Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0014121

Physical Location & Seq

Genomic Coordinates Reverse (-)

12251495 .. 12254035

Gene Structure 2541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G124200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGCTTCCACTTCTTCACTCATTTCAACTACTCCTTCGAATTTCCAGTTTTGCCCCAAAGCAATTTCCCAAATTGCATCTCTGCCCCAGACCATCTCCTTCACTCATTTCAACCGAACCAGACCGGGTCTCCGTTCGGGCCTGACCGCCAAAGTCCAGTCACTGGAGTTCTCGGGCTCGTTTTTCGAGGGAGGGTTCCAGTCAGAGGATGATCCGCCTTCACCACCCGGGTCGGGTTTAACCGCAGTGGAGGAGAAGGAGGAGCCACCGTGCCCACCGGGGCTCCGACAGTACGAGACCATGGCGGTTCTCAGGCCAGACATGTCGGAGGATGAAAGACTTACTCTTACCCAAAAGTACGAGGAGTTGCTTATAGCCGGGGGCGGCATGTATGTGGAGGTCTTCAACAGAGGGGTCATTCCACTAGCCTATGGCATCCAGAAGAAAAACAAAGCTGGGGAGTCTAACACTTACTTGGATGGTATCTACCTACTCTTTACCTACTTCACAAAACCTGAGTCTCTCGAAGTTCTTGAAGCGAATCTGAAAGCTGATGATAATGTCATCCGATCAATGAGCTTCAAAATTAGGAAGAGGAAGTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0019843 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0070181 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S6

Protein Analysis

202

Amino Acids

22.34

Weight (kDa)

5.6

Isoelectric Point (pI)

