAGTCATAAAGTCGGTGAGGGATAATATGTTTATAATGAGGGACAGGATGGAGAGAGAGAAAGAGGGAAAGCTGGCGGCTTACGATAGGATGATGAAGACCAGGCGGGACCCCCTGAGCGAGTACCCGGAGAAGTGTCCGCCGGGCGGGGCGGAATCTGTGGTGGTGTACACGACGTCGTTGAGGGGCGTGCGGCGGACGTTCGAGGACTGCAGTAAGGTGAAGGGGATTATGGAGGGGCACAGGATCGTGTACGACGAGCGTGACGTGGCGCTGCACGGGGAGTTTTTGGGTGAGTTGAAGGGATTGCTGGGTGGGGAGAGTAGTGGCAGTGATGGTAATAACGTGAGCGTACCGAGGGTTTTTGTGAAGGGGAGGTATATTGGGGGAGTGGATGAGATCGTGGAGCTGAATGAGTCGGGCGTATTTGGCAGGATGGTGAAGCTGGCACGTGTGGAGAGAGGGGTGGGGTGGAAAGTGTGCGAGGGGTGTGGTGGGGCCAGGTTTGTGCCGTGTATGGAGTGCGGAGGGAGTTGTAAAGTGGTGGTTGGGGATAAGAGGGAGAGGTGCCCCAAGTGTAACGAGAATGGACTAGTGCACTGCGTGGCTTGTTGGTCATCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

388

Amino Acids

42.75

Weight (kDa)

7.07

Isoelectric Point (pI)

46.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 234 - 308 2.4e-09 Glutaredoxin
GRXCR1-2_C PF23733 341 - 384 2.9e-16 GRXCR1/2, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014483)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64500
fragaria_vesca FvH4_5g04960
malus_domestica MD06G1110300.v1.1
prunus_persica Prupe.5G123100_v2.0.a1
pyrus_communis pycom06g10360
rosa_chinensis RchiOBHm_Chr7g0194111
rosa_laevigata RLG00000004217
rosa_multiflora Rmu_sc0003468.1_g000003 Rmu_sc0007117.1_g000001 Rmu_sc0009433.1_g000004
rosa_roxburghii Rroxscaffold_3G00261550
rosa_rugosa Rorug07G0013800
rosa_samantha Rh7AG140900 Rh7BG141600 Rh7CG145000 Rh7DG142400
rosa_wichuraiana Rw7G012050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 575
AatII GACGTC 1 cut(s) 719
AccB1I GGYRCC 2 cut(s) 55, 1107
AccI GTMKAC 1 cut(s) 533
AccII CGCG 5 cut(s) 167, 370, 380, 410, 464
AclWI GGATC 1 cut(s) 794
AcuI CTGAAG 1 cut(s) 293
AcvI CACGTG 1 cut(s) 992
AcyI GRCGYC 1 cut(s) 716
AdeI CACNNNGTG 1 cut(s) 1144
AfaI GTAC 4 cut(s) 665, 710, 794, 894
AfiI CCNNNNNNNGG 2 cut(s) 285, 686
AflIII ACRYGT 1 cut(s) 991
AgsI TTSAA 2 cut(s) 439, 841
AhlI ACTAGT 1 cut(s) 1132
AjiI CACGTC 1 cut(s) 808
AjnI CCWGG 3 cut(s) 101, 641, 1040
AluBI AGCT 7 cut(s) 66, 196, 403, 512, 613, 949, 985
AluI AGCT 7 cut(s) 66, 196, 403, 512, 613, 949, 985
Alw21I GWGCWC 2 cut(s) 405, 1140
Alw26I GTCTC 1 cut(s) 406
Alw44I GTGCAC 1 cut(s) 1136
AlwI GGATC 1 cut(s) 794
AoxI GGCC 4 cut(s) 258, 287, 492, 1038
ApaLI GTGCAC 1 cut(s) 1136
ApeKI GCWGC 5 cut(s) 32, 35, 142, 145, 814
AspLEI GCGC 4 cut(s) 169, 372, 380, 814
AspS9I GGNCC 6 cut(s) 268, 288, 459, 493, 649, 1038
AsuC2I CCSGG 3 cut(s) 496, 668, 684
AsuHPI GGTGA 5 cut(s) 327, 568, 772, 845, 991
