AT1G64640

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012109
Physical Location & Seq
Reverse (-)
24022285 .. 24023424
1140 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G64640.1

Sequence Viewer

Length: 576 bp
ATGGGAGTGATGAGTTTGAGCAAGACGATGGTGGTGGTGGTATTACAGGTGATGATATTGTTGGGACAAGAGATTGGTAAAGTGTCGTCGACTCTATACAAAGTTGGGGACTTGGACGCTTGGGGCATCCCAATTGATGCTAAAGTCTATTCCAAATGGCCCAAATCTCACTCTTTCAAGATCGGTGACTCCCTCTTGTTCTTGTACCCACCAAGCGAAGACTCACTGATTCAAGTGACGCCCTCCAATTTCAAGAGCTGCAACACCAAAGACCCAATCTTGTACATGAACGACGGCAACTCTCTCTTCAACCTCACCCAAAACGGAACCCTATACTTCACAAGTGCAAACCCCGGCCACTGTACCAAGTACCAGAAGCTCCTAGTCTCCGTCGGCACCTACTCCGCCGAAGCAGAGGCCTTGTCTCCGTCTTCTGCCGCCGACGCTCCCTCTTACCAAAACGCCTTCGGGTCCATTCCTCTCTCTCAGAAATCGTCTGCTTCCTCCTCGCTCATTTCTGCTTTCTCCACTGTCGCTGCTTCGCTGGCTTGCGCTGTCGTCGGTGCAATCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

191

Amino Acids

20.25

Weight (kDa)

6.7

Isoelectric Point (pI)

