Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0014121

Physical Location & Seq

Genomic Coordinates Forward (+)

4865012 .. 4868438

Gene Structure 3427 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG069300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGTCCCTTTGTCCGGCCTCTCCCATAATAGTCATCCCCAGTTTCCTTATCAATTATCCACTGAGGAACACACTCTTTTCTGCTTCAAAACAATGGCAGCTTCAACTTCTTCCCTCATTTCCACCACTTCGAATTTCCTGTTTCGCCCCAAAACTCTCTCCCAAATTCCATCCCTCTCCTTTCCTCCCACAACCGCAAAGCCTCTCGTTCACCGGACCCGACCCGGCCCCAGTTCGGGCCTGACCGTCAATGTCCAGTCGCTGGAGTTCTCCGGCTCGTTCTTCGAGGGCGGCGGGTTCCAGTCGGAGGACGACCCGAATTCTCCGTCCGGGCCGGGCCTAACCGCCGCGGAGGACAAGGAGGACCCGCCGTGCCCGCCGGGGCTCCGGCAGTACGAGACCATGGCGGTTCTCAGACCCGATATGTCTGAGGATGAAAGACTGGCTCTTACCCAGAAGTATGAGGAGTTGCTTATAGCTGGAGGTGGCATGTATGTGGAGGTCTTCAACAGAGGAGTGATTCCACTAGCCTATAGCATCCAGAAGAAAAACAAAGCTGGAGAATCCAACACTTACCTGGATGGCATCTACCTACTCTTTACATACTTCACAAAACCTGAGTCTCTCGAGTTTCTTGAACAGAATTTGAAAGCTGATGACAATGTCATCCGATCTATGAGTTTCAAAATAAGGAAGAGGAAGTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0019843 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0070181 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S6

Protein Analysis

235

Amino Acids

26.12

Weight (kDa)

5.86

Isoelectric Point (pI)