AsuII TTCGAA 1 cut(s) 207
AsuNHI GCTAGC 1 cut(s) 356
AvaII GGWCC 3 cut(s) 268, 459, 649
BaeGI GKGCMC 3 cut(s) 783, 1112, 1140
BanI GGYRCC 2 cut(s) 55, 1107
BanII GRGCYC 4 cut(s) 102, 309, 332, 405
BauI CACGAG 1 cut(s) 507
BbrPI CACGTG 1 cut(s) 992
BbsI GAAGAC 1 cut(s) 644
Bbv12I GWGCWC 2 cut(s) 405, 1140
BbvI GCAGC 5 cut(s) 44, 47, 154, 157, 801
BccI CCATC 4 cut(s) 340, 583, 869, 970
BceAI ACGGC 5 cut(s) 23, 56, 435, 534, 1036
BciT130I CCWGG 3 cut(s) 103, 643, 1042
BcnI CCSGG 3 cut(s) 496, 668, 684
BcoDI GTCTC 1 cut(s) 406
BcuI ACTAGT 1 cut(s) 1132
BfaI CTAG 2 cut(s) 357, 1133
BfmI CTRYAG 1 cut(s) 751
BfoI RGCGCY 1 cut(s) 815
BlpI GCTNAGC 1 cut(s) 486
Bme1390I CCNGG 6 cut(s) 103, 496, 643, 668, 684, 1042
Bme18I GGWCC 3 cut(s) 268, 459, 649
BmgBI CACGTC 1 cut(s) 808
BmgT120I GGNCC 6 cut(s) 268, 288, 459, 493, 649, 1038
BmiI GGNNCC 5 cut(s) 57, 650, 651, 1039, 1109
BmrFI CCNGG 6 cut(s) 103, 496, 643, 668, 684, 1042
BmsI GCATC 1 cut(s) 444
BmtI GCTAGC 1 cut(s) 360
BoxI GACNNNNGTC 1 cut(s) 542
BpiI GAAGAC 1 cut(s) 644
Bpu10I CCTNAGC 1 cut(s) 656
Bpu1102I GCTNAGC 1 cut(s) 486
Bpu14I TTCGAA 1 cut(s) 207
BpuMI CCSGG 3 cut(s) 496, 668, 684
BsaAI YACGTR 1 cut(s) 992
BsaHI GRCGYC 1 cut(s) 716
BsaJI CCNNGG 3 cut(s) 39, 101, 896
Bsc4I CCNNNNNNNGG 2 cut(s) 285, 686
Bse118I RCCGGY 3 cut(s) 52, 352, 490
BseBI CCWGG 3 cut(s) 103, 643, 1042
BseDI CCNNGG 3 cut(s) 39, 101, 896
BseGI GGATG 4 cut(s) 594, 636, 940, 981
BseLI CCNNNNNNNGG 2 cut(s) 285, 686
BseMII CTCAG 3 cut(s) 477, 519, 647
BseRI GAGGAG 1 cut(s) 4
BseSI GKGCMC 3 cut(s) 783, 1112, 1140
BseXI GCAGC 5 cut(s) 44, 47, 154, 157, 801
BseYI CCCAGC 2 cut(s) 315, 850
BsgI GTGCAG 1 cut(s) 800
Bsh1236I CGCG 5 cut(s) 167, 370, 380, 410, 464
BshFI GGCC 4 cut(s) 260, 289, 494, 1040
BshNI GGYRCC 2 cut(s) 55, 1107
BsiHKAI GWGCWC 2 cut(s) 405, 1140
BsiSI CCGG 6 cut(s) 53, 353, 491, 496, 668, 683
BslFI GGGAC 4 cut(s) 257, 464, 596, 662
BslI CCNNNNNNNGG 2 cut(s) 285, 686
BsmAI GTCTC 1 cut(s) 406
BsmFI GGGAC 4 cut(s) 257, 464, 596, 662
BsnI GGCC 4 cut(s) 260, 289, 494, 1040
Bsp119I TTCGAA 1 cut(s) 207
Bsp1286I GDGCHC 7 cut(s) 102, 309, 332, 405, 783, 1112, 1140
Bsp1407I TGTACA 1 cut(s) 708
Bsp143I GATC 2 cut(s) 786, 939
Bsp1720I GCTNAGC 1 cut(s) 486
BspANI GGCC 4 cut(s) 260, 289, 494, 1040
BspCNI CTCAG 3 cut(s) 478, 520, 648
BspFNI CGCG 5 cut(s) 167, 370, 380, 410, 464
BspLI GGNNCC 5 cut(s) 57, 650, 651, 1039, 1109
BspMAI CTGCAG 1 cut(s) 755
BspOI GCTAGC 1 cut(s) 360
BspPI GGATC 1 cut(s) 794
