Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0014121

Physical Location & Seq

Genomic Coordinates Forward (+)

61464976 .. 61466992

Gene Structure 2017 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00268400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGCAGCTTCAACTTACTCCCTCATTTCCACCACTTCGAATTTCCTGTTTTGCCCCAAAACTCTCTCCCAAATCCCATCCCTACCCCATTCCCTCTCCTTCCCTCCCACAACCGCAAAGCCTCTCGTTCACCGGACCCGACCCGGCCCCAGTTCGGGCCTGACCGTCAATGTCCAGTCGCTGGAGTTCTCCGGCTCGTTCTTCGAGGGCGGCGGGTTCCAGTCGGAGGACGACCCGAATTCTCCGTCCGGGCCGGGCCTAACCGCAGCGGAGGACAAGGAGGACCCGCCGTGCCCGCCGGGGCTCCGGCAGTACGAGACCATGGCGGTTCTCAGACCCGATATGTCTGAGGATGAAAGACTGGCTCTTACCCAGAAGTATGAGGAGTTGCTTATAGCTGGAGGTGGCATGTATGTGGAGGTCTTCAATAGAGGAGTGATTCCACTAGCCTATAGCATCCAGAAGAAAAACAAAGCTGGAGAATCCAACACTTACCTGGATGGCATCTACCTACTCTTTACCTACTTCACAAAACCTGAGTCTCTCGAGTTTCTTGAACAGAATTTGAAAGCTGATGACAATGTCATCCGATCTATGAGTTTCAAAATAAGGAAGAGGAAGTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0019843 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0070181 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S6

Protein Analysis

208

Amino Acids

23.02

Weight (kDa)

5.5

Isoelectric Point (pI)

