Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0014121

Physical Location & Seq

Genomic Coordinates Forward (+)

6604172 .. 6606392

Gene Structure 2221 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g11660.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGCAGCTTCTACTACTTCCTCGCTGGTTTCGAATTTCCTGTTTTGCCCCAAGACTCTCTCCCAAATCCCATCTCTGTCCCAATCCCTCTCCTTCCCCCACACAACCGCAAAGCCCCTGGTTTTCCGGACCCGACCCGGCCGCGTCAATGTGCAGTCGCTGGAGTTCTCCGGGTCTTTTTTTGAGGGAGGCGGGTTCCAGTCGGATGACGACCCGAACTCCCCGAACGGGCCGGGTATGACCGCCGTGGAGGACAAGGAGGAGCCGCCGTGCCCGCCGGGGCTCCGGCAGTACGAGACCATGGCGGTTCTCAGACCTGATATGTCGGAGGATGAAAGACTCGCGCTTACTCAGAAGTATGAGGAGTTGCTTATAGCTGGAGGTGGCATGTATGTGGAGGTTTTCAACAGAGGAGTGATTCCGCTAGCCTATAGCATCCAGAAGAAAAACAAAGCTGGAGAATCCAACACTTACCTGGATGGTATCTACCTACTCTTTACCTACTTCACAAAACCCGAGTCTCTTGAGTTTCTTGAGCAGAATCTGAAGGCTGATGATAATGTCATCCGATCTCTGAGTTTCAAAATAAGGAAGAGGAAGTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0019843 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0070181 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S6

Protein Analysis

202

Amino Acids

22.44

Weight (kDa)

5.57

Isoelectric Point (pI)

