Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029813.1

Orthogroup ID

OG0014121

Physical Location & Seq

Genomic Coordinates Forward (+)

133 .. 1887

Gene Structure 1755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029813.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

atggcagcttcaacttcttccctcatttccaccacttcgaatttcctgtttcgccccaaaactctctcccaaattccatccctctcctttcctcccacaaccgcaaagcctctcgttcaccggacccgacccggccccagttcgggcctgaccgtcaatgtccagtcgctggagttctccggctcgttcttcgagggcggcgggttccagtcggaggacgacccgaattctccgtccgggccgggcctaaccgccgcggaggacaaggaggacccgccgtgcccgccggggctccggcagtacgagaccatggcggttctcagacccgatatgtctgaggatgaaagactggctcttacccagaagtatgaggagttgcttatagctggaggtggcatgtatgtggaggtcttcaacagaggagtgattccactagcctatagcatccagaagaaaaacaaagctggagaatccaacacttacctggatggcatctacctactctttacgtacttcacaaaacctgagtctctcgagtttcttgaacagaatttgaaagctgatgacaatgtcatccgatctatgagtttcaaaataaggaagaggaagtactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0019843 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0070181 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S6

Protein Analysis

204

Amino Acids

22.56

Weight (kDa)

5.57

Isoelectric Point (pI)

