AT1G64510

ribosomal protein s6

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014121
Physical Location & Seq
Reverse (-)
23954800 .. 23956304
1505 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G64510.1

Sequence Viewer

Length: 624 bp
ATGGCGTCTTCGCTGTGTGTATCAAATTCCACAATTTGCCCTCTGCCTAATGTATCTTCGCAGCCGCTGCTATCATTCTCCCACTCTCTCAGGCCATTCATTTCCAAGTCGAAACCTATGTGTGCCTCGATACAGAAGAGAGATGGCTCTCAATTTGTGGTGAAATCTCAGGCTCTTGACTTCTCTGGAACTTTCTTTGAAGGTGGATTCGGGTCGGATGATGACCCGACTTCTCCTTCCGGGTCGGGAGTCTCAACTGCCCTTGAAGACAAACCGGAACCTCAGTGCCCACCTGGGCTCAGGCAGTACGAAACAATGGCGGTTTTGAGACCAGACATGTCTGAAGATGAACGGCTTGGTCTTACCCAGAAATACGAAGAGTTGCTTGTGGCAGGAGGTGGAATGTATGTGGAAGTGTTTAACAGAGGAGTGATTCCGTTGGCTTACAGCATAAGAAAGAAGAACAAAGCTGGAGAAACCAACACTTACTTGGATGGAATCTACCTTCTCTTCACTTACTTCACCAAACCCGAATCAATAGTTCCACTCGAGACCGTTCTCACTGCCGACGATGACATTATCCGATCATCTTCCTTCAAGATAAAGAAGAGGAAGTACAACTGA

Protein Analysis

207

Amino Acids

22.76

Weight (kDa)

5.92

Isoelectric Point (pI)