BspQI GCTCTTC 1 cut(s) 393
BspT104I TTCGAA 1 cut(s) 207
BspT107I GGYRCC 2 cut(s) 55, 1107
BsrFI RCCGGY 3 cut(s) 52, 352, 490
BsrGI TGTACA 1 cut(s) 708
BssAI RCCGGY 3 cut(s) 52, 352, 490
BssECI CCNNGG 3 cut(s) 39, 101, 896
BssMI GATC 2 cut(s) 786, 939
BssNI GRCGYC 1 cut(s) 716
BssSI CACGAG 1 cut(s) 507
Bst2BI CACGAG 1 cut(s) 507
Bst2UI CCWGG 3 cut(s) 103, 643, 1042
Bst4CI ACNGT 2 cut(s) 91, 544
Bst6I CTCTTC 1 cut(s) 393
BstACI GRCGYC 1 cut(s) 716
BstAUI TGTACA 1 cut(s) 708
BstBAI YACGTR 1 cut(s) 992
BstBI TTCGAA 1 cut(s) 207
BstC8I GCNNGC 8 cut(s) 54, 64, 177, 358, 492, 615, 731, 987
BstDEI CTNAG 4 cut(s) 262, 486, 528, 656
BstDSI CCRYGG 1 cut(s) 39
BstF5I GGATG 4 cut(s) 594, 636, 940, 981
BstFNI CGCG 5 cut(s) 167, 370, 380, 410, 464
BstH2I RGCGCY 1 cut(s) 815
BstHHI GCGC 4 cut(s) 169, 372, 380, 814
BstKTI GATC 2 cut(s) 789, 942
BstMAI GTCTC 1 cut(s) 406
BstMBI GATC 2 cut(s) 786, 939
BstMWI GCNNNNNNNGC 7 cut(s) 68, 142, 224, 400, 491, 518, 969
BstNI CCWGG 3 cut(s) 103, 643, 1042
BstNSI RCATGY 1 cut(s) 175
BstPAI GACNNNNGTC 1 cut(s) 542
BstSCI CCNGG 6 cut(s) 101, 494, 641, 666, 682, 1040
BstSFI CTRYAG 1 cut(s) 751
BstSLI GKGCMC 3 cut(s) 783, 1112, 1140
BstUI CGCG 5 cut(s) 167, 370, 380, 410, 464
BstV1I GCAGC 5 cut(s) 44, 47, 154, 157, 801
BstV2I GAAGAC 1 cut(s) 644
BsuRI GGCC 4 cut(s) 260, 289, 494, 1040
BtgI CCRYGG 1 cut(s) 39
BtrI CACGTC 1 cut(s) 808
BtsCI GGATG 4 cut(s) 594, 636, 940, 981
BtsI GCAGTG 2 cut(s) 877, 1138
BtsIMutI CAGTG 2 cut(s) 877, 1138
Cac8I GCNNGC 8 cut(s) 54, 64, 177, 358, 492, 615, 731, 987
CfoI GCGC 4 cut(s) 169, 372, 380, 814
Cfr10I RCCGGY 3 cut(s) 52, 352, 490
Cfr13I GGNCC 6 cut(s) 268, 288, 459, 493, 649, 1038
CpoI CGGWCCG 1 cut(s) 459
CseI GACGC 2 cut(s) 369, 416
Csp6I GTAC 4 cut(s) 664, 709, 793, 893
CspI CGGWCCG 1 cut(s) 459
CviAII CATG 2 cut(s) 172, 240
CviQI GTAC 4 cut(s) 664, 709, 793, 893
DdeI CTNAG 4 cut(s) 262, 486, 528, 656
DpnI GATC 2 cut(s) 788, 941
DpnII GATC 2 cut(s) 786, 939
DraIII CACNNNGTG 1 cut(s) 1144
Eam1104I CTCTTC 1 cut(s) 393
EarI CTCTTC 1 cut(s) 393
EciI GGCGGA 3 cut(s) 669, 707, 751
Ecl136II GAGCTC 1 cut(s) 403
Eco147I AGGCCT 1 cut(s) 260
Eco24I GRGCYC 4 cut(s) 102, 309, 332, 405
Eco32I GATATC 1 cut(s) 82
Eco47I GGWCC 3 cut(s) 268, 459, 649
Eco53kI GAGCTC 1 cut(s) 403
Eco57I CTGAAG 1 cut(s) 293
Eco72I CACGTG 1 cut(s) 992
EcoICRI GAGCTC 1 cut(s) 403
EcoO109I RGGNCCY 2 cut(s) 268, 649
EcoRII CCWGG 3 cut(s) 101, 641, 1040
EcoRV GATATC 1 cut(s) 82