45.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S6	PF01250	97 - 195	1.9e-18	Ribosomal protein S6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64510 AT1G64510
fragaria_vesca	FvH4_5g11660
malus_domestica	MD06G1111400.v1.1 MD14G1132700.v1.1
prunus_persica	Prupe.5G124200_v2.0.a1
pyrus_communis	pycom06g10440
rosa_chinensis	RchiOBHm_Chr7g0186131
rosa_laevigata	RLG00000004861
rosa_multiflora	Rmu_sc0000194.1_g000031 Rmu_sc0029813.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268400
rosa_rugosa	Rorug06G0472200
rosa_samantha	Rh7AG069300 Rh7BG085300 Rh7CG078800
rosa_wichuraiana	Rw7G006560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	144, 344
AccIII	TCCGGA	1 cut(s)	126
AciI	CCGC	8 cut(s)	108, 142, 192, 243, 266, 275, 305, 422
AcoI	YGGCCR	1 cut(s)	139
AcsI	RAATTY	1 cut(s)	34
AcuI	CTGAAG	1 cut(s)	566
AfaI	GTAC	2 cut(s)	293, 602
AfiI	CCNNNNNNNGG	1 cut(s)	228
AgsI	TTSAA	2 cut(s)	406, 583
AjnI	CCWGG	2 cut(s)	117, 474
AluBI	AGCT	3 cut(s)	8, 377, 455
AluI	AGCT	3 cut(s)	8, 377, 455
Alw26I	GTCTC	2 cut(s)	290, 525
AlwNI	CAGNNNCTG	2 cut(s)	160, 544
Ama87I	CYCGRG	1 cut(s)	515
Aor13HI	TCCGGA	1 cut(s)	126
AoxI	GGCC	2 cut(s)	139, 230
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	1 cut(s)	34
ArsI	GACNNNNNNTTYG	2 cut(s)	503, 535
AspLEI	GCGC	1 cut(s)	346
AspS9I	GGNCC	2 cut(s)	129, 230
AsuC2I	CCSGG	4 cut(s)	138, 172, 234, 279
AsuII	TTCGAA	1 cut(s)	32
AsuNHI	GCTAGC	1 cut(s)	424
AvaI	CYCGRG	1 cut(s)	515
AvaII	GGWCC	1 cut(s)	129
BaeGI	GKGCMC	1 cut(s)	275
BanII	GRGCYC	1 cut(s)	285
BarI	GAAGNNNNNNTAC	1 cut(s)	584
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	2 cut(s)	79, 473
BceAI	ACGGC	2 cut(s)	230, 253
BciT130I	CCWGG	2 cut(s)	119, 476
BcnI	CCSGG	4 cut(s)	138, 172, 234, 279
BcoDI	GTCTC	2 cut(s)	290, 525
BfaI	CTAG	2 cut(s)	425, 604
BfmI	CTRYAG	1 cut(s)	430
BisI	GCNGC	3 cut(s)	6, 142, 266
BlsI	GCNGC	3 cut(s)	7, 143, 267
BmcAI	AGTACT	1 cut(s)	602
Bme1390I	CCNGG	6 cut(s)	119, 138, 172, 234, 279, 476
Bme18I	GGWCC	1 cut(s)	129
BmeT110I	CYCGRG	1 cut(s)	515
BmgT120I	GGNCC	2 cut(s)	129, 230
BmiI	GGNNCC	4 cut(s)	131, 197, 264, 284
BmrFI	CCNGG	6 cut(s)	119, 138, 172, 234, 279, 476
BmsI	GCATC	1 cut(s)	444
BmtI	GCTAGC	1 cut(s)	428
BpmI	CTGGAG	3 cut(s)	182, 399, 477
Bpu14I	TTCGAA	1 cut(s)	32
BpuEI	CTTGAG	2 cut(s)	545, 554
BpuMI	CCSGG	4 cut(s)	138, 172, 234, 279
BsaI	GGTCTC	1 cut(s)	290
BsaJI	CCNNGG	4 cut(s)	117, 246, 278, 300
BsaWI	WCCGGW	1 cut(s)	126
BsaXI	ACNNNNNCTCC	4 cut(s)	203, 233, 254, 284
Bsc4I	CCNNNNNNNGG	1 cut(s)	228
Bse1I	ACTGG	1 cut(s)	199
BseAI	TCCGGA	1 cut(s)	126
BseBI	CCWGG	2 cut(s)	119, 476
BseDI	CCNNGG	4 cut(s)	117, 246, 278, 300
BseGI	GGATG	5 cut(s)	211, 337, 435, 484, 564
BseLI	CCNNNNNNNGG	1 cut(s)	228
BseMII	CTCAG	3 cut(s)	325, 365, 566
BseNI	ACTGG	1 cut(s)	199
BseRI	GAGGAG	3 cut(s)	275, 377, 426
BseSI	GKGCMC	1 cut(s)	275
BseX3I	CGGCCG	1 cut(s)	139
BseXI	GCAGC	1 cut(s)	17
BsgI	GTGCAG	1 cut(s)	173
Bsh1236I	CGCG	2 cut(s)	144, 344