31.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 41 - 123 5.6e-20 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012109)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64640
fragaria_vesca FvH4_5g11040
malus_domestica MD06G1117200.v1.1 MD14G1124500.v1.1
prunus_persica Prupe.5G128300_v2.0.a1
pyrus_communis pycom06g10910 pycom14g11030
rosa_chinensis RchiOBHm_Chr7g0186761
rosa_laevigata RLG00000004818
rosa_multiflora Rmu_co8398473.1_g000001 Rmu_sc0009734.1_g000003 Rmu_ssc0000024.1_g000047
rosa_roxburghii Rroxscaffold_3G00267850
rosa_rugosa Rorug06G0476400
rosa_samantha Rh7AG064100 Rh7BG080600 Rh7CG083400 Rh7DG084300
rosa_wichuraiana Rw7G007230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 395
AccI GTMKAC 1 cut(s) 89
AciI CCGC 2 cut(s) 405, 438
AcoI YGGCCR 1 cut(s) 355
AcyI GRCGYC 1 cut(s) 239
AfaI GTAC 4 cut(s) 206, 284, 364, 371
AgsI TTSAA 4 cut(s) 178, 233, 253, 310
AluBI AGCT 2 cut(s) 258, 379
AluI AGCT 2 cut(s) 258, 379
Alw26I GTCTC 2 cut(s) 391, 429
AoxI GGCC 3 cut(s) 158, 355, 417
ApeKI GCWGC 2 cut(s) 258, 536
AspLEI GCGC 1 cut(s) 554
AspS9I GGNCC 2 cut(s) 159, 471
AsuC2I CCSGG 1 cut(s) 354
AsuHPI GGTGA 3 cut(s) 61, 197, 307
AvaII GGWCC 1 cut(s) 471
BanI GGYRCC 1 cut(s) 395
BbsI GAAGAC 2 cut(s) 225, 423
BbvI GCAGC 2 cut(s) 245, 523
BccI CCATC 1 cut(s) 22
BceAI ACGGC 1 cut(s) 310
BcnI CCSGG 1 cut(s) 354
BcoDI GTCTC 2 cut(s) 391, 429
BfaI CTAG 1 cut(s) 383
BisI GCNGC 3 cut(s) 259, 438, 537
BlsI GCNGC 3 cut(s) 260, 439, 538
Bme1390I CCNGG 1 cut(s) 354
Bme18I GGWCC 1 cut(s) 471
BmgT120I GGNCC 2 cut(s) 159, 471
BmiI GGNNCC 3 cut(s) 328, 397, 472
BmrFI CCNGG 1 cut(s) 354
BmsI GCATC 2 cut(s) 127, 135
BpiI GAAGAC 2 cut(s) 225, 423
BpuMI CCSGG 1 cut(s) 354
BsaHI GRCGYC 1 cut(s) 239
BsaJI CCNNGG 1 cut(s) 352
BseDI CCNNGG 1 cut(s) 352
BseGI GGATG 1 cut(s) 126
BseMII CTCAG 1 cut(s) 500
BseRI GAGGAG 1 cut(s) 496
BseXI GCAGC 2 cut(s) 245, 523
BshFI GGCC 3 cut(s) 160, 357, 419
BshNI GGYRCC 1 cut(s) 395
BsiSI CCGG 1 cut(s) 354
BslFI GGGAC 2 cut(s) 78, 122
BsmAI GTCTC 2 cut(s) 391, 429
BsmFI GGGAC 2 cut(s) 78, 122
BsnI GGCC 3 cut(s) 160, 357, 419
Bsp1407I TGTACA 1 cut(s) 282
Bsp143I GATC 1 cut(s) 180
BspACI CCGC 2 cut(s) 405, 438
BspANI GGCC 3 cut(s) 160, 357, 419
BspCNI CTCAG 1 cut(s) 499
BspLI GGNNCC 3 cut(s) 328, 397, 472
BspT107I GGYRCC 1 cut(s) 395
BsrGI TGTACA 1 cut(s) 282
BssECI CCNNGG 1 cut(s) 352
BssMI GATC 1 cut(s) 180
BssNI GRCGYC 1 cut(s) 239
Bst4CI ACNGT 2 cut(s) 362, 532
Bst6I CTCTTC 1 cut(s) 311
BstACI GRCGYC 1 cut(s) 239
BstAUI TGTACA 1 cut(s) 282
BstC8I GCNNGC 2 cut(s) 546, 550
BstDEI CTNAG 1 cut(s) 486
BstF5I GGATG 1 cut(s) 126
BstHHI GCGC 1 cut(s) 554
BstKTI GATC 1 cut(s) 183
BstMAI GTCTC 2 cut(s) 391, 429
BstMBI GATC 1 cut(s) 180
BstMWI GCNNNNNNNGC 2 cut(s) 443, 545
BstSCI CCNGG 1 cut(s) 352
BstV1I GCAGC 2 cut(s) 245, 523
BstV2I GAAGAC 2 cut(s) 225, 423
BsuRI GGCC 3 cut(s) 160, 357, 419
BtsCI GGATG 1 cut(s) 126
BtsIMutI CAGTG 3 cut(s) 224, 358, 528
Cac8I GCNNGC 2 cut(s) 546, 550
CfoI GCGC 1 cut(s) 554
Cfr13I GGNCC 2 cut(s) 159, 471
CseI GACGC 3 cut(s) 125, 247, 452
Csp6I GTAC 4 cut(s) 205, 283, 363, 370
CviAII CATG 2 cut(s) 286, 571
CviJI RGCY 6 cut(s) 160, 258, 357, 379, 419, 548
CviKI_1 RGCY 6 cut(s) 160, 258, 357, 379, 419, 548
CviQI GTAC 4 cut(s) 205, 283, 363, 370