EcoT38I GRGCYC 4 cut(s) 102, 309, 332, 405
FaeI CATG 2 cut(s) 175, 243
FaiI YATR 8 cut(s) 173, 241, 548, 569, 575, 773, 921, 1058
FaqI GGGAC 4 cut(s) 257, 464, 596, 662
FatI CATG 2 cut(s) 171, 239
FauI CCCGC 5 cut(s) 184, 211, 490, 639, 680
FblI GTMKAC 1 cut(s) 533
FokI GGATG 4 cut(s) 601, 643, 947, 988
FriOI GRGCYC 4 cut(s) 102, 309, 332, 405
FspBI CTAG 2 cut(s) 357, 1133
GlaI GCGC 4 cut(s) 168, 371, 379, 813
GsaI CCCAGC 2 cut(s) 319, 854
HaeII RGCGCY 1 cut(s) 815
HaeIII GGCC 4 cut(s) 260, 289, 494, 1040
HapII CCGG 6 cut(s) 53, 353, 491, 496, 668, 683
HgaI GACGC 2 cut(s) 369, 416
HhaI GCGC 4 cut(s) 169, 372, 380, 814
Hin1I GRCGYC 1 cut(s) 716
Hin1II CATG 2 cut(s) 175, 243
Hin6I GCGC 4 cut(s) 167, 370, 378, 812
HinP1I GCGC 4 cut(s) 167, 370, 378, 812
HincII GTYRAC 1 cut(s) 534
HindII GTYRAC 1 cut(s) 534
HinfI GANTC 6 cut(s) 430, 449, 503, 530, 695, 956
HpaII CCGG 6 cut(s) 53, 353, 491, 496, 668, 683
HphI GGTGA 5 cut(s) 327, 568, 772, 845, 991
Hpy166II GTNNAC 5 cut(s) 534, 709, 711, 793, 1138
Hpy188I TCNGA 1 cut(s) 304
Hpy188III TCNNGA 1 cut(s) 507
Hpy8I GTNNAC 5 cut(s) 534, 709, 711, 793, 1138
Hpy99I CGWCG 7 cut(s) 130, 410, 538, 541, 718, 721, 800
HpyAV CCTTC 4 cut(s) 394, 757, 835, 904
HpyCH4III ACNGT 2 cut(s) 91, 544
HpyCH4IV ACGT 6 cut(s) 125, 716, 740, 807, 885, 991
HpyCH4V TGCA 3 cut(s) 753, 817, 1138
HpyF10VI GCNNNNNNNGC 7 cut(s) 68, 142, 224, 400, 491, 518, 969
HpyF3I CTNAG 4 cut(s) 262, 486, 528, 656
HpySE526I ACGT 6 cut(s) 125, 716, 740, 807, 885, 991
Hsp92I GRCGYC 1 cut(s) 716
Hsp92II CATG 2 cut(s) 175, 243
HspAI GCGC 4 cut(s) 167, 370, 378, 812
KflI GGGWCCC 1 cut(s) 649
KroI GCCGGC 2 cut(s) 52, 490
KroNI GCCGGC 2 cut(s) 54, 492
Kzo9I GATC 2 cut(s) 786, 939
LguI GCTCTTC 1 cut(s) 393
LmnI GCTCC 3 cut(s) 133, 139, 946
Lsp1109I GCAGC 5 cut(s) 44, 47, 154, 157, 801
LweI GCATC 1 cut(s) 444
MaeI CTAG 2 cut(s) 357, 1133
MaeII ACGT 6 cut(s) 125, 716, 740, 807, 885, 991
MaeIII GTNAC 3 cut(s) 504, 803, 1118
MalI GATC 2 cut(s) 788, 941
MboI GATC 2 cut(s) 786, 939
MboII GAAGA 3 cut(s) 410, 481, 649
MhlI GDGCHC 7 cut(s) 102, 309, 332, 405, 783, 1112, 1140
MlyI GAGTC 5 cut(s) 424, 458, 512, 539, 965
MroNI GCCGGC 2 cut(s) 52, 490
MspA1I CMGCKG 1 cut(s) 485
MspI CCGG 6 cut(s) 53, 353, 491, 496, 668, 683
MspR9I CCNGG 6 cut(s) 103, 496, 643, 668, 684, 1042
MvaI CCWGG 3 cut(s) 103, 643, 1042
MvnI CGCG 5 cut(s) 167, 370, 380, 410, 464
MwoI GCNNNNNNNGC 7 cut(s) 68, 142, 224, 400, 491, 518, 969
NaeI GCCGGC 2 cut(s) 54, 492