43.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S6 PF01250 102 - 200 2.1e-16 Ribosomal protein S6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014121)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64510 AT1G64510
fragaria_vesca FvH4_5g11660
malus_domestica MD06G1111400.v1.1 MD14G1132700.v1.1
prunus_persica Prupe.5G124200_v2.0.a1
pyrus_communis pycom06g10440
rosa_chinensis RchiOBHm_Chr7g0186131
rosa_laevigata RLG00000004861
rosa_multiflora Rmu_sc0000194.1_g000031 Rmu_sc0029813.1_g000001
rosa_roxburghii Rroxscaffold_3G00268400
rosa_rugosa Rorug06G0472200
rosa_samantha Rh7AG069300 Rh7BG085300 Rh7CG078800
rosa_wichuraiana Rw7G006560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 65, 320
AcsI RAATTY 1 cut(s) 25
AcuI CTGAAG 1 cut(s) 363
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 2 cut(s) 308, 617
AflIII ACRYGT 1 cut(s) 336
AgsI TTSAA 3 cut(s) 200, 266, 598
AjnI CCWGG 1 cut(s) 292
AluBI AGCT 1 cut(s) 470
AluI AGCT 1 cut(s) 470
Alw26I GTCTC 3 cut(s) 256, 322, 545
AlwNI CAGNNNCTG 1 cut(s) 67
Ama87I CYCGRG 1 cut(s) 548
AoxI GGCC 1 cut(s) 92
ApeKI GCWGC 2 cut(s) 61, 67
ApoI RAATTY 1 cut(s) 25
AsuC2I CCSGG 1 cut(s) 241
AsuHPI GGTGA 2 cut(s) 172, 514
AvaI CYCGRG 1 cut(s) 548
BaeGI GKGCMC 1 cut(s) 290
BanII GRGCYC 1 cut(s) 300
BarI GAAGNNNNNNTAC 1 cut(s) 599
BbsI GAAGAC 1 cut(s) 273
BbvI GCAGC 2 cut(s) 54, 73
BccI CCATC 2 cut(s) 137, 488
BceAI ACGGC 1 cut(s) 368
BciT130I CCWGG 1 cut(s) 294
BcnI CCSGG 1 cut(s) 241
BcoDI GTCTC 3 cut(s) 256, 322, 545
BisI GCNGC 3 cut(s) 62, 65, 68
BlsI GCNGC 3 cut(s) 63, 66, 69
Bme1390I CCNGG 2 cut(s) 241, 294
BmeT110I CYCGRG 1 cut(s) 548
BmiI GGNNCC 1 cut(s) 279
BmrFI CCNGG 2 cut(s) 241, 294
BpiI GAAGAC 1 cut(s) 273
BpmI CTGGAG 1 cut(s) 492
Bpu10I CCTNAGC 1 cut(s) 299
BpuMI CCSGG 1 cut(s) 241
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 2 cut(s) 322, 545
BsaJI CCNNGG 1 cut(s) 293
BsaWI WCCGGW 1 cut(s) 274
BseBI CCWGG 1 cut(s) 294
BseDI CCNNGG 1 cut(s) 293
BseGI GGATG 2 cut(s) 223, 499
BseMII CTCAG 4 cut(s) 103, 182, 296, 313
BseRI GAGGAG 1 cut(s) 441
BseSI GKGCMC 1 cut(s) 290
BseXI GCAGC 2 cut(s) 54, 73
BshFI GGCC 1 cut(s) 94
BsiHKCI CYCGRG 1 cut(s) 548
BsiSI CCGG 2 cut(s) 240, 275
BsmAI GTCTC 3 cut(s) 256, 322, 545
BsnI GGCC 1 cut(s) 94
Bso31I GGTCTC 2 cut(s) 322, 545
BsoBI CYCGRG 1 cut(s) 548
Bsp1286I GDGCHC 2 cut(s) 290, 300
Bsp143I GATC 1 cut(s) 584
BspACI CCGC 2 cut(s) 65, 320
BspANI GGCC 1 cut(s) 94
BspCNI CTCAG 4 cut(s) 102, 181, 295, 312
BspLI GGNNCC 1 cut(s) 279
BspTNI GGTCTC 2 cut(s) 322, 545
BssECI CCNNGG 1 cut(s) 293
BssMI GATC 1 cut(s) 584
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 1 cut(s) 294
Bst4CI ACNGT 1 cut(s) 556
Bst6I CTCTTC 4 cut(s) 131, 372, 515, 602
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 67
BstDEI CTNAG 4 cut(s) 89, 168, 282, 299
BstF5I GGATG 2 cut(s) 223, 499
BstKTI GATC 1 cut(s) 587
BstMAI GTCTC 3 cut(s) 256, 322, 545
BstMBI GATC 1 cut(s) 584
BstMWI GCNNNNNNNGC 1 cut(s) 67
BstNI CCWGG 1 cut(s) 294
BstNSI RCATGY 1 cut(s) 340
BstSCI CCNGG 2 cut(s) 239, 292
BstSLI GKGCMC 1 cut(s) 290
BstV1I GCAGC 2 cut(s) 54, 73
BstV2I GAAGAC 1 cut(s) 273
BsuRI GGCC 1 cut(s) 94
BtsCI GGATG 2 cut(s) 223, 499
BtsI GCAGTG 1 cut(s) 561
BtsIMutI CAGTG 2 cut(s) 290, 561
CaiI CAGNNNCTG 1 cut(s) 67