DdeI CTNAG 1 cut(s) 486
DpnI GATC 1 cut(s) 182
DpnII GATC 1 cut(s) 180
EaeI YGGCCR 1 cut(s) 355
Eam1104I CTCTTC 1 cut(s) 311
EarI CTCTTC 1 cut(s) 311
EciI GGCGGA 1 cut(s) 394
Eco147I AGGCCT 1 cut(s) 419
Eco47I GGWCC 1 cut(s) 471
FaeI CATG 2 cut(s) 289, 574
FaiI YATR 4 cut(s) 97, 287, 334, 572
FaqI GGGAC 2 cut(s) 78, 122
FatI CATG 2 cut(s) 285, 570
FblI GTMKAC 1 cut(s) 89
Fnu4HI GCNGC 3 cut(s) 259, 438, 537
FokI GGATG 1 cut(s) 113
Fsp4HI GCNGC 3 cut(s) 259, 438, 537
FspBI CTAG 1 cut(s) 383
GlaI GCGC 1 cut(s) 553
GluI GCNGC 3 cut(s) 259, 438, 537
HaeIII GGCC 3 cut(s) 160, 357, 419
HapII CCGG 1 cut(s) 354
HgaI GACGC 3 cut(s) 125, 247, 452
HhaI GCGC 1 cut(s) 554
Hin1I GRCGYC 1 cut(s) 239
Hin1II CATG 2 cut(s) 289, 574
Hin6I GCGC 1 cut(s) 552
HinP1I GCGC 1 cut(s) 552
HincII GTYRAC 1 cut(s) 90
HindII GTYRAC 1 cut(s) 90
HinfI GANTC 4 cut(s) 91, 188, 221, 229
HpaII CCGG 1 cut(s) 354
HphI GGTGA 3 cut(s) 61, 197, 307
Hpy166II GTNNAC 1 cut(s) 90
Hpy188I TCNGA 1 cut(s) 489
Hpy188III TCNNGA 2 cut(s) 178, 253
Hpy8I GTNNAC 1 cut(s) 90
Hpy99I CGWCG 5 cut(s) 91, 296, 395, 446, 563
HpyAV CCTTC 1 cut(s) 475
HpyCH4III ACNGT 2 cut(s) 362, 532
HpyCH4V TGCA 3 cut(s) 261, 347, 566
HpyF10VI GCNNNNNNNGC 2 cut(s) 443, 545
HpyF3I CTNAG 1 cut(s) 486
Hsp92I GRCGYC 1 cut(s) 239
Hsp92II CATG 2 cut(s) 289, 574
HspAI GCGC 1 cut(s) 552
Kzo9I GATC 1 cut(s) 180
LmnI GCTCC 2 cut(s) 384, 451
LpnPI CCDG 4 cut(s) 32, 367, 386, 530
Lsp1109I GCAGC 2 cut(s) 245, 523
LweI GCATC 2 cut(s) 127, 135
MaeI CTAG 1 cut(s) 383
MaeIII GTNAC 2 cut(s) 185, 235
MalI GATC 1 cut(s) 182
MboI GATC 1 cut(s) 180
MboII GAAGA 3 cut(s) 230, 298, 423
MfeI CAATTG 1 cut(s) 132
MluCI AATT 2 cut(s) 132, 247
MlyI GAGTC 3 cut(s) 85, 182, 215
MnlI CCTC 8 cut(s) 203, 253, 323, 409, 460, 489, 514, 517
MspI CCGG 1 cut(s) 354
MspR9I CCNGG 1 cut(s) 354
MunI CAATTG 1 cut(s) 132
MwoI GCNNNNNNNGC 2 cut(s) 443, 545
NciI CCSGG 1 cut(s) 354
NdeII GATC 1 cut(s) 180
NlaIII CATG 2 cut(s) 289, 574
NlaIV GGNNCC 3 cut(s) 328, 397, 472
NmuCI GTSAC 2 cut(s) 185, 235
PceI AGGCCT 1 cut(s) 419
PfeI GAWTC 1 cut(s) 229
PkrI GCNGC 3 cut(s) 260, 439, 538
PleI GAGTC 3 cut(s) 85, 182, 215
PpsI GAGTC 3 cut(s) 85, 182, 215
PspN4I GGNNCC 3 cut(s) 328, 397, 472
PspPI GGNCC 2 cut(s) 159, 471
RsaI GTAC 4 cut(s) 206, 284, 364, 371
RsaNI GTAC 4 cut(s) 205, 283, 363, 370
SalI GTCGAC 1 cut(s) 88
SatI GCNGC 3 cut(s) 259, 438, 537
Sau3AI GATC 1 cut(s) 180
Sau96I GGNCC 2 cut(s) 159, 471
SchI GAGTC 3 cut(s) 85, 182, 215
ScrFI CCNGG 1 cut(s) 354
SetI ASST 5 cut(s) 51, 260, 315, 381, 401
SfaNI GCATC 2 cut(s) 127, 135
SinI GGWCC 1 cut(s) 471
Sse9I AATT 2 cut(s) 132, 247
SseBI AGGCCT 1 cut(s) 419
SsiI CCGC 2 cut(s) 405, 438
SspMI CTAG 1 cut(s) 383
StuI AGGCCT 1 cut(s) 419
StyD4I CCNGG 1 cut(s) 352
TaaI ACNGT 2 cut(s) 362, 532
TaqI TCGA 1 cut(s) 89
TasI AATT 2 cut(s) 132, 247
TatI WGTACW 1 cut(s) 282
TauI GCSGC 1 cut(s) 440
TfiI GAWTC 1 cut(s) 229
TscAI CASTG 3 cut(s) 231, 365, 535
TseFI GTSAC 2 cut(s) 185, 235
TseI GCWGC 2 cut(s) 258, 536
Tsp45I GTSAC 2 cut(s) 185, 235
TspDTI ATGAA 1 cut(s) 302
TspGWI ACGGA 3 cut(s) 339, 379, 417
TspRI CASTG 3 cut(s) 231, 365, 535
VpaK11BI GGWCC 1 cut(s) 471
XmiI GTMKAC 1 cut(s) 89
XspI CTAG 1 cut(s) 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.