48.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S6	PF01250	131 - 229	1.2e-18	Ribosomal protein S6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64510 AT1G64510
fragaria_vesca	FvH4_5g11660
malus_domestica	MD06G1111400.v1.1 MD14G1132700.v1.1
prunus_persica	Prupe.5G124200_v2.0.a1
pyrus_communis	pycom06g10440
rosa_chinensis	RchiOBHm_Chr7g0186131
rosa_laevigata	RLG00000004861
rosa_multiflora	Rmu_sc0000194.1_g000031 Rmu_sc0029813.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268400
rosa_rugosa	Rorug06G0472200
rosa_samantha	Rh7AG069300 Rh7BG085300 Rh7CG078800
rosa_wichuraiana	Rw7G006560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	262
AccII	CGCG	1 cut(s)	350
AciI	CCGC	9 cut(s)	195, 291, 294, 345, 348, 350, 368, 377, 407
AcsI	RAATTY	4 cut(s)	133, 165, 319, 643
AfaI	GTAC	2 cut(s)	395, 704
AfiI	CCNNNNNNNGG	5 cut(s)	14, 235, 236, 262, 307
AgsI	TTSAA	6 cut(s)	88, 105, 508, 638, 649, 685
AjnI	CCWGG	1 cut(s)	576
AluBI	AGCT	4 cut(s)	101, 479, 557, 653
AluI	AGCT	4 cut(s)	101, 479, 557, 653
Alw26I	GTCTC	2 cut(s)	392, 627
AlwNI	CAGNNNCTG	1 cut(s)	262
Ama87I	CYCGRG	1 cut(s)	626
AoxI	GGCC	5 cut(s)	16, 226, 238, 332, 337
ApeKI	GCWGC	1 cut(s)	98
ApoI	RAATTY	4 cut(s)	133, 165, 319, 643
ArsI	GACNNNNNNTTYG	4 cut(s)	311, 343, 605, 637
AspS9I	GGNCC	7 cut(s)	4, 216, 227, 238, 332, 337, 364
AsuC2I	CCSGG	4 cut(s)	225, 331, 336, 381
AsuHPI	GGTGA	1 cut(s)	203
AsuII	TTCGAA	1 cut(s)	131
AvaI	CYCGRG	1 cut(s)	626
AvaII	GGWCC	3 cut(s)	4, 216, 364
BaeGI	GKGCMC	1 cut(s)	377
BanII	GRGCYC	1 cut(s)	387
BarI	GAAGNNNNNNTAC	1 cut(s)	686
BbsI	GAAGAC	1 cut(s)	496
BbvI	GCAGC	1 cut(s)	110
BccI	CCATC	2 cut(s)	178, 575
BceAI	ACGGC	1 cut(s)	355
BciT130I	CCWGG	1 cut(s)	578
BcnI	CCSGG	4 cut(s)	225, 331, 336, 381
BcoDI	GTCTC	2 cut(s)	392, 627
BfaI	CTAG	2 cut(s)	527, 706
BfmI	CTRYAG	1 cut(s)	532
BisI	GCNGC	3 cut(s)	99, 292, 348
BlsI	GCNGC	3 cut(s)	100, 293, 349
BmcAI	AGTACT	1 cut(s)	704
Bme1390I	CCNGG	5 cut(s)	225, 331, 336, 381, 578
Bme18I	GGWCC	3 cut(s)	4, 216, 364
BmeT110I	CYCGRG	1 cut(s)	626
BmgT120I	GGNCC	7 cut(s)	4, 216, 227, 238, 332, 337, 364
BmiI	GGNNCC	6 cut(s)	6, 218, 229, 299, 366, 386
BmrFI	CCNGG	5 cut(s)	225, 331, 336, 381, 578
BmrI	ACTGGG	2 cut(s)	34, 225
BmsI	GCATC	2 cut(s)	546, 594
BmuI	ACTGGG	2 cut(s)	34, 225
BpiI	GAAGAC	1 cut(s)	496
BpmI	CTGGAG	3 cut(s)	284, 501, 579
Bpu14I	TTCGAA	1 cut(s)	131
BpuMI	CCSGG	4 cut(s)	225, 331, 336, 381
BsaI	GGTCTC	1 cut(s)	392
BsaJI	CCNNGG	3 cut(s)	348, 380, 402
BsaWI	WCCGGW	1 cut(s)	213
Bsc4I	CCNNNNNNNGG	5 cut(s)	14, 235, 236, 262, 307
Bse1I	ACTGG	5 cut(s)	40, 231, 256, 301, 447
BseBI	CCWGG	1 cut(s)	578
BseDI	CCNNGG	3 cut(s)	348, 380, 402
BseGI	GGATG	6 cut(s)	34, 170, 439, 537, 586, 666
BseLI	CCNNNNNNNGG	5 cut(s)	14, 235, 236, 262, 307
BseMII	CTCAG	4 cut(s)	54, 420, 427, 609
BseNI	ACTGG	5 cut(s)	40, 231, 256, 301, 447
BseRI	GAGGAG	2 cut(s)	479, 528
BseSI	GKGCMC	1 cut(s)	377
BseXI	GCAGC	1 cut(s)	110
Bsh1236I	CGCG	1 cut(s)	350
BshFI	GGCC	5 cut(s)	18, 228, 240, 334, 339
BsiHKCI	CYCGRG	1 cut(s)	626