52.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64510 AT1G64510
fragaria_vesca	FvH4_5g11660
malus_domestica	MD06G1111400.v1.1 MD14G1132700.v1.1
prunus_persica	Prupe.5G124200_v2.0.a1
pyrus_communis	pycom06g10440
rosa_chinensis	RchiOBHm_Chr7g0186131
rosa_laevigata	RLG00000004861
rosa_multiflora	Rmu_sc0000194.1_g000031 Rmu_sc0029813.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268400
rosa_rugosa	Rorug06G0472200
rosa_samantha	Rh7AG069300 Rh7BG085300 Rh7CG078800
rosa_wichuraiana	Rw7G006560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	163
AciI	CCGC	5 cut(s)	147, 215, 243, 305, 384
AclWI	GGATC	1 cut(s)	206
AcsI	RAATTY	1 cut(s)	40
AfaI	GTAC	3 cut(s)	293, 359, 602
AfiI	CCNNNNNNNGG	3 cut(s)	163, 205, 233
AflIII	ACRYGT	1 cut(s)	321
AgsI	TTSAA	5 cut(s)	27, 112, 406, 536, 583
AluBI	AGCT	3 cut(s)	455, 551, 579
AluI	AGCT	3 cut(s)	455, 551, 579
Alw26I	GTCTC	3 cut(s)	134, 290, 525
AlwI	GGATC	1 cut(s)	206
AlwNI	CAGNNNCTG	1 cut(s)	163
Ama87I	CYCGRG	2 cut(s)	172, 227
AoxI	GGCC	2 cut(s)	139, 314
ApoI	RAATTY	1 cut(s)	40
ArsI	GACNNNNNNTTYG	2 cut(s)	503, 535
AspS9I	GGNCC	1 cut(s)	139
AsuC2I	CCSGG	5 cut(s)	126, 228, 229, 279, 379
AsuHPI	GGTGA	1 cut(s)	213
AsuII	TTCGAA	1 cut(s)	38
AvaI	CYCGRG	2 cut(s)	172, 227
BaeGI	GKGCMC	1 cut(s)	275
BanII	GRGCYC	2 cut(s)	179, 285
BarI	GAAGNNNNNNTAC	1 cut(s)	584
BbsI	GAAGAC	1 cut(s)	394
BccI	CCATC	2 cut(s)	101, 473
BcnI	CCSGG	5 cut(s)	126, 228, 229, 279, 379
BcoDI	GTCTC	3 cut(s)	134, 290, 525
BfaI	CTAG	2 cut(s)	425, 604
BisI	GCNGC	1 cut(s)	385
BlsI	GCNGC	1 cut(s)	386
BmcAI	AGTACT	1 cut(s)	602
Bme1390I	CCNGG	5 cut(s)	126, 228, 229, 279, 379
BmeT110I	CYCGRG	2 cut(s)	172, 227
BmgT120I	GGNCC	1 cut(s)	139
BmiI	GGNNCC	3 cut(s)	197, 264, 284
BmrFI	CCNGG	5 cut(s)	126, 228, 229, 279, 379
BmsI	GCATC	2 cut(s)	86, 444
BpiI	GAAGAC	1 cut(s)	394
BpmI	CTGGAG	1 cut(s)	185
Bpu14I	TTCGAA	1 cut(s)	38
BpuMI	CCSGG	5 cut(s)	126, 228, 229, 279, 379
BsaI	GGTCTC	2 cut(s)	134, 290
BsaJI	CCNNGG	4 cut(s)	227, 278, 300, 378
BsaXI	ACNNNNNCTCC	6 cut(s)	114, 144, 254, 267, 284, 297
Bsc4I	CCNNNNNNNGG	3 cut(s)	163, 205, 233
Bse1I	ACTGG	4 cut(s)	46, 157, 168, 199
BseDI	CCNNGG	4 cut(s)	227, 278, 300, 378
BseGI	GGATG	5 cut(s)	214, 337, 435, 484, 564
BseLI	CCNNNNNNNGG	3 cut(s)	163, 205, 233
BseMII	CTCAG	2 cut(s)	325, 507
BseNI	ACTGG	4 cut(s)	46, 157, 168, 199
BseRI	GAGGAG	3 cut(s)	266, 275, 377
BseSI	GKGCMC	1 cut(s)	275
BseYI	CCCAGC	1 cut(s)	455
BshFI	GGCC	2 cut(s)	141, 316
BsiHKCI	CYCGRG	2 cut(s)	172, 227
BsiSI	CCGG	4 cut(s)	125, 228, 278, 378
