Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0014121

Physical Location & Seq

Genomic Coordinates Reverse (-)

25024616 .. 25031800

Gene Structure 7185 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1111400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGTACTAAAACACAACAAAGTACACGACACGTCGTTTCATTCACCATTGTCCTCTCCTCGAATCCCTTATCAATATCCACCAAGGACTGACCCAGAAGCTTTCTTCTTCCAAATAAAGCTTCCAGCAATGGCTTCCACTTCTTCCCTCATTTCATCTCTTACTCCTTCATCAAATTTCCCGTTTTTCCACAAAACAATTTCCCAAATCCCATCTCTACCCCAAGCCGTCTCCTTCCCTCTCTTTAACCGAACCGGACCGAATCCCAGTCCGCGCCTAACCGCCAATGTCCAGTCCCTGGAGTTCTCGGGCTCGTTTTTTGAGGGCGGGTTCCAATCGGAGGACGACCCGACTTCCCCGCCCGGGTCGGGCTTGACCGCCGTGGAGGAGAAGGAGGAGCCCCCGTGCCCACCGGGGCTCCGACAGTACGAGACCATGGCGGTGCTCAGACCCGACATGTCCGAGGATGAAAGACTTACTCTTACCCAGAAGTACGAGGAGTTGCTAATAGCCGGGGGTGGCATGTACGTGGAGGTCTTCAACAGAGGGGTAATTCCACTAGCCTATGGCATCCAGAAGAAAAACAAAGCTGGAGAGTCCAACACTTACCTGGATGGTATCTACCTCCTCTTTACCTACTTCACAAAACCTGAATCTCTTGAAGTTCTTGAAGCAAATCTGAAAGCTGATGATAATGTCATCCGATCGATGAGCTTCAAAATAAGGAAGAGGAAGTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0019843 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0070181 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S6

Protein Analysis

247

Amino Acids

27.55

Weight (kDa)

6.12

Isoelectric Point (pI)