48.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S6	PF01250	104 - 202	9.3e-19	Ribosomal protein S6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64510 AT1G64510
fragaria_vesca	FvH4_5g11660
malus_domestica	MD06G1111400.v1.1 MD14G1132700.v1.1
prunus_persica	Prupe.5G124200_v2.0.a1
pyrus_communis	pycom06g10440
rosa_chinensis	RchiOBHm_Chr7g0186131
rosa_laevigata	RLG00000004861
rosa_multiflora	Rmu_sc0000194.1_g000031 Rmu_sc0029813.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268400
rosa_rugosa	Rorug06G0472200
rosa_samantha	Rh7AG069300 Rh7BG085300 Rh7CG078800
rosa_wichuraiana	Rw7G006560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	181
AciI	CCGC	8 cut(s)	114, 210, 213, 264, 269, 287, 296, 326
AcsI	RAATTY	3 cut(s)	40, 238, 562
AfaI	GTAC	2 cut(s)	314, 623
AfiI	CCNNNNNNNGG	4 cut(s)	154, 155, 181, 226
AgsI	TTSAA	5 cut(s)	12, 427, 557, 568, 604
AjnI	CCWGG	1 cut(s)	495
AluBI	AGCT	4 cut(s)	8, 398, 476, 572
AluI	AGCT	4 cut(s)	8, 398, 476, 572
Alw26I	GTCTC	2 cut(s)	311, 546
AlwNI	CAGNNNCTG	1 cut(s)	181
Ama87I	CYCGRG	1 cut(s)	545
AoxI	GGCC	4 cut(s)	145, 157, 251, 256
ApeKI	GCWGC	2 cut(s)	5, 266
ApoI	RAATTY	3 cut(s)	40, 238, 562
ArsI	GACNNNNNNTTYG	4 cut(s)	230, 262, 524, 556
AspS9I	GGNCC	6 cut(s)	135, 146, 157, 251, 256, 283
AsuC2I	CCSGG	4 cut(s)	144, 250, 255, 300
AsuHPI	GGTGA	1 cut(s)	122
AsuII	TTCGAA	1 cut(s)	38
AvaI	CYCGRG	1 cut(s)	545
AvaII	GGWCC	2 cut(s)	135, 283
BaeGI	GKGCMC	1 cut(s)	296
BanII	GRGCYC	1 cut(s)	306
BarI	GAAGNNNNNNTAC	1 cut(s)	605
BbsI	GAAGAC	1 cut(s)	415
BbvI	GCAGC	2 cut(s)	17, 278
BccI	CCATC	2 cut(s)	85, 494
BceAI	ACGGC	1 cut(s)	274
BciT130I	CCWGG	1 cut(s)	497
BcnI	CCSGG	4 cut(s)	144, 250, 255, 300
BcoDI	GTCTC	2 cut(s)	311, 546
BfaI	CTAG	2 cut(s)	446, 625
BfmI	CTRYAG	1 cut(s)	451
BisI	GCNGC	3 cut(s)	6, 211, 267
BlsI	GCNGC	3 cut(s)	7, 212, 268
BmcAI	AGTACT	1 cut(s)	623
Bme1390I	CCNGG	5 cut(s)	144, 250, 255, 300, 497
Bme18I	GGWCC	2 cut(s)	135, 283
BmeT110I	CYCGRG	1 cut(s)	545
BmgT120I	GGNCC	6 cut(s)	135, 146, 157, 251, 256, 283
BmiI	GGNNCC	5 cut(s)	137, 148, 218, 285, 305
BmrFI	CCNGG	5 cut(s)	144, 250, 255, 300, 497
BmrI	ACTGGG	1 cut(s)	144
BmsI	GCATC	2 cut(s)	465, 513
BmuI	ACTGGG	1 cut(s)	144
BpiI	GAAGAC	1 cut(s)	415
BpmI	CTGGAG	3 cut(s)	203, 420, 498
Bpu14I	TTCGAA	1 cut(s)	38
BpuMI	CCSGG	4 cut(s)	144, 250, 255, 300
BsaI	GGTCTC	1 cut(s)	311
BsaJI	CCNNGG	2 cut(s)	299, 321
BsaWI	WCCGGW	1 cut(s)	132
Bsc4I	CCNNNNNNNGG	4 cut(s)	154, 155, 181, 226
Bse1I	ACTGG	4 cut(s)	150, 175, 220, 366
BseBI	CCWGG	1 cut(s)	497
BseDI	CCNNGG	2 cut(s)	299, 321
BseGI	GGATG	5 cut(s)	77, 358, 456, 505, 585
BseLI	CCNNNNNNNGG	4 cut(s)	154, 155, 181, 226
BseMII	CTCAG	3 cut(s)	339, 346, 528
BseNI	ACTGG	4 cut(s)	150, 175, 220, 366
BseRI	GAGGAG	2 cut(s)	398, 447
BseSI	GKGCMC	1 cut(s)	296
BseXI	GCAGC	2 cut(s)	17, 278