Bsh1285I	CGRYCG	1 cut(s)	142
BshFI	GGCC	2 cut(s)	141, 232
BsiEI	CGRYCG	1 cut(s)	142
BsiHKCI	CYCGRG	1 cut(s)	515
BsiSI	CCGG	6 cut(s)	127, 138, 171, 233, 278, 286
BslFI	GGGAC	1 cut(s)	64
BslI	CCNNNNNNNGG	1 cut(s)	228
BsmAI	GTCTC	2 cut(s)	290, 525
BsmFI	GGGAC	1 cut(s)	64
BsnI	GGCC	2 cut(s)	141, 232
Bso31I	GGTCTC	1 cut(s)	290
BsoBI	CYCGRG	1 cut(s)	515
Bsp119I	TTCGAA	1 cut(s)	32
Bsp1286I	GDGCHC	2 cut(s)	275, 285
Bsp13I	TCCGGA	1 cut(s)	126
Bsp143I	GATC	1 cut(s)	569
Bsp19I	CCATGG	1 cut(s)	300
BspACI	CCGC	8 cut(s)	108, 142, 192, 243, 266, 275, 305, 422
BspANI	GGCC	2 cut(s)	141, 232
BspCNI	CTCAG	3 cut(s)	324, 364, 567
BspEI	TCCGGA	1 cut(s)	126
BspFNI	CGCG	2 cut(s)	144, 344
BspLI	GGNNCC	4 cut(s)	131, 197, 264, 284
BspOI	GCTAGC	1 cut(s)	428
BspT104I	TTCGAA	1 cut(s)	32
BspTNI	GGTCTC	1 cut(s)	290
BsrI	ACTGG	1 cut(s)	199
BssECI	CCNNGG	4 cut(s)	117, 246, 278, 300
BssMI	GATC	1 cut(s)	569
BssT1I	CCWWGG	1 cut(s)	300
Bst2UI	CCWGG	2 cut(s)	119, 476
Bst6I	CTCTTC	1 cut(s)	587
BstBI	TTCGAA	1 cut(s)	32
BstC8I	GCNNGC	2 cut(s)	275, 426
BstDEI	CTNAG	3 cut(s)	311, 351, 575
BstDSI	CCRYGG	2 cut(s)	246, 300
BstF5I	GGATG	5 cut(s)	211, 337, 435, 484, 564
BstFNI	CGCG	2 cut(s)	144, 344
BstHHI	GCGC	1 cut(s)	346
BstKTI	GATC	1 cut(s)	572
BstMAI	GTCTC	2 cut(s)	290, 525
BstMBI	GATC	1 cut(s)	569
BstMCI	CGRYCG	1 cut(s)	142
BstMWI	GCNNNNNNNGC	1 cut(s)	274
BstNI	CCWGG	2 cut(s)	119, 476
BstNSI	RCATGY	1 cut(s)	391
BstSCI	CCNGG	6 cut(s)	117, 136, 170, 232, 277, 474
BstSFI	CTRYAG	1 cut(s)	430
BstSLI	GKGCMC	1 cut(s)	275
BstUI	CGCG	2 cut(s)	144, 344
BstV1I	GCAGC	1 cut(s)	17
BstZI	CGGCCG	1 cut(s)	139
BsuRI	GGCC	2 cut(s)	141, 232
BtgI	CCRYGG	2 cut(s)	246, 300
BtsCI	GGATG	5 cut(s)	211, 337, 435, 484, 564
Cac8I	GCNNGC	2 cut(s)	275, 426
CaiI	CAGNNNCTG	2 cut(s)	160, 544
CfoI	GCGC	1 cut(s)	346
Cfr13I	GGNCC	2 cut(s)	129, 230
CseI	GACGC	1 cut(s)	133
Csp6I	GTAC	2 cut(s)	292, 601
CviAII	CATG	2 cut(s)	301, 388
CviQI	GTAC	2 cut(s)	292, 601
DdeI	CTNAG	3 cut(s)	311, 351, 575
DpnI	GATC	1 cut(s)	571
DpnII	GATC	1 cut(s)	569
EaeI	YGGCCR	1 cut(s)	139
EagI	CGGCCG	1 cut(s)	139
Eam1104I	CTCTTC	1 cut(s)	587
EarI	CTCTTC	1 cut(s)	587
EclXI	CGGCCG	1 cut(s)	139
Eco130I	CCWWGG	1 cut(s)	300
Eco24I	GRGCYC	1 cut(s)	285
Eco31I	GGTCTC	1 cut(s)	290
Eco47I	GGWCC	1 cut(s)	129
Eco52I	CGGCCG	1 cut(s)	139
Eco57I	CTGAAG	1 cut(s)	566
Eco88I	CYCGRG	1 cut(s)	515
EcoRII	CCWGG	2 cut(s)	117, 474
EcoT14I	CCWWGG	1 cut(s)	300
EcoT38I	GRGCYC	1 cut(s)	285
ErhI	CCWWGG	1 cut(s)	300
FaeI	CATG	2 cut(s)	304, 391
FaiI	YATR	8 cut(s)	239, 302, 323, 360, 374, 389, 393, 432
FaqI	GGGAC	1 cut(s)	64
FatI	CATG	2 cut(s)	300, 387
FauI	CCCGC	2 cut(s)	185, 282
Fnu4HI	GCNGC	3 cut(s)	6, 142, 266
FokI	GGATG	5 cut(s)	218, 344, 422, 491, 551
FriOI	GRGCYC	1 cut(s)	285
Fsp4HI	GCNGC	3 cut(s)	6, 142, 266
FspBI	CTAG	2 cut(s)	425, 604
GlaI	GCGC	1 cut(s)	345
GluI	GCNGC	3 cut(s)	6, 142, 266
GsuI	CTGGAG	3 cut(s)	182, 399, 477
HaeIII	GGCC	2 cut(s)	141, 232