54.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S6	PF01250	142 - 240	3.9e-18	Ribosomal protein S6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64510 AT1G64510
fragaria_vesca	FvH4_5g11660
malus_domestica	MD06G1111400.v1.1 MD14G1132700.v1.1
prunus_persica	Prupe.5G124200_v2.0.a1
pyrus_communis	pycom06g10440
rosa_chinensis	RchiOBHm_Chr7g0186131
rosa_laevigata	RLG00000004861
rosa_multiflora	Rmu_sc0000194.1_g000031 Rmu_sc0029813.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268400
rosa_rugosa	Rorug06G0472200
rosa_samantha	Rh7AG069300 Rh7BG085300 Rh7CG078800
rosa_wichuraiana	Rw7G006560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	298
AccII	CGCG	1 cut(s)	274
AciI	CCGC	6 cut(s)	272, 282, 327, 359, 378, 440
AcsI	RAATTY	1 cut(s)	175
AfaI	GTAC	6 cut(s)	6, 24, 428, 494, 527, 737
AfiI	CCNNNNNNNGG	4 cut(s)	298, 340, 363, 368
AflIII	ACRYGT	2 cut(s)	30, 456
AgsI	TTSAA	4 cut(s)	541, 662, 671, 718
AjiI	CACGTC	1 cut(s)	33
AjnI	CCWGG	2 cut(s)	297, 609
AjuI	GAANNNNNNNTTGG	2 cut(s)	105, 137
AluBI	AGCT	5 cut(s)	101, 121, 590, 686, 714
AluI	AGCT	5 cut(s)	101, 121, 590, 686, 714
Alw21I	GWGCWC	1 cut(s)	447
Alw26I	GTCTC	2 cut(s)	235, 425
AlwNI	CAGNNNCTG	1 cut(s)	298
Ama87I	CYCGRG	2 cut(s)	307, 362
ApoI	RAATTY	1 cut(s)	175
AspLEI	GCGC	1 cut(s)	276
AspS9I	GGNCC	1 cut(s)	257
AsuC2I	CCSGG	4 cut(s)	363, 364, 414, 514
AsuHPI	GGTGA	1 cut(s)	36
AvaI	CYCGRG	2 cut(s)	307, 362
AvaII	GGWCC	1 cut(s)	257
BaeGI	GKGCMC	1 cut(s)	410
BanII	GRGCYC	3 cut(s)	314, 402, 420
BarI	GAAGNNNNNNTAC	1 cut(s)	719
BbsI	GAAGAC	1 cut(s)	529
Bbv12I	GWGCWC	1 cut(s)	447
BccI	CCATC	2 cut(s)	220, 608
BceAI	ACGGC	2 cut(s)	212, 365
BciT130I	CCWGG	2 cut(s)	299, 611
BcnI	CCSGG	4 cut(s)	363, 364, 414, 514
BcoDI	GTCTC	2 cut(s)	235, 425
BfaI	CTAG	2 cut(s)	560, 739
BmcAI	AGTACT	1 cut(s)	737
Bme1390I	CCNGG	6 cut(s)	299, 363, 364, 414, 514, 611
Bme18I	GGWCC	1 cut(s)	257
BmeT110I	CYCGRG	2 cut(s)	307, 362
BmgBI	CACGTC	1 cut(s)	33
BmgT120I	GGNCC	1 cut(s)	257
BmiI	GGNNCC	3 cut(s)	332, 399, 419
BmrFI	CCNGG	6 cut(s)	299, 363, 364, 414, 514, 611
BmrI	ACTGGG	1 cut(s)	261
BmsI	GCATC	1 cut(s)	579
BmuI	ACTGGG	1 cut(s)	261
BpiI	GAAGAC	1 cut(s)	529
BpmI	CTGGAG	2 cut(s)	320, 612
BpuMI	CCSGG	4 cut(s)	363, 364, 414, 514
Bsa29I	ATCGAT	1 cut(s)	707
BsaAI	YACGTR	1 cut(s)	529
BsaI	GGTCTC	1 cut(s)	425
BsaJI	CCNNGG	8 cut(s)	83, 297, 362, 381, 413, 435, 462, 513
BsaWI	WCCGGW	1 cut(s)	254
BsaXI	ACNNNNNCTCC	4 cut(s)	389, 402, 419, 432
Bsc4I	CCNNNNNNNGG	4 cut(s)	298, 340, 363, 368
Bse1I	ACTGG	2 cut(s)	267, 292
Bse3DI	GCAATG	1 cut(s)	135
BseBI	CCWGG	2 cut(s)	299, 611
BseCI	ATCGAT	1 cut(s)	707
BseDI	CCNNGG	8 cut(s)	83, 297, 362, 381, 413, 435, 462, 513
BseGI	GGATG	4 cut(s)	472, 570, 619, 699
BseLI	CCNNNNNNNGG	4 cut(s)	298, 340, 363, 368
BseMI	GCAATG	1 cut(s)	135
BseMII	CTCAG	1 cut(s)	460
BseNI	ACTGG	2 cut(s)	267, 292
BseRI	GAGGAG	5 cut(s)	48, 401, 410, 512, 617
BseSI	GKGCMC	1 cut(s)	410