49.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64510 AT1G64510
fragaria_vesca	FvH4_5g11660
malus_domestica	MD06G1111400.v1.1 MD14G1132700.v1.1
prunus_persica	Prupe.5G124200_v2.0.a1
pyrus_communis	pycom06g10440
rosa_chinensis	RchiOBHm_Chr7g0186131
rosa_laevigata	RLG00000004861
rosa_multiflora	Rmu_sc0000194.1_g000031 Rmu_sc0029813.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268400
rosa_rugosa	Rorug06G0472200
rosa_samantha	Rh7AG069300 Rh7BG085300 Rh7CG078800
rosa_wichuraiana	Rw7G006560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	169
AccII	CGCG	1 cut(s)	257
AciI	CCGC	9 cut(s)	102, 198, 201, 252, 255, 257, 275, 284, 314
AcsI	RAATTY	4 cut(s)	40, 72, 226, 550
AfaI	GTAC	3 cut(s)	302, 512, 611
AfiI	CCNNNNNNNGG	4 cut(s)	142, 143, 169, 214
AgsI	TTSAA	5 cut(s)	12, 415, 545, 556, 592
AjnI	CCWGG	1 cut(s)	483
AluBI	AGCT	4 cut(s)	8, 386, 464, 560
AluI	AGCT	4 cut(s)	8, 386, 464, 560
Alw26I	GTCTC	2 cut(s)	299, 534
AlwNI	CAGNNNCTG	1 cut(s)	169
Ama87I	CYCGRG	1 cut(s)	533
AoxI	GGCC	4 cut(s)	133, 145, 239, 244
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	4 cut(s)	40, 72, 226, 550
ArsI	GACNNNNNNTTYG	4 cut(s)	218, 250, 512, 544
AspS9I	GGNCC	6 cut(s)	123, 134, 145, 239, 244, 271
AsuC2I	CCSGG	4 cut(s)	132, 238, 243, 288
AsuHPI	GGTGA	1 cut(s)	110
AsuII	TTCGAA	1 cut(s)	38
AvaI	CYCGRG	1 cut(s)	533
AvaII	GGWCC	2 cut(s)	123, 271
BaeGI	GKGCMC	1 cut(s)	284
BanII	GRGCYC	1 cut(s)	294
BarI	GAAGNNNNNNTAC	1 cut(s)	593
BbsI	GAAGAC	1 cut(s)	403
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	2 cut(s)	85, 482
BceAI	ACGGC	1 cut(s)	262
BciT130I	CCWGG	1 cut(s)	485
BcnI	CCSGG	4 cut(s)	132, 238, 243, 288
BcoDI	GTCTC	2 cut(s)	299, 534
BfaI	CTAG	2 cut(s)	434, 613
BfmI	CTRYAG	1 cut(s)	439
BisI	GCNGC	3 cut(s)	6, 199, 255
BlsI	GCNGC	3 cut(s)	7, 200, 256
BmcAI	AGTACT	1 cut(s)	611
Bme1390I	CCNGG	5 cut(s)	132, 238, 243, 288, 485
Bme18I	GGWCC	2 cut(s)	123, 271
BmeT110I	CYCGRG	1 cut(s)	533
BmgT120I	GGNCC	6 cut(s)	123, 134, 145, 239, 244, 271
BmiI	GGNNCC	5 cut(s)	125, 136, 206, 273, 293
BmrFI	CCNGG	5 cut(s)	132, 238, 243, 288, 485
BmrI	ACTGGG	1 cut(s)	132
BmsI	GCATC	2 cut(s)	453, 501
BmuI	ACTGGG	1 cut(s)	132
BpiI	GAAGAC	1 cut(s)	403
BpmI	CTGGAG	3 cut(s)	191, 408, 486
Bpu14I	TTCGAA	1 cut(s)	38
BpuMI	CCSGG	4 cut(s)	132, 238, 243, 288
BsaAI	YACGTR	1 cut(s)	510
BsaI	GGTCTC	1 cut(s)	299
BsaJI	CCNNGG	3 cut(s)	255, 287, 309
BsaWI	WCCGGW	1 cut(s)	120
Bsc4I	CCNNNNNNNGG	4 cut(s)	142, 143, 169, 214
Bse1I	ACTGG	4 cut(s)	138, 163, 208, 354
BseBI	CCWGG	1 cut(s)	485
BseDI	CCNNGG	3 cut(s)	255, 287, 309
BseGI	GGATG	5 cut(s)	77, 346, 444, 493, 573
BseLI	CCNNNNNNNGG	4 cut(s)	142, 143, 169, 214
BseMII	CTCAG	3 cut(s)	327, 334, 516
BseNI	ACTGG	4 cut(s)	138, 163, 208, 354
BseRI	GAGGAG	2 cut(s)	386, 435
BseSI	GKGCMC	1 cut(s)	284
BseXI	GCAGC	1 cut(s)	17
Bsh1236I	CGCG	1 cut(s)	257
BshFI	GGCC	4 cut(s)	135, 147, 241, 246
BsiHKCI	CYCGRG	1 cut(s)	533
BsiSI	CCGG	7 cut(s)	121, 132, 180, 237, 242, 287, 295
BslI	CCNNNNNNNGG	4 cut(s)	142, 143, 169, 214