BslI	CCNNNNNNNGG	3 cut(s)	163, 205, 233
BsmAI	GTCTC	3 cut(s)	134, 290, 525
BsnI	GGCC	2 cut(s)	141, 316
Bso31I	GGTCTC	2 cut(s)	134, 290
BsoBI	CYCGRG	2 cut(s)	172, 227
Bsp119I	TTCGAA	1 cut(s)	38
Bsp1286I	GDGCHC	3 cut(s)	179, 275, 285
Bsp143I	GATC	2 cut(s)	211, 569
Bsp19I	CCATGG	1 cut(s)	300
BspACI	CCGC	5 cut(s)	147, 215, 243, 305, 384
BspANI	GGCC	2 cut(s)	141, 316
BspCNI	CTCAG	2 cut(s)	324, 508
BspLI	GGNNCC	3 cut(s)	197, 264, 284
BspPI	GGATC	1 cut(s)	206
BspT104I	TTCGAA	1 cut(s)	38
BspTNI	GGTCTC	2 cut(s)	134, 290
BsrI	ACTGG	4 cut(s)	46, 157, 168, 199
BssECI	CCNNGG	4 cut(s)	227, 278, 300, 378
BssMI	GATC	2 cut(s)	211, 569
BssT1I	CCWWGG	1 cut(s)	300
Bst4CI	ACNGT	2 cut(s)	270, 291
Bst6I	CTCTTC	1 cut(s)	587
BstBI	TTCGAA	1 cut(s)	38
BstDEI	CTNAG	2 cut(s)	311, 516
BstDSI	CCRYGG	1 cut(s)	300
BstF5I	GGATG	5 cut(s)	214, 337, 435, 484, 564
BstKTI	GATC	2 cut(s)	214, 572
BstMAI	GTCTC	3 cut(s)	134, 290, 525
BstMBI	GATC	2 cut(s)	211, 569
BstNSI	RCATGY	2 cut(s)	325, 391
BstSCI	CCNGG	5 cut(s)	124, 226, 227, 277, 377
BstSLI	GKGCMC	1 cut(s)	275
BstV2I	GAAGAC	1 cut(s)	394
BsuRI	GGCC	2 cut(s)	141, 316
BtgI	CCRYGG	1 cut(s)	300
BtsCI	GGATG	5 cut(s)	214, 337, 435, 484, 564
BtsI	GCAGTG	1 cut(s)	252
BtsIMutI	CAGTG	2 cut(s)	161, 252
CaiI	CAGNNNCTG	1 cut(s)	163
Cfr13I	GGNCC	1 cut(s)	139
Cfr9I	CCCGGG	1 cut(s)	227
Csp6I	GTAC	3 cut(s)	292, 358, 601
CviAII	CATG	3 cut(s)	301, 322, 388
CviQI	GTAC	3 cut(s)	292, 358, 601
DdeI	CTNAG	2 cut(s)	311, 516
DpnI	GATC	2 cut(s)	213, 571
DpnII	GATC	2 cut(s)	211, 569
Eam1104I	CTCTTC	1 cut(s)	587
EarI	CTCTTC	1 cut(s)	587
EciI	GGCGGA	1 cut(s)	204
Eco130I	CCWWGG	1 cut(s)	300
Eco24I	GRGCYC	2 cut(s)	179, 285
Eco31I	GGTCTC	2 cut(s)	134, 290
Eco88I	CYCGRG	2 cut(s)	172, 227
EcoT14I	CCWWGG	1 cut(s)	300
EcoT38I	GRGCYC	2 cut(s)	179, 285
ErhI	CCWWGG	1 cut(s)	300
FaeI	CATG	3 cut(s)	304, 325, 391
FaiI	YATR	6 cut(s)	302, 323, 374, 389, 393, 432
FatI	CATG	3 cut(s)	300, 321, 387
Fnu4HI	GCNGC	1 cut(s)	385
FokI	GGATG	5 cut(s)	221, 344, 422, 491, 551
FriOI	GRGCYC	2 cut(s)	179, 285
Fsp4HI	GCNGC	1 cut(s)	385
FspBI	CTAG	2 cut(s)	425, 604
GluI	GCNGC	1 cut(s)	385
GsaI	CCCAGC	1 cut(s)	459
GsuI	CTGGAG	1 cut(s)	185
HaeIII	GGCC	2 cut(s)	141, 316
HapII	CCGG	4 cut(s)	125, 228, 278, 378
Hin1II	CATG	3 cut(s)	304, 325, 391
HinfI	GANTC	3 cut(s)	461, 518, 541
HpaII	CCGG	4 cut(s)	125, 228, 278, 378
HphI	GGTGA	1 cut(s)	213
Hpy188I	TCNGA	5 cut(s)	205, 287, 328, 546, 569
Hpy188III	TCNNGA	3 cut(s)	439, 524, 533
HpyAV	CCTTC	4 cut(s)	45, 109, 228, 250
HpyCH4III	ACNGT	2 cut(s)	270, 291
HpyCH4V	TGCA	1 cut(s)	77