Bsh1236I	CGCG	1 cut(s)	274
Bsh1285I	CGRYCG	1 cut(s)	707
BshVI	ATCGAT	1 cut(s)	707
BsiEI	CGRYCG	1 cut(s)	707
BsiHKAI	GWGCWC	1 cut(s)	447
BsiHKCI	CYCGRG	2 cut(s)	307, 362
BsiSI	CCGG	4 cut(s)	255, 363, 413, 513
BslFI	GGGAC	1 cut(s)	280
BslI	CCNNNNNNNGG	4 cut(s)	298, 340, 363, 368
BsmAI	GTCTC	2 cut(s)	235, 425
BsmBI	CGTCTC	1 cut(s)	235
BsmFI	GGGAC	1 cut(s)	280
Bso31I	GGTCTC	1 cut(s)	425
BsoBI	CYCGRG	2 cut(s)	307, 362
Bsp1286I	GDGCHC	5 cut(s)	314, 402, 410, 420, 447
Bsp143I	GATC	1 cut(s)	704
Bsp19I	CCATGG	1 cut(s)	435
BspACI	CCGC	6 cut(s)	272, 282, 327, 359, 378, 440
BspCNI	CTCAG	1 cut(s)	459
BspDI	ATCGAT	1 cut(s)	707
BspFNI	CGCG	1 cut(s)	274
BspLI	GGNNCC	3 cut(s)	332, 399, 419
BspTNI	GGTCTC	1 cut(s)	425
BsrDI	GCAATG	1 cut(s)	135
BsrI	ACTGG	2 cut(s)	267, 292
BssECI	CCNNGG	8 cut(s)	83, 297, 362, 381, 413, 435, 462, 513
BssMI	GATC	1 cut(s)	704
BssT1I	CCWWGG	2 cut(s)	83, 435
Bst2UI	CCWGG	2 cut(s)	299, 611
Bst4CI	ACNGT	1 cut(s)	426
Bst6I	CTCTTC	1 cut(s)	722
BstBAI	YACGTR	1 cut(s)	529
BstDEI	CTNAG	1 cut(s)	446
BstDSI	CCRYGG	2 cut(s)	381, 435
BstF5I	GGATG	4 cut(s)	472, 570, 619, 699
BstFNI	CGCG	1 cut(s)	274
BstHHI	GCGC	1 cut(s)	276
BstKTI	GATC	1 cut(s)	707
BstMAI	GTCTC	2 cut(s)	235, 425
BstMBI	GATC	1 cut(s)	704
BstMCI	CGRYCG	1 cut(s)	707
BstNI	CCWGG	2 cut(s)	299, 611
BstNSI	RCATGY	2 cut(s)	460, 526
BstSCI	CCNGG	6 cut(s)	297, 361, 362, 412, 512, 609
BstSLI	GKGCMC	1 cut(s)	410
BstUI	CGCG	1 cut(s)	274
BstV2I	GAAGAC	1 cut(s)	529
Bsu15I	ATCGAT	1 cut(s)	707
BsuTUI	ATCGAT	1 cut(s)	707
BtgI	CCRYGG	2 cut(s)	381, 435
BtrI	CACGTC	1 cut(s)	33
BtsCI	GGATG	4 cut(s)	472, 570, 619, 699
CaiI	CAGNNNCTG	1 cut(s)	298
CfoI	GCGC	1 cut(s)	276
Cfr13I	GGNCC	1 cut(s)	257
Cfr9I	CCCGGG	1 cut(s)	362
ClaI	ATCGAT	1 cut(s)	707
CpoI	CGGWCCG	1 cut(s)	257
Csp6I	GTAC	6 cut(s)	5, 23, 427, 493, 526, 736
CspI	CGGWCCG	1 cut(s)	257
CviAII	CATG	3 cut(s)	436, 457, 523
CviQI	GTAC	6 cut(s)	5, 23, 427, 493, 526, 736
DdeI	CTNAG	1 cut(s)	446
DpnI	GATC	1 cut(s)	706
DpnII	GATC	1 cut(s)	704
Eam1104I	CTCTTC	1 cut(s)	722
EarI	CTCTTC	1 cut(s)	722
Eco130I	CCWWGG	2 cut(s)	83, 435
Eco24I	GRGCYC	3 cut(s)	314, 402, 420
Eco31I	GGTCTC	1 cut(s)	425
Eco47I	GGWCC	1 cut(s)	257
Eco88I	CYCGRG	2 cut(s)	307, 362
EcoRII	CCWGG	2 cut(s)	297, 609
EcoT14I	CCWWGG	2 cut(s)	83, 435
EcoT38I	GRGCYC	3 cut(s)	314, 402, 420
ErhI	CCWWGG	2 cut(s)	83, 435
Esp3I	CGTCTC	1 cut(s)	235
FaeI	CATG	3 cut(s)	439, 460, 526
FaiI	YATR	4 cut(s)	437, 458, 524, 567
FaqI	GGGAC	1 cut(s)	280
FatI	CATG	3 cut(s)	435, 456, 522
FauI	CCCGC	2 cut(s)	320, 366
FokI	GGATG	4 cut(s)	479, 557, 626, 686
FriOI	GRGCYC	3 cut(s)	314, 402, 420
FspBI	CTAG	2 cut(s)	560, 739
GlaI	GCGC	1 cut(s)	275
GsuI	CTGGAG	2 cut(s)	320, 612
HapII	CCGG	4 cut(s)	255, 363, 413, 513
HhaI	GCGC	1 cut(s)	276
Hin1II	CATG	3 cut(s)	439, 460, 526
Hin6I	GCGC	1 cut(s)	274
HinP1I	GCGC	1 cut(s)	274
HindIII	AAGCTT	2 cut(s)	99, 119
HinfI	GANTC	4 cut(s)	63, 262, 596, 653
HpaII	CCGG	4 cut(s)	255, 363, 413, 513