Csp6I GTAC 2 cut(s) 307, 616
CviAII CATG 1 cut(s) 337
CviJI RGCY 8 cut(s) 64, 94, 147, 173, 298, 355, 443, 470
CviKI_1 RGCY 8 cut(s) 64, 94, 147, 173, 298, 355, 443, 470
CviQI GTAC 2 cut(s) 307, 616
DdeI CTNAG 4 cut(s) 89, 168, 282, 299
DpnI GATC 1 cut(s) 586
DpnII GATC 1 cut(s) 584
Eam1104I CTCTTC 4 cut(s) 131, 372, 515, 602
EarI CTCTTC 4 cut(s) 131, 372, 515, 602
Eco24I GRGCYC 1 cut(s) 300
Eco31I GGTCTC 2 cut(s) 322, 545
Eco57I CTGAAG 1 cut(s) 363
Eco88I CYCGRG 1 cut(s) 548
EcoRII CCWGG 1 cut(s) 292
EcoT38I GRGCYC 1 cut(s) 300
FaeI CATG 1 cut(s) 340
FaiI YATR 4 cut(s) 119, 338, 408, 452
FalI AAGNNNNNCTT 2 cut(s) 369, 401
FatI CATG 1 cut(s) 336
Fnu4HI GCNGC 3 cut(s) 62, 65, 68
FokI GGATG 2 cut(s) 230, 506
FriOI GRGCYC 1 cut(s) 300
Fsp4HI GCNGC 3 cut(s) 62, 65, 68
GluI GCNGC 3 cut(s) 62, 65, 68
GsuI CTGGAG 1 cut(s) 492
HaeIII GGCC 1 cut(s) 94
HapII CCGG 2 cut(s) 240, 275
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 340
HinfI GANTC 5 cut(s) 207, 249, 433, 498, 533
HpaII CCGG 2 cut(s) 240, 275
HphI GGTGA 2 cut(s) 172, 514
Hpy188I TCNGA 3 cut(s) 217, 343, 584
Hpy188III TCNNGA 5 cut(s) 176, 186, 246, 550, 598
Hpy99I CGWCG 1 cut(s) 572
HpyAV CCTTC 4 cut(s) 194, 246, 515, 604
HpyCH4III ACNGT 1 cut(s) 556
HpyF10VI GCNNNNNNNGC 1 cut(s) 67
HpyF3I CTNAG 4 cut(s) 89, 168, 282, 299
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 340
Kzo9I GATC 1 cut(s) 584
Lsp1109I GCAGC 2 cut(s) 54, 73
MalI GATC 1 cut(s) 586
MboI GATC 1 cut(s) 584
MboII GAAGA 9 cut(s) 48, 148, 278, 356, 389, 472, 502, 582, 619
MhlI GDGCHC 2 cut(s) 290, 300
MluCI AATT 3 cut(s) 25, 33, 152
MlyI GAGTC 1 cut(s) 258
MmeI TCCRAC 1 cut(s) 195
MnlI CCTC 6 cut(s) 51, 136, 291, 389, 419, 603
MseI TTAA 1 cut(s) 420
MspA1I CMGCKG 1 cut(s) 67
MspI CCGG 2 cut(s) 240, 275
MspR9I CCNGG 2 cut(s) 241, 294
MvaI CCWGG 1 cut(s) 294
MwoI GCNNNNNNNGC 1 cut(s) 67
NciI CCSGG 1 cut(s) 241
NdeII GATC 1 cut(s) 584
NlaIII CATG 1 cut(s) 340
NlaIV GGNNCC 1 cut(s) 279
NspI RCATGY 1 cut(s) 340
PaeR7I CTCGAG 1 cut(s) 548
PciI ACATGT 1 cut(s) 336
PfeI GAWTC 4 cut(s) 207, 433, 498, 533
PkrI GCNGC 3 cut(s) 63, 66, 69
PleI GAGTC 1 cut(s) 257
PpsI GAGTC 1 cut(s) 257
PscI ACATGT 1 cut(s) 336
Psp6I CCWGG 1 cut(s) 292
PspGI CCWGG 1 cut(s) 292
PspN4I GGNNCC 1 cut(s) 279
PstNI CAGNNNCTG 1 cut(s) 67
RsaI GTAC 2 cut(s) 308, 617
RsaNI GTAC 2 cut(s) 307, 616
SaqAI TTAA 1 cut(s) 420
SatI GCNGC 3 cut(s) 62, 65, 68
Sau3AI GATC 1 cut(s) 584
SchI GAGTC 1 cut(s) 258
ScrFI CCNGG 2 cut(s) 241, 294
SduI GDGCHC 2 cut(s) 290, 300
SetI ASST 7 cut(s) 118, 205, 283, 295, 400, 472, 507
Sfr274I CTCGAG 1 cut(s) 548
SlaI CTCGAG 1 cut(s) 548
SmlI CTYRAG 1 cut(s) 548
SmoI CTYRAG 1 cut(s) 548
Sse9I AATT 3 cut(s) 25, 33, 152
SsiI CCGC 2 cut(s) 65, 320
StyD4I CCNGG 2 cut(s) 239, 292
TaaI ACNGT 1 cut(s) 556
TaqI TCGA 3 cut(s) 110, 128, 549
TasI AATT 3 cut(s) 25, 33, 152
TatI WGTACW 1 cut(s) 615
TauI GCSGC 1 cut(s) 67
TfiI GAWTC 4 cut(s) 207, 433, 498, 533
Tru1I TTAA 1 cut(s) 420
Tru9I TTAA 1 cut(s) 420
TscAI CASTG 2 cut(s) 290, 568
TseI GCWGC 2 cut(s) 61, 67
TspDTI ATGAA 2 cut(s) 88, 363
TspGWI ACGGA 1 cut(s) 426
TspRI CASTG 2 cut(s) 290, 568
XapI RAATTY 1 cut(s) 25
XceI RCATGY 1 cut(s) 340
XcmI CCANNNNNNNNNTGG 1 cut(s) 487
XhoI CTCGAG 1 cut(s) 548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.