HapII	CCGG	6 cut(s)	127, 138, 171, 233, 278, 286
HgaI	GACGC	1 cut(s)	133
HhaI	GCGC	1 cut(s)	346
Hin1II	CATG	2 cut(s)	304, 391
Hin6I	GCGC	1 cut(s)	344
HinP1I	GCGC	1 cut(s)	344
HinfI	GANTC	6 cut(s)	55, 339, 418, 461, 518, 541
HpaII	CCGG	6 cut(s)	127, 138, 171, 233, 278, 286
Hpy188I	TCNGA	7 cut(s)	205, 314, 328, 354, 546, 569, 576
Hpy188III	TCNNGA	4 cut(s)	127, 439, 524, 533
HpyAV	CCTTC	2 cut(s)	103, 541
HpyCH4V	TGCA	1 cut(s)	154
HpyF10VI	GCNNNNNNNGC	1 cut(s)	274
HpyF3I	CTNAG	3 cut(s)	311, 351, 575
Hsp92II	CATG	2 cut(s)	304, 391
HspAI	GCGC	1 cut(s)	344
Kpn2I	TCCGGA	1 cut(s)	126
Kzo9I	GATC	1 cut(s)	569
LmnI	GCTCC	2 cut(s)	262, 288
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	1 cut(s)	444
MaeI	CTAG	2 cut(s)	425, 604
MalI	GATC	1 cut(s)	571
MboI	GATC	1 cut(s)	569
MboII	GAAGA	2 cut(s)	454, 604
MhlI	GDGCHC	2 cut(s)	275, 285
MluCI	AATT	1 cut(s)	34
MlyI	GAGTC	3 cut(s)	49, 333, 527
MmeI	TCCRAC	3 cut(s)	183, 306, 489
MroI	TCCGGA	1 cut(s)	126
MslI	CAYNNNNRTG	1 cut(s)	392
MspI	CCGG	6 cut(s)	127, 138, 171, 233, 278, 286
MspR9I	CCNGG	6 cut(s)	119, 138, 172, 234, 279, 476
MvaI	CCWGG	2 cut(s)	119, 476
MvnI	CGCG	2 cut(s)	144, 344
MwoI	GCNNNNNNNGC	1 cut(s)	274
NciI	CCSGG	4 cut(s)	138, 172, 234, 279
NcoI	CCATGG	1 cut(s)	300
NdeII	GATC	1 cut(s)	569
NheI	GCTAGC	1 cut(s)	424
NlaIII	CATG	2 cut(s)	304, 391
NlaIV	GGNNCC	4 cut(s)	131, 197, 264, 284
NspI	RCATGY	1 cut(s)	391
NspV	TTCGAA	1 cut(s)	32
PcsI	WCGNNNNNNNCGW	1 cut(s)	29
PfeI	GAWTC	3 cut(s)	418, 461, 541
PkrI	GCNGC	3 cut(s)	7, 143, 267
PleI	GAGTC	3 cut(s)	49, 333, 526
PpsI	GAGTC	3 cut(s)	49, 333, 526
Psp6I	CCWGG	2 cut(s)	117, 474
PspGI	CCWGG	2 cut(s)	117, 474
PspN4I	GGNNCC	4 cut(s)	131, 197, 264, 284
PspPI	GGNCC	2 cut(s)	129, 230
PstNI	CAGNNNCTG	2 cut(s)	160, 544
RsaI	GTAC	2 cut(s)	293, 602
RsaNI	GTAC	2 cut(s)	292, 601
RseI	CAYNNNNRTG	1 cut(s)	392
SatI	GCNGC	3 cut(s)	6, 142, 266
Sau3AI	GATC	1 cut(s)	569
Sau96I	GGNCC	2 cut(s)	129, 230
ScaI	AGTACT	1 cut(s)	602
SchI	GAGTC	3 cut(s)	49, 333, 527
ScrFI	CCNGG	6 cut(s)	119, 138, 172, 234, 279, 476
SduI	GDGCHC	2 cut(s)	275, 285
SetI	ASST	9 cut(s)	10, 319, 379, 385, 402, 457, 477, 492, 503
SfaNI	GCATC	1 cut(s)	444
SfcI	CTRYAG	1 cut(s)	430
SfuI	TTCGAA	1 cut(s)	32
SinI	GGWCC	1 cut(s)	129
SmiMI	CAYNNNNRTG	1 cut(s)	392
SmlI	CTYRAG	2 cut(s)	524, 533
SmoI	CTYRAG	2 cut(s)	524, 533
Sse9I	AATT	1 cut(s)	34
SsiI	CCGC	8 cut(s)	108, 142, 192, 243, 266, 275, 305, 422
SspMI	CTAG	2 cut(s)	425, 604
StyD4I	CCNGG	6 cut(s)	117, 136, 170, 232, 277, 474
StyI	CCWWGG	1 cut(s)	300
TaqI	TCGA	1 cut(s)	32
TasI	AATT	1 cut(s)	34
TatI	WGTACW	1 cut(s)	600
TauI	GCSGC	2 cut(s)	144, 268
TfiI	GAWTC	3 cut(s)	418, 461, 541
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	1 cut(s)	348
VpaK11BI	GGWCC	1 cut(s)	129
XapI	RAATTY	1 cut(s)	34
XceI	RCATGY	1 cut(s)	391
XcmI	CCANNNNNNNNNTGG	1 cut(s)	472
XspI	CTAG	2 cut(s)	425, 604
ZrmI	AGTACT	1 cut(s)	602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.