BsiSI	CCGG	8 cut(s)	15, 214, 225, 273, 330, 335, 380, 388
BslI	CCNNNNNNNGG	5 cut(s)	14, 235, 236, 262, 307
BsmAI	GTCTC	2 cut(s)	392, 627
BsnI	GGCC	5 cut(s)	18, 228, 240, 334, 339
Bso31I	GGTCTC	1 cut(s)	392
BsoBI	CYCGRG	1 cut(s)	626
Bsp119I	TTCGAA	1 cut(s)	131
Bsp1286I	GDGCHC	2 cut(s)	377, 387
Bsp143I	GATC	1 cut(s)	671
Bsp19I	CCATGG	1 cut(s)	402
BspACI	CCGC	9 cut(s)	195, 291, 294, 345, 348, 350, 368, 377, 407
BspANI	GGCC	5 cut(s)	18, 228, 240, 334, 339
BspCNI	CTCAG	4 cut(s)	55, 421, 426, 610
BspFNI	CGCG	1 cut(s)	350
BspLI	GGNNCC	6 cut(s)	6, 218, 229, 299, 366, 386
BspT104I	TTCGAA	1 cut(s)	131
BspTNI	GGTCTC	1 cut(s)	392
BsrI	ACTGG	5 cut(s)	40, 231, 256, 301, 447
BssECI	CCNNGG	3 cut(s)	348, 380, 402
BssMI	GATC	1 cut(s)	671
BssT1I	CCWWGG	1 cut(s)	402
Bst2UI	CCWGG	1 cut(s)	578
Bst4CI	ACNGT	1 cut(s)	247
Bst6I	CTCTTC	1 cut(s)	689
BstBI	TTCGAA	1 cut(s)	131
BstC8I	GCNNGC	1 cut(s)	377
BstDEI	CTNAG	4 cut(s)	63, 413, 429, 618
BstDSI	CCRYGG	2 cut(s)	348, 402
BstF5I	GGATG	6 cut(s)	34, 170, 439, 537, 586, 666
BstFNI	CGCG	1 cut(s)	350
BstKTI	GATC	1 cut(s)	674
BstMAI	GTCTC	2 cut(s)	392, 627
BstMBI	GATC	1 cut(s)	671
BstMWI	GCNNNNNNNGC	1 cut(s)	376
BstNI	CCWGG	1 cut(s)	578
BstNSI	RCATGY	1 cut(s)	493
BstSCI	CCNGG	5 cut(s)	223, 329, 334, 379, 576
BstSFI	CTRYAG	1 cut(s)	532
BstSLI	GKGCMC	1 cut(s)	377
BstUI	CGCG	1 cut(s)	350
BstV1I	GCAGC	1 cut(s)	110
BstV2I	GAAGAC	1 cut(s)	496
BsuRI	GGCC	5 cut(s)	18, 228, 240, 334, 339
BtgI	CCRYGG	2 cut(s)	348, 402
BtsCI	GGATG	6 cut(s)	34, 170, 439, 537, 586, 666
BtsIMutI	CAGTG	1 cut(s)	60
Cac8I	GCNNGC	1 cut(s)	377
CaiI	CAGNNNCTG	1 cut(s)	262
Cfr13I	GGNCC	7 cut(s)	4, 216, 227, 238, 332, 337, 364
Cfr42I	CCGCGG	1 cut(s)	351
Csp6I	GTAC	2 cut(s)	394, 703
CviAII	CATG	2 cut(s)	403, 490
CviQI	GTAC	2 cut(s)	394, 703
DdeI	CTNAG	4 cut(s)	63, 413, 429, 618
DpnI	GATC	1 cut(s)	673
DpnII	GATC	1 cut(s)	671
Eam1104I	CTCTTC	1 cut(s)	689
EarI	CTCTTC	1 cut(s)	689
Eco130I	CCWWGG	1 cut(s)	402
Eco24I	GRGCYC	1 cut(s)	387
Eco31I	GGTCTC	1 cut(s)	392
Eco47I	GGWCC	3 cut(s)	4, 216, 364
Eco88I	CYCGRG	1 cut(s)	626
EcoO109I	RGGNCCY	1 cut(s)	364
EcoRI	GAATTC	1 cut(s)	319
EcoRII	CCWGG	1 cut(s)	576
EcoT14I	CCWWGG	1 cut(s)	402
EcoT38I	GRGCYC	1 cut(s)	387
ErhI	CCWWGG	1 cut(s)	402
FaeI	CATG	2 cut(s)	406, 493
FatI	CATG	2 cut(s)	402, 489
FauI	CCCGC	3 cut(s)	287, 375, 384
Fnu4HI	GCNGC	3 cut(s)	99, 292, 348
FokI	GGATG	6 cut(s)	21, 157, 446, 524, 593, 653
FriOI	GRGCYC	1 cut(s)	387
Fsp4HI	GCNGC	3 cut(s)	99, 292, 348
FspBI	CTAG	2 cut(s)	527, 706
GluI	GCNGC	3 cut(s)	99, 292, 348
GsuI	CTGGAG	3 cut(s)	284, 501, 579
HaeIII	GGCC	5 cut(s)	18, 228, 240, 334, 339
HapII	CCGG	8 cut(s)	15, 214, 225, 273, 330, 335, 380, 388
Hin1II	CATG	2 cut(s)	406, 493
HinfI	GANTC	3 cut(s)	520, 563, 620
HpaII	CCGG	8 cut(s)	15, 214, 225, 273, 330, 335, 380, 388
HphI	GGTGA	1 cut(s)	203
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	4 cut(s)	307, 416, 430, 671
Hpy188III	TCNNGA	3 cut(s)	541, 626, 635
Hpy8I	GTNNAC	1 cut(s)	211
HpyCH4III	ACNGT	1 cut(s)	247