NciI CCSGG 3 cut(s) 496, 668, 684
NdeII GATC 2 cut(s) 786, 939
NgoMIV GCCGGC 2 cut(s) 52, 490
NheI GCTAGC 1 cut(s) 356
NlaIII CATG 2 cut(s) 175, 243
NlaIV GGNNCC 5 cut(s) 57, 650, 651, 1039, 1109
NmuCI GTSAC 2 cut(s) 504, 803
NspI RCATGY 1 cut(s) 175
NspV TTCGAA 1 cut(s) 207
PceI AGGCCT 1 cut(s) 260
PciSI GCTCTTC 1 cut(s) 393
PcsI WCGNNNNNNNCGW 4 cut(s) 402, 425, 795, 804
PdiI GCCGGC 2 cut(s) 54, 492
PfeI GAWTC 1 cut(s) 695
PflFI GACNNNGTC 1 cut(s) 248
PleI GAGTC 5 cut(s) 424, 457, 511, 538, 964
PmaCI CACGTG 1 cut(s) 992
PmlI CACGTG 1 cut(s) 992
PpsI GAGTC 5 cut(s) 424, 457, 511, 538, 964
Ppu21I YACGTR 1 cut(s) 992
PpuMI RGGWCCY 2 cut(s) 268, 649
PshAI GACNNNNGTC 1 cut(s) 542
PsiI TTATAA 1 cut(s) 575
Psp124BI GAGCTC 1 cut(s) 405
Psp5II RGGWCCY 2 cut(s) 268, 649
Psp6I CCWGG 3 cut(s) 101, 641, 1040
PspCI CACGTG 1 cut(s) 992
PspFI CCCAGC 2 cut(s) 315, 850
PspGI CCWGG 3 cut(s) 101, 641, 1040
PspN4I GGNNCC 5 cut(s) 57, 650, 651, 1039, 1109
PspPI GGNCC 6 cut(s) 268, 288, 459, 493, 649, 1038
PspPPI RGGWCCY 2 cut(s) 268, 649
PstI CTGCAG 1 cut(s) 755
PsyI GACNNNGTC 1 cut(s) 248
RsaI GTAC 4 cut(s) 665, 710, 794, 894
RsaNI GTAC 4 cut(s) 664, 709, 793, 893
Rsr2I CGGWCCG 1 cut(s) 459
RsrII CGGWCCG 1 cut(s) 459
SacI GAGCTC 1 cut(s) 405
SalI GTCGAC 1 cut(s) 532
SapI GCTCTTC 1 cut(s) 393
Sau3AI GATC 2 cut(s) 786, 939
Sau96I GGNCC 6 cut(s) 268, 288, 459, 493, 649, 1038
SchI GAGTC 5 cut(s) 424, 458, 512, 539, 965
ScrFI CCNGG 6 cut(s) 103, 496, 643, 668, 684, 1042
SduI GDGCHC 7 cut(s) 102, 309, 332, 405, 783, 1112, 1140
SfaNI GCATC 1 cut(s) 444
SfcI CTRYAG 1 cut(s) 751
SfuI TTCGAA 1 cut(s) 207
SinI GGWCC 3 cut(s) 268, 459, 649
SpeI ACTAGT 1 cut(s) 1132
SseBI AGGCCT 1 cut(s) 260
SspMI CTAG 2 cut(s) 357, 1133
SstI GAGCTC 1 cut(s) 405
StuI AGGCCT 1 cut(s) 260
StyD4I CCNGG 6 cut(s) 101, 494, 641, 666, 682, 1040
TaaI ACNGT 2 cut(s) 91, 544
TaiI ACGT 6 cut(s) 128, 719, 743, 810, 888, 994
TatI WGTACW 1 cut(s) 708
TauI GCSGC 6 cut(s) 230, 370, 524, 527, 620, 736
TfiI GAWTC 1 cut(s) 695
TscAI CASTG 2 cut(s) 877, 1145
TseFI GTSAC 2 cut(s) 504, 803
TseI GCWGC 5 cut(s) 32, 35, 142, 145, 814
Tsp45I GTSAC 2 cut(s) 504, 803
TspDTI ATGAA 1 cut(s) 650
TspGWI ACGGA 1 cut(s) 423
TspRI CASTG 2 cut(s) 877, 1145
Tth111I GACNNNGTC 1 cut(s) 248
VneI GTGCAC 1 cut(s) 1136
VpaK11BI GGWCC 3 cut(s) 268, 459, 649
XceI RCATGY 1 cut(s) 175
XmiI GTMKAC 1 cut(s) 533
XspI CTAG 2 cut(s) 357, 1133
ZraI GACGTC 1 cut(s) 717
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.