HpyF3I	CTNAG	2 cut(s)	311, 516
Hsp92II	CATG	3 cut(s)	304, 325, 391
Kzo9I	GATC	2 cut(s)	211, 569
LmnI	GCTCC	2 cut(s)	262, 288
LweI	GCATC	2 cut(s)	86, 444
MaeI	CTAG	2 cut(s)	425, 604
MaeIII	GTNAC	1 cut(s)	159
MalI	GATC	2 cut(s)	213, 571
MboI	GATC	2 cut(s)	211, 569
MboII	GAAGA	4 cut(s)	6, 394, 454, 604
MhlI	GDGCHC	3 cut(s)	179, 275, 285
MluCI	AATT	4 cut(s)	40, 63, 72, 585
MlyI	GAGTC	2 cut(s)	470, 527
MmeI	TCCRAC	2 cut(s)	306, 310
MseI	TTAA	1 cut(s)	239
MslI	CAYNNNNRTG	1 cut(s)	392
MspI	CCGG	4 cut(s)	125, 228, 278, 378
MspR9I	CCNGG	5 cut(s)	126, 228, 229, 279, 379
NciI	CCSGG	5 cut(s)	126, 228, 229, 279, 379
NcoI	CCATGG	1 cut(s)	300
NdeII	GATC	2 cut(s)	211, 569
NlaIII	CATG	3 cut(s)	304, 325, 391
NlaIV	GGNNCC	3 cut(s)	197, 264, 284
NmuCI	GTSAC	1 cut(s)	159
NspI	RCATGY	2 cut(s)	325, 391
NspV	TTCGAA	1 cut(s)	38
PciI	ACATGT	1 cut(s)	321
PfeI	GAWTC	1 cut(s)	541
PflFI	GACNNNGTC	1 cut(s)	126
PflMI	CCANNNNNTGG	1 cut(s)	163
PkrI	GCNGC	1 cut(s)	386
PleI	GAGTC	2 cut(s)	469, 526
PpsI	GAGTC	2 cut(s)	469, 526
PscI	ACATGT	1 cut(s)	321
PspFI	CCCAGC	1 cut(s)	455
PspN4I	GGNNCC	3 cut(s)	197, 264, 284
PspPI	GGNCC	1 cut(s)	139
PstNI	CAGNNNCTG	1 cut(s)	163
PsyI	GACNNNGTC	1 cut(s)	126
RsaI	GTAC	3 cut(s)	293, 359, 602
RsaNI	GTAC	3 cut(s)	292, 358, 601
RseI	CAYNNNNRTG	1 cut(s)	392
SaqAI	TTAA	1 cut(s)	239
SatI	GCNGC	1 cut(s)	385
Sau3AI	GATC	2 cut(s)	211, 569
Sau96I	GGNCC	1 cut(s)	139
ScaI	AGTACT	1 cut(s)	602
SchI	GAGTC	2 cut(s)	470, 527
ScrFI	CCNGG	5 cut(s)	126, 228, 229, 279, 379
SduI	GDGCHC	3 cut(s)	179, 275, 285
SetI	ASST	7 cut(s)	402, 457, 492, 503, 517, 553, 581
SfaNI	GCATC	2 cut(s)	86, 444
SfuI	TTCGAA	1 cut(s)	38
SmaI	CCCGGG	1 cut(s)	229
SmiMI	CAYNNNNRTG	1 cut(s)	392
Sse9I	AATT	4 cut(s)	40, 63, 72, 585
SsiI	CCGC	5 cut(s)	147, 215, 243, 305, 384
SspMI	CTAG	2 cut(s)	425, 604
StyD4I	CCNGG	5 cut(s)	124, 226, 227, 277, 377
StyI	CCWWGG	1 cut(s)	300
TaaI	ACNGT	2 cut(s)	270, 291
TaqI	TCGA	3 cut(s)	38, 186, 525
TasI	AATT	4 cut(s)	40, 63, 72, 585
TatI	WGTACW	1 cut(s)	600
TauI	GCSGC	1 cut(s)	387
TfiI	GAWTC	1 cut(s)	541
Tru1I	TTAA	1 cut(s)	239
Tru9I	TTAA	1 cut(s)	239
TscAI	CASTG	2 cut(s)	168, 252
TseFI	GTSAC	1 cut(s)	159
Tsp45I	GTSAC	1 cut(s)	159
TspDTI	ATGAA	1 cut(s)	348
TspGWI	ACGGA	1 cut(s)	122
TspMI	CCCGGG	1 cut(s)	227
TspRI	CASTG	2 cut(s)	168, 252
Tth111I	GACNNNGTC	1 cut(s)	126
Van91I	CCANNNNNTGG	1 cut(s)	163
XapI	RAATTY	1 cut(s)	40
XceI	RCATGY	2 cut(s)	325, 391
XmaI	CCCGGG	1 cut(s)	227
XspI	CTAG	2 cut(s)	425, 604
ZrmI	AGTACT	1 cut(s)	602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.