BshFI	GGCC	4 cut(s)	147, 159, 253, 258
BsiHKCI	CYCGRG	1 cut(s)	545
BsiSI	CCGG	7 cut(s)	133, 144, 192, 249, 254, 299, 307
BslI	CCNNNNNNNGG	4 cut(s)	154, 155, 181, 226
BsmAI	GTCTC	2 cut(s)	311, 546
BsnI	GGCC	4 cut(s)	147, 159, 253, 258
Bso31I	GGTCTC	1 cut(s)	311
BsoBI	CYCGRG	1 cut(s)	545
Bsp119I	TTCGAA	1 cut(s)	38
Bsp1286I	GDGCHC	2 cut(s)	296, 306
Bsp143I	GATC	1 cut(s)	590
Bsp19I	CCATGG	1 cut(s)	321
BspACI	CCGC	8 cut(s)	114, 210, 213, 264, 269, 287, 296, 326
BspANI	GGCC	4 cut(s)	147, 159, 253, 258
BspCNI	CTCAG	3 cut(s)	340, 345, 529
BspLI	GGNNCC	5 cut(s)	137, 148, 218, 285, 305
BspT104I	TTCGAA	1 cut(s)	38
BspTNI	GGTCTC	1 cut(s)	311
BsrI	ACTGG	4 cut(s)	150, 175, 220, 366
BssECI	CCNNGG	2 cut(s)	299, 321
BssMI	GATC	1 cut(s)	590
BssT1I	CCWWGG	1 cut(s)	321
Bst2UI	CCWGG	1 cut(s)	497
Bst4CI	ACNGT	1 cut(s)	166
Bst6I	CTCTTC	1 cut(s)	608
BstBI	TTCGAA	1 cut(s)	38
BstC8I	GCNNGC	1 cut(s)	296
BstDEI	CTNAG	3 cut(s)	332, 348, 537
BstDSI	CCRYGG	1 cut(s)	321
BstF5I	GGATG	5 cut(s)	77, 358, 456, 505, 585
BstKTI	GATC	1 cut(s)	593
BstMAI	GTCTC	2 cut(s)	311, 546
BstMBI	GATC	1 cut(s)	590
BstMWI	GCNNNNNNNGC	1 cut(s)	295
BstNI	CCWGG	1 cut(s)	497
BstNSI	RCATGY	1 cut(s)	412
BstSCI	CCNGG	5 cut(s)	142, 248, 253, 298, 495
BstSFI	CTRYAG	1 cut(s)	451
BstSLI	GKGCMC	1 cut(s)	296
BstV1I	GCAGC	2 cut(s)	17, 278
BstV2I	GAAGAC	1 cut(s)	415
BsuRI	GGCC	4 cut(s)	147, 159, 253, 258
BtgI	CCRYGG	1 cut(s)	321
BtsCI	GGATG	5 cut(s)	77, 358, 456, 505, 585
Cac8I	GCNNGC	1 cut(s)	296
CaiI	CAGNNNCTG	1 cut(s)	181
Cfr13I	GGNCC	6 cut(s)	135, 146, 157, 251, 256, 283
Csp6I	GTAC	2 cut(s)	313, 622
CviAII	CATG	2 cut(s)	322, 409
CviQI	GTAC	2 cut(s)	313, 622
DdeI	CTNAG	3 cut(s)	332, 348, 537
DpnI	GATC	1 cut(s)	592
DpnII	GATC	1 cut(s)	590
Eam1104I	CTCTTC	1 cut(s)	608
EarI	CTCTTC	1 cut(s)	608
Eco130I	CCWWGG	1 cut(s)	321
Eco24I	GRGCYC	1 cut(s)	306
Eco31I	GGTCTC	1 cut(s)	311
Eco47I	GGWCC	2 cut(s)	135, 283
Eco88I	CYCGRG	1 cut(s)	545
EcoO109I	RGGNCCY	1 cut(s)	283
EcoRI	GAATTC	1 cut(s)	238
EcoRII	CCWGG	1 cut(s)	495
EcoT14I	CCWWGG	1 cut(s)	321
EcoT38I	GRGCYC	1 cut(s)	306
ErhI	CCWWGG	1 cut(s)	321
FaeI	CATG	2 cut(s)	325, 412
FaiI	YATR	8 cut(s)	323, 344, 381, 395, 410, 414, 453, 596
FatI	CATG	2 cut(s)	321, 408
FauI	CCCGC	3 cut(s)	206, 294, 303
Fnu4HI	GCNGC	3 cut(s)	6, 211, 267
FokI	GGATG	5 cut(s)	64, 365, 443, 512, 572
FriOI	GRGCYC	1 cut(s)	306
Fsp4HI	GCNGC	3 cut(s)	6, 211, 267
FspBI	CTAG	2 cut(s)	446, 625
GluI	GCNGC	3 cut(s)	6, 211, 267
GsuI	CTGGAG	3 cut(s)	203, 420, 498
HaeIII	GGCC	4 cut(s)	147, 159, 253, 258
HapII	CCGG	7 cut(s)	133, 144, 192, 249, 254, 299, 307
Hin1II	CATG	2 cut(s)	325, 412
HinfI	GANTC	3 cut(s)	439, 482, 539
HpaII	CCGG	7 cut(s)	133, 144, 192, 249, 254, 299, 307
HphI	GGTGA	1 cut(s)	122
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	4 cut(s)	226, 335, 349, 590