HpyF10VI	GCNNNNNNNGC	1 cut(s)	376
HpyF3I	CTNAG	4 cut(s)	63, 413, 429, 618
Hsp92II	CATG	2 cut(s)	406, 493
KspI	CCGCGG	1 cut(s)	351
Kzo9I	GATC	1 cut(s)	671
LmnI	GCTCC	1 cut(s)	390
Lsp1109I	GCAGC	1 cut(s)	110
LweI	GCATC	2 cut(s)	546, 594
MaeI	CTAG	2 cut(s)	527, 706
MalI	GATC	1 cut(s)	673
MboI	GATC	1 cut(s)	671
MboII	GAAGA	5 cut(s)	102, 274, 496, 556, 706
MhlI	GDGCHC	2 cut(s)	377, 387
MluCI	AATT	5 cut(s)	53, 133, 165, 319, 643
MlyI	GAGTC	1 cut(s)	629
MmeI	TCCRAC	2 cut(s)	285, 591
MslI	CAYNNNNRTG	1 cut(s)	494
MspA1I	CMGCKG	1 cut(s)	350
MspI	CCGG	8 cut(s)	15, 214, 225, 273, 330, 335, 380, 388
MspR9I	CCNGG	5 cut(s)	225, 331, 336, 381, 578
MvaI	CCWGG	1 cut(s)	578
MvnI	CGCG	1 cut(s)	350
MwoI	GCNNNNNNNGC	1 cut(s)	376
NciI	CCSGG	4 cut(s)	225, 331, 336, 381
NcoI	CCATGG	1 cut(s)	402
NdeII	GATC	1 cut(s)	671
NlaIII	CATG	2 cut(s)	406, 493
NlaIV	GGNNCC	6 cut(s)	6, 218, 229, 299, 366, 386
NspI	RCATGY	1 cut(s)	493
NspV	TTCGAA	1 cut(s)	131
PaeR7I	CTCGAG	1 cut(s)	626
PfeI	GAWTC	2 cut(s)	520, 563
PflFI	GACNNNGTC	1 cut(s)	662
PflMI	CCANNNNNTGG	1 cut(s)	262
PkrI	GCNGC	3 cut(s)	100, 293, 349
PleI	GAGTC	1 cut(s)	628
PpsI	GAGTC	1 cut(s)	628
PpuMI	RGGWCCY	1 cut(s)	364
Psp5II	RGGWCCY	1 cut(s)	364
Psp6I	CCWGG	1 cut(s)	576
PspGI	CCWGG	1 cut(s)	576
PspN4I	GGNNCC	6 cut(s)	6, 218, 229, 299, 366, 386
PspPI	GGNCC	7 cut(s)	4, 216, 227, 238, 332, 337, 364
PspPPI	RGGWCCY	1 cut(s)	364
PstNI	CAGNNNCTG	1 cut(s)	262
PsyI	GACNNNGTC	1 cut(s)	662
RsaI	GTAC	2 cut(s)	395, 704
RsaNI	GTAC	2 cut(s)	394, 703
RseI	CAYNNNNRTG	1 cut(s)	494
SacII	CCGCGG	1 cut(s)	351
SatI	GCNGC	3 cut(s)	99, 292, 348
Sau3AI	GATC	1 cut(s)	671
Sau96I	GGNCC	7 cut(s)	4, 216, 227, 238, 332, 337, 364
ScaI	AGTACT	1 cut(s)	704
SchI	GAGTC	1 cut(s)	629
ScrFI	CCNGG	5 cut(s)	225, 331, 336, 381, 578
SduI	GDGCHC	2 cut(s)	377, 387
SetI	ASST	9 cut(s)	103, 481, 487, 504, 559, 579, 594, 619, 655
SfaNI	GCATC	2 cut(s)	546, 594
SfcI	CTRYAG	1 cut(s)	532
Sfr274I	CTCGAG	1 cut(s)	626
Sfr303I	CCGCGG	1 cut(s)	351
SfuI	TTCGAA	1 cut(s)	131
SgrBI	CCGCGG	1 cut(s)	351
SinI	GGWCC	3 cut(s)	4, 216, 364
SlaI	CTCGAG	1 cut(s)	626
SmiMI	CAYNNNNRTG	1 cut(s)	494
SmlI	CTYRAG	1 cut(s)	626
SmoI	CTYRAG	1 cut(s)	626
Sse9I	AATT	5 cut(s)	53, 133, 165, 319, 643
SsiI	CCGC	9 cut(s)	195, 291, 294, 345, 348, 350, 368, 377, 407
SspMI	CTAG	2 cut(s)	527, 706
StyD4I	CCNGG	5 cut(s)	223, 329, 334, 379, 576
StyI	CCWWGG	1 cut(s)	402
TaaI	ACNGT	1 cut(s)	247
TaqI	TCGA	3 cut(s)	131, 285, 627
TasI	AATT	5 cut(s)	53, 133, 165, 319, 643
TatI	WGTACW	1 cut(s)	702
TauI	GCSGC	2 cut(s)	294, 350
TfiI	GAWTC	2 cut(s)	520, 563
TscAI	CASTG	1 cut(s)	67
TseI	GCWGC	1 cut(s)	98
TspDTI	ATGAA	1 cut(s)	450
TspGWI	ACGGA	1 cut(s)	315
TspRI	CASTG	1 cut(s)	67
Tth111I	GACNNNGTC	1 cut(s)	662
Van91I	CCANNNNNTGG	1 cut(s)	262
VpaK11BI	GGWCC	3 cut(s)	4, 216, 364
XapI	RAATTY	4 cut(s)	133, 165, 319, 643
XceI	RCATGY	1 cut(s)	493
XcmI	CCANNNNNNNNNTGG	1 cut(s)	574
XhoI	CTCGAG	1 cut(s)	626
XspI	CTAG	2 cut(s)	527, 706
ZrmI	AGTACT	1 cut(s)	704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.