HphI	GGTGA	1 cut(s)	36
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	6 cut(s)	340, 422, 449, 463, 681, 704
Hpy188III	TCNNGA	3 cut(s)	574, 659, 668
Hpy8I	GTNNAC	1 cut(s)	25
Hpy99I	CGWCG	1 cut(s)	37
HpyAV	CCTTC	3 cut(s)	177, 244, 385
HpyCH4III	ACNGT	1 cut(s)	426
HpyCH4IV	ACGT	2 cut(s)	32, 528
HpyF3I	CTNAG	1 cut(s)	446
HpySE526I	ACGT	2 cut(s)	32, 528
Hsp92II	CATG	3 cut(s)	439, 460, 526
HspAI	GCGC	1 cut(s)	274
Kzo9I	GATC	1 cut(s)	704
LmnI	GCTCC	2 cut(s)	397, 423
LweI	GCATC	1 cut(s)	579
MaeI	CTAG	2 cut(s)	560, 739
MaeII	ACGT	2 cut(s)	32, 528
MalI	GATC	1 cut(s)	706
MboI	GATC	1 cut(s)	704
MboII	GAAGA	6 cut(s)	97, 100, 135, 529, 589, 739
MhlI	GDGCHC	5 cut(s)	314, 402, 410, 420, 447
MluCI	AATT	3 cut(s)	175, 198, 552
MlyI	GAGTC	1 cut(s)	605
MmeI	TCCRAC	2 cut(s)	445, 624
MseI	TTAA	1 cut(s)	246
MslI	CAYNNNNRTG	2 cut(s)	440, 527
MspI	CCGG	4 cut(s)	255, 363, 413, 513
MspR9I	CCNGG	6 cut(s)	299, 363, 364, 414, 514, 611
MvaI	CCWGG	2 cut(s)	299, 611
MvnI	CGCG	1 cut(s)	274
NciI	CCSGG	4 cut(s)	363, 364, 414, 514
NcoI	CCATGG	1 cut(s)	435
NdeII	GATC	1 cut(s)	704
NlaIII	CATG	3 cut(s)	439, 460, 526
NlaIV	GGNNCC	3 cut(s)	332, 399, 419
NspI	RCATGY	2 cut(s)	460, 526
PciI	ACATGT	1 cut(s)	456
PfeI	GAWTC	3 cut(s)	63, 262, 653
PflMI	CCANNNNNTGG	1 cut(s)	298
Ple19I	CGATCG	1 cut(s)	707
PleI	GAGTC	1 cut(s)	604
PpsI	GAGTC	1 cut(s)	604
Ppu21I	YACGTR	1 cut(s)	529
PscI	ACATGT	1 cut(s)	456
Psp6I	CCWGG	2 cut(s)	297, 609
PspGI	CCWGG	2 cut(s)	297, 609
PspN4I	GGNNCC	3 cut(s)	332, 399, 419
PspPI	GGNCC	1 cut(s)	257
PstNI	CAGNNNCTG	1 cut(s)	298
PvuI	CGATCG	1 cut(s)	707
RsaI	GTAC	6 cut(s)	6, 24, 428, 494, 527, 737
RsaNI	GTAC	6 cut(s)	5, 23, 427, 493, 526, 736
RseI	CAYNNNNRTG	2 cut(s)	440, 527
Rsr2I	CGGWCCG	1 cut(s)	257
RsrII	CGGWCCG	1 cut(s)	257
SaqAI	TTAA	1 cut(s)	246
Sau3AI	GATC	1 cut(s)	704
Sau96I	GGNCC	1 cut(s)	257
ScaI	AGTACT	1 cut(s)	737
SchI	GAGTC	1 cut(s)	605
ScrFI	CCNGG	6 cut(s)	299, 363, 364, 414, 514, 611
SduI	GDGCHC	5 cut(s)	314, 402, 410, 420, 447
SfaNI	GCATC	1 cut(s)	579
SinI	GGWCC	1 cut(s)	257
SmaI	CCCGGG	1 cut(s)	364
SmiMI	CAYNNNNRTG	2 cut(s)	440, 527
Sse9I	AATT	3 cut(s)	175, 198, 552
SsiI	CCGC	6 cut(s)	272, 282, 327, 359, 378, 440
SspMI	CTAG	2 cut(s)	560, 739
StyD4I	CCNGG	6 cut(s)	297, 361, 362, 412, 512, 609
StyI	CCWWGG	2 cut(s)	83, 435
TaaI	ACNGT	1 cut(s)	426
TaiI	ACGT	2 cut(s)	35, 531
TaqI	TCGA	2 cut(s)	61, 707
TaqII	GACCGA	1 cut(s)	274
TasI	AATT	3 cut(s)	175, 198, 552
TatI	WGTACW	2 cut(s)	22, 735
TfiI	GAWTC	3 cut(s)	63, 262, 653
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TspDTI	ATGAA	4 cut(s)	29, 144, 159, 483
TspMI	CCCGGG	1 cut(s)	362
Van91I	CCANNNNNTGG	1 cut(s)	298
VpaK11BI	GGWCC	1 cut(s)	257
XapI	RAATTY	1 cut(s)	175
XceI	RCATGY	2 cut(s)	460, 526
XcmI	CCANNNNNNNNNTGG	1 cut(s)	607
XmaI	CCCGGG	1 cut(s)	362
XspI	CTAG	2 cut(s)	560, 739
ZrmI	AGTACT	1 cut(s)	737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.