BsmAI	GTCTC	2 cut(s)	299, 534
BsnI	GGCC	4 cut(s)	135, 147, 241, 246
Bso31I	GGTCTC	1 cut(s)	299
BsoBI	CYCGRG	1 cut(s)	533
Bsp119I	TTCGAA	1 cut(s)	38
Bsp1286I	GDGCHC	2 cut(s)	284, 294
Bsp143I	GATC	1 cut(s)	578
Bsp19I	CCATGG	1 cut(s)	309
BspACI	CCGC	9 cut(s)	102, 198, 201, 252, 255, 257, 275, 284, 314
BspANI	GGCC	4 cut(s)	135, 147, 241, 246
BspCNI	CTCAG	3 cut(s)	328, 333, 517
BspFNI	CGCG	1 cut(s)	257
BspLI	GGNNCC	5 cut(s)	125, 136, 206, 273, 293
BspT104I	TTCGAA	1 cut(s)	38
BspTNI	GGTCTC	1 cut(s)	299
BsrI	ACTGG	4 cut(s)	138, 163, 208, 354
BssECI	CCNNGG	3 cut(s)	255, 287, 309
BssMI	GATC	1 cut(s)	578
BssT1I	CCWWGG	1 cut(s)	309
Bst2UI	CCWGG	1 cut(s)	485
Bst4CI	ACNGT	1 cut(s)	154
Bst6I	CTCTTC	1 cut(s)	596
BstBAI	YACGTR	1 cut(s)	510
BstBI	TTCGAA	1 cut(s)	38
BstC8I	GCNNGC	1 cut(s)	284
BstDEI	CTNAG	3 cut(s)	320, 336, 525
BstDSI	CCRYGG	2 cut(s)	255, 309
BstF5I	GGATG	5 cut(s)	77, 346, 444, 493, 573
BstFNI	CGCG	1 cut(s)	257
BstKTI	GATC	1 cut(s)	581
BstMAI	GTCTC	2 cut(s)	299, 534
BstMBI	GATC	1 cut(s)	578
BstMWI	GCNNNNNNNGC	1 cut(s)	283
BstNI	CCWGG	1 cut(s)	485
BstNSI	RCATGY	1 cut(s)	400
BstSCI	CCNGG	5 cut(s)	130, 236, 241, 286, 483
BstSFI	CTRYAG	1 cut(s)	439
BstSLI	GKGCMC	1 cut(s)	284
BstSNI	TACGTA	1 cut(s)	510
BstUI	CGCG	1 cut(s)	257
BstV1I	GCAGC	1 cut(s)	17
BstV2I	GAAGAC	1 cut(s)	403
BsuRI	GGCC	4 cut(s)	135, 147, 241, 246
BtgI	CCRYGG	2 cut(s)	255, 309
BtsCI	GGATG	5 cut(s)	77, 346, 444, 493, 573
Cac8I	GCNNGC	1 cut(s)	284
CaiI	CAGNNNCTG	1 cut(s)	169
Cfr13I	GGNCC	6 cut(s)	123, 134, 145, 239, 244, 271
Cfr42I	CCGCGG	1 cut(s)	258
Csp6I	GTAC	3 cut(s)	301, 511, 610
CviAII	CATG	2 cut(s)	310, 397
CviQI	GTAC	3 cut(s)	301, 511, 610
DdeI	CTNAG	3 cut(s)	320, 336, 525
DpnI	GATC	1 cut(s)	580
DpnII	GATC	1 cut(s)	578
Eam1104I	CTCTTC	1 cut(s)	596
EarI	CTCTTC	1 cut(s)	596
Eco105I	TACGTA	1 cut(s)	510
Eco130I	CCWWGG	1 cut(s)	309
Eco24I	GRGCYC	1 cut(s)	294
Eco31I	GGTCTC	1 cut(s)	299
Eco47I	GGWCC	2 cut(s)	123, 271
Eco88I	CYCGRG	1 cut(s)	533
EcoO109I	RGGNCCY	1 cut(s)	271
EcoRI	GAATTC	1 cut(s)	226
EcoRII	CCWGG	1 cut(s)	483
EcoT14I	CCWWGG	1 cut(s)	309
EcoT38I	GRGCYC	1 cut(s)	294
ErhI	CCWWGG	1 cut(s)	309
FaeI	CATG	2 cut(s)	313, 400
FaiI	YATR	8 cut(s)	311, 332, 369, 383, 398, 402, 441, 584
FatI	CATG	2 cut(s)	309, 396
FauI	CCCGC	3 cut(s)	194, 282, 291
Fnu4HI	GCNGC	3 cut(s)	6, 199, 255
FokI	GGATG	5 cut(s)	64, 353, 431, 500, 560
FriOI	GRGCYC	1 cut(s)	294
Fsp4HI	GCNGC	3 cut(s)	6, 199, 255
FspBI	CTAG	2 cut(s)	434, 613
GluI	GCNGC	3 cut(s)	6, 199, 255
GsuI	CTGGAG	3 cut(s)	191, 408, 486
HaeIII	GGCC	4 cut(s)	135, 147, 241, 246
HapII	CCGG	7 cut(s)	121, 132, 180, 237, 242, 287, 295
Hin1II	CATG	2 cut(s)	313, 400
HinfI	GANTC	3 cut(s)	427, 470, 527
HpaII	CCGG	7 cut(s)	121, 132, 180, 237, 242, 287, 295
HphI	GGTGA	1 cut(s)	110
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	4 cut(s)	214, 323, 337, 578
Hpy188III	TCNNGA	3 cut(s)	448, 533, 542
Hpy8I	GTNNAC	1 cut(s)	118
HpyCH4III	ACNGT	1 cut(s)	154
HpyCH4IV	ACGT	1 cut(s)	509
HpyF10VI	GCNNNNNNNGC	1 cut(s)	283