Hpy188III	TCNNGA	3 cut(s)	460, 545, 554
Hpy8I	GTNNAC	1 cut(s)	130
HpyAV	CCTTC	1 cut(s)	109
HpyCH4III	ACNGT	1 cut(s)	166
HpyF10VI	GCNNNNNNNGC	1 cut(s)	295
HpyF3I	CTNAG	3 cut(s)	332, 348, 537
Hsp92II	CATG	2 cut(s)	325, 412
Kzo9I	GATC	1 cut(s)	590
LmnI	GCTCC	1 cut(s)	309
Lsp1109I	GCAGC	2 cut(s)	17, 278
LweI	GCATC	2 cut(s)	465, 513
MaeI	CTAG	2 cut(s)	446, 625
MalI	GATC	1 cut(s)	592
MboI	GATC	1 cut(s)	590
MboII	GAAGA	4 cut(s)	193, 415, 475, 625
MhlI	GDGCHC	2 cut(s)	296, 306
MluCI	AATT	3 cut(s)	40, 238, 562
MlyI	GAGTC	1 cut(s)	548
MmeI	TCCRAC	2 cut(s)	204, 510
MslI	CAYNNNNRTG	1 cut(s)	413
MspA1I	CMGCKG	1 cut(s)	269
MspI	CCGG	7 cut(s)	133, 144, 192, 249, 254, 299, 307
MspR9I	CCNGG	5 cut(s)	144, 250, 255, 300, 497
MvaI	CCWGG	1 cut(s)	497
MwoI	GCNNNNNNNGC	1 cut(s)	295
NciI	CCSGG	4 cut(s)	144, 250, 255, 300
NcoI	CCATGG	1 cut(s)	321
NdeII	GATC	1 cut(s)	590
NlaIII	CATG	2 cut(s)	325, 412
NlaIV	GGNNCC	5 cut(s)	137, 148, 218, 285, 305
NspI	RCATGY	1 cut(s)	412
NspV	TTCGAA	1 cut(s)	38
PaeR7I	CTCGAG	1 cut(s)	545
PfeI	GAWTC	2 cut(s)	439, 482
PflFI	GACNNNGTC	1 cut(s)	581
PflMI	CCANNNNNTGG	1 cut(s)	181
PkrI	GCNGC	3 cut(s)	7, 212, 268
PleI	GAGTC	1 cut(s)	547
PpsI	GAGTC	1 cut(s)	547
PpuMI	RGGWCCY	1 cut(s)	283
Psp5II	RGGWCCY	1 cut(s)	283
Psp6I	CCWGG	1 cut(s)	495
PspGI	CCWGG	1 cut(s)	495
PspN4I	GGNNCC	5 cut(s)	137, 148, 218, 285, 305
PspPI	GGNCC	6 cut(s)	135, 146, 157, 251, 256, 283
PspPPI	RGGWCCY	1 cut(s)	283
PstNI	CAGNNNCTG	1 cut(s)	181
PsyI	GACNNNGTC	1 cut(s)	581
RsaI	GTAC	2 cut(s)	314, 623
RsaNI	GTAC	2 cut(s)	313, 622
RseI	CAYNNNNRTG	1 cut(s)	413
SatI	GCNGC	3 cut(s)	6, 211, 267
Sau3AI	GATC	1 cut(s)	590
Sau96I	GGNCC	6 cut(s)	135, 146, 157, 251, 256, 283
ScaI	AGTACT	1 cut(s)	623
SchI	GAGTC	1 cut(s)	548
ScrFI	CCNGG	5 cut(s)	144, 250, 255, 300, 497
SduI	GDGCHC	2 cut(s)	296, 306
SfaNI	GCATC	2 cut(s)	465, 513
SfcI	CTRYAG	1 cut(s)	451
Sfr274I	CTCGAG	1 cut(s)	545
SfuI	TTCGAA	1 cut(s)	38
SinI	GGWCC	2 cut(s)	135, 283
SlaI	CTCGAG	1 cut(s)	545
SmiMI	CAYNNNNRTG	1 cut(s)	413
SmlI	CTYRAG	1 cut(s)	545
SmoI	CTYRAG	1 cut(s)	545
Sse9I	AATT	3 cut(s)	40, 238, 562
SsiI	CCGC	8 cut(s)	114, 210, 213, 264, 269, 287, 296, 326
SspMI	CTAG	2 cut(s)	446, 625
StyD4I	CCNGG	5 cut(s)	142, 248, 253, 298, 495
StyI	CCWWGG	1 cut(s)	321
TaaI	ACNGT	1 cut(s)	166
TaqI	TCGA	3 cut(s)	38, 204, 546
TasI	AATT	3 cut(s)	40, 238, 562
TatI	WGTACW	1 cut(s)	621
TauI	GCSGC	1 cut(s)	213
TfiI	GAWTC	2 cut(s)	439, 482
TseI	GCWGC	2 cut(s)	5, 266
TspDTI	ATGAA	1 cut(s)	369
TspGWI	ACGGA	1 cut(s)	234
Tth111I	GACNNNGTC	1 cut(s)	581
Van91I	CCANNNNNTGG	1 cut(s)	181
VpaK11BI	GGWCC	2 cut(s)	135, 283
XapI	RAATTY	3 cut(s)	40, 238, 562
XceI	RCATGY	1 cut(s)	412
XcmI	CCANNNNNNNNNTGG	1 cut(s)	493
XhoI	CTCGAG	1 cut(s)	545
XspI	CTAG	2 cut(s)	446, 625
ZrmI	AGTACT	1 cut(s)	623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.