HpyF3I	CTNAG	3 cut(s)	320, 336, 525
HpySE526I	ACGT	1 cut(s)	509
Hsp92II	CATG	2 cut(s)	313, 400
KspI	CCGCGG	1 cut(s)	258
Kzo9I	GATC	1 cut(s)	578
LmnI	GCTCC	1 cut(s)	297
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	2 cut(s)	453, 501
MaeI	CTAG	2 cut(s)	434, 613
MaeII	ACGT	1 cut(s)	509
MalI	GATC	1 cut(s)	580
MboI	GATC	1 cut(s)	578
MboII	GAAGA	5 cut(s)	9, 181, 403, 463, 613
MhlI	GDGCHC	2 cut(s)	284, 294
MluCI	AATT	4 cut(s)	40, 72, 226, 550
MlyI	GAGTC	1 cut(s)	536
MmeI	TCCRAC	2 cut(s)	192, 498
MslI	CAYNNNNRTG	1 cut(s)	401
MspA1I	CMGCKG	1 cut(s)	257
MspI	CCGG	7 cut(s)	121, 132, 180, 237, 242, 287, 295
MspR9I	CCNGG	5 cut(s)	132, 238, 243, 288, 485
MvaI	CCWGG	1 cut(s)	485
MvnI	CGCG	1 cut(s)	257
MwoI	GCNNNNNNNGC	1 cut(s)	283
NciI	CCSGG	4 cut(s)	132, 238, 243, 288
NcoI	CCATGG	1 cut(s)	309
NdeII	GATC	1 cut(s)	578
NlaIII	CATG	2 cut(s)	313, 400
NlaIV	GGNNCC	5 cut(s)	125, 136, 206, 273, 293
NspI	RCATGY	1 cut(s)	400
NspV	TTCGAA	1 cut(s)	38
PaeR7I	CTCGAG	1 cut(s)	533
PfeI	GAWTC	2 cut(s)	427, 470
PflFI	GACNNNGTC	1 cut(s)	569
PflMI	CCANNNNNTGG	1 cut(s)	169
PkrI	GCNGC	3 cut(s)	7, 200, 256
PleI	GAGTC	1 cut(s)	535
PpsI	GAGTC	1 cut(s)	535
Ppu21I	YACGTR	1 cut(s)	510
PpuMI	RGGWCCY	1 cut(s)	271
Psp5II	RGGWCCY	1 cut(s)	271
Psp6I	CCWGG	1 cut(s)	483
PspGI	CCWGG	1 cut(s)	483
PspN4I	GGNNCC	5 cut(s)	125, 136, 206, 273, 293
PspPI	GGNCC	6 cut(s)	123, 134, 145, 239, 244, 271
PspPPI	RGGWCCY	1 cut(s)	271
PstNI	CAGNNNCTG	1 cut(s)	169
PsyI	GACNNNGTC	1 cut(s)	569
RsaI	GTAC	3 cut(s)	302, 512, 611
RsaNI	GTAC	3 cut(s)	301, 511, 610
RseI	CAYNNNNRTG	1 cut(s)	401
SacII	CCGCGG	1 cut(s)	258
SatI	GCNGC	3 cut(s)	6, 199, 255
Sau3AI	GATC	1 cut(s)	578
Sau96I	GGNCC	6 cut(s)	123, 134, 145, 239, 244, 271
ScaI	AGTACT	1 cut(s)	611
SchI	GAGTC	1 cut(s)	536
ScrFI	CCNGG	5 cut(s)	132, 238, 243, 288, 485
SduI	GDGCHC	2 cut(s)	284, 294
SfaNI	GCATC	2 cut(s)	453, 501
SfcI	CTRYAG	1 cut(s)	439
Sfr274I	CTCGAG	1 cut(s)	533
Sfr303I	CCGCGG	1 cut(s)	258
SfuI	TTCGAA	1 cut(s)	38
SgrBI	CCGCGG	1 cut(s)	258
SinI	GGWCC	2 cut(s)	123, 271
SlaI	CTCGAG	1 cut(s)	533
SmiMI	CAYNNNNRTG	1 cut(s)	401
SmlI	CTYRAG	1 cut(s)	533
SmoI	CTYRAG	1 cut(s)	533
SnaBI	TACGTA	1 cut(s)	510
Sse9I	AATT	4 cut(s)	40, 72, 226, 550
SsiI	CCGC	9 cut(s)	102, 198, 201, 252, 255, 257, 275, 284, 314
SspMI	CTAG	2 cut(s)	434, 613
StyD4I	CCNGG	5 cut(s)	130, 236, 241, 286, 483
StyI	CCWWGG	1 cut(s)	309
TaaI	ACNGT	1 cut(s)	154
TaiI	ACGT	1 cut(s)	512
TaqI	TCGA	3 cut(s)	38, 192, 534
TasI	AATT	4 cut(s)	40, 72, 226, 550
TatI	WGTACW	1 cut(s)	609
TauI	GCSGC	2 cut(s)	201, 257
TfiI	GAWTC	2 cut(s)	427, 470
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	1 cut(s)	357
TspGWI	ACGGA	1 cut(s)	222
Tth111I	GACNNNGTC	1 cut(s)	569
Van91I	CCANNNNNTGG	1 cut(s)	169
VpaK11BI	GGWCC	2 cut(s)	123, 271
XapI	RAATTY	4 cut(s)	40, 72, 226, 550
XceI	RCATGY	1 cut(s)	400
XcmI	CCANNNNNNNNNTGG	1 cut(s)	481
XhoI	CTCGAG	1 cut(s)	533
XspI	CTAG	2 cut(s)	434, 613
ZrmI	AGTACT	1 cut(s)	611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.