RLG00000004818

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0012109
Physical Location & Seq
Forward (+)
62781724 .. 62782389
666 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004818

Sequence Viewer

Length: 579 bp
ATGGCCAATCTTACAAGTAGTCCAAGGTACCAGTTCTTATTGGCTTTGCAGCTCCTTCTGTTGGTGCAATCCAGAGTCGGGTGCTATCAGTACAAAGTTGGAGATCTAGATGCTTGGGGAATACCCACTTCAGCAAACCCACAAGTCTACACCAAATGGTCAAAATACCATGAATTCAAGATTGGAGATTCTCTCTTGTTCTTGTACCCACCCAGCCAAGACTCAGTGATTCAAGTCACAGAGCAATCCTACAAGGACTGCAACCTCAAAGATCCATTCTTGTACATGAACAATGGCAACTCTCTCTTTAATTTTACTGCAGAAGGAGTGTTCTACTTCACAAGTGGAGAACCTGGTAACTGTGAAAAGGGCCAGAAGCTCTACGTTGCTACAGGGAATGGCACTGCTTACTCTCCTGCATATGGTCCAAGTGGATTGCCGGATTCTGCTCCGTCTTACACCAATGTTTTCGGCGCAATTCCGGCACCGCCTTCTTCTTCACCATCACAAAGTGTTCCACTTCTGATAATGGCTGTGATTGGTTTTGTGGTATGTGCATTACTCAATGGCAATTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

193

Amino Acids

20.87

Weight (kDa)

5.23

Isoelectric Point (pI)

42.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 46 - 125 1.6e-19 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012109)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64640
fragaria_vesca FvH4_5g11040
malus_domestica MD06G1117200.v1.1 MD14G1124500.v1.1
prunus_persica Prupe.5G128300_v2.0.a1
pyrus_communis pycom06g10910 pycom14g11030
rosa_chinensis RchiOBHm_Chr7g0186761
rosa_laevigata RLG00000004818
rosa_multiflora Rmu_co8398473.1_g000001 Rmu_sc0009734.1_g000003 Rmu_ssc0000024.1_g000047
rosa_roxburghii Rroxscaffold_3G00267850
rosa_rugosa Rorug06G0476400
rosa_samantha Rh7AG064100 Rh7BG080600 Rh7CG083400 Rh7DG084300
rosa_wichuraiana Rw7G007230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 27
AccB1I GGYRCC 2 cut(s) 27, 484
AccI GTMKAC 1 cut(s) 147
AciI CCGC 1 cut(s) 488
AclWI GGATC 1 cut(s) 266
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 173
AcuI CTGAAG 1 cut(s) 114
AdeI CACNNNGTG 1 cut(s) 512
AfaI GTAC 4 cut(s) 29, 92, 206, 284
AfiI CCNNNNNNNGG 3 cut(s) 61, 78, 422
AgsI TTSAA 2 cut(s) 178, 233
AjnI CCWGG 1 cut(s) 352
AjuI GAANNNNNNNTTGG 2 cut(s) 165, 197
AluBI AGCT 2 cut(s) 52, 379
AluI AGCT 2 cut(s) 52, 379
AlwI GGATC 1 cut(s) 266
AoxI GGCC 2 cut(s) 3, 370
ApeKI GCWGC 1 cut(s) 49
ApoI RAATTY 1 cut(s) 173
Asp718I GGTACC 1 cut(s) 27
AspLEI GCGC 1 cut(s) 476
AspS9I GGNCC 2 cut(s) 370, 425
AsuHPI GGTGA 1 cut(s) 492
AvaII GGWCC 1 cut(s) 425
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 2 cut(s) 27, 484
BbvI GCAGC 1 cut(s) 61
BccI CCATC 1 cut(s) 511
BciT130I CCWGG 1 cut(s) 354
BfaI CTAG 1 cut(s) 107
BfmI CTRYAG 2 cut(s) 318, 390
BglII AGATCT 1 cut(s) 103
BisI GCNGC 1 cut(s) 50
BlsI GCNGC 1 cut(s) 51
Bme1390I CCNGG 1 cut(s) 354
Bme18I GGWCC 1 cut(s) 425
BmgT120I GGNCC 2 cut(s) 370, 425
BmiI GGNNCC 2 cut(s) 29, 486
BmrFI CCNGG 1 cut(s) 354
BmsI GCATC 1 cut(s) 100
BplI GAGNNNNNCTC 2 cut(s) 177, 209
BsaJI CCNNGG 1 cut(s) 23
Bsc4I CCNNNNNNNGG 3 cut(s) 61, 78, 422
Bse1I ACTGG 1 cut(s) 31
BseBI CCWGG 1 cut(s) 354
BseDI CCNNGG 1 cut(s) 23
BseLI CCNNNNNNNGG 3 cut(s) 61, 78, 422
BseMII CTCAG 1 cut(s) 237
BseNI ACTGG 1 cut(s) 31
BseXI GCAGC 1 cut(s) 61
BseYI CCCAGC 1 cut(s) 212
BshFI GGCC 2 cut(s) 5, 372
BshNI GGYRCC 2 cut(s) 27, 484
BsiSI CCGG 2 cut(s) 440, 482
BslI CCNNNNNNNGG 3 cut(s) 61, 78, 422
BsnI GGCC 2 cut(s) 5, 372
Bsp1407I TGTACA 1 cut(s) 282
Bsp143I GATC 2 cut(s) 103, 271
BspACI CCGC 1 cut(s) 488
BspANI GGCC 2 cut(s) 5, 372
BspCNI CTCAG 1 cut(s) 236
BspLI GGNNCC 2 cut(s) 29, 486
BspMAI CTGCAG 1 cut(s) 322
BspPI GGATC 1 cut(s) 266
BspT107I GGYRCC 2 cut(s) 27, 484
BsrGI TGTACA 1 cut(s) 282
BsrI ACTGG 1 cut(s) 31
BssECI CCNNGG 1 cut(s) 23
BssMI GATC 2 cut(s) 103, 271
BssT1I CCWWGG 1 cut(s) 23
Bst2UI CCWGG 1 cut(s) 354
Bst4CI ACNGT 1 cut(s) 362
BstAUI TGTACA 1 cut(s) 282
BstDEI CTNAG 1 cut(s) 223
BstHHI GCGC 1 cut(s) 476
BstKTI GATC 2 cut(s) 106, 274
BstMBI GATC 2 cut(s) 103, 271
BstMWI GCNNNNNNNGC 1 cut(s) 482
BstNI CCWGG 1 cut(s) 354
BstSCI CCNGG 1 cut(s) 352
BstSFI CTRYAG 2 cut(s) 318, 390
BstV1I GCAGC 1 cut(s) 61
BstX2I RGATCY 2 cut(s) 103, 271
BstYI RGATCY 2 cut(s) 103, 271
BsuRI GGCC 2 cut(s) 5, 372
BtsI GCAGTG 1 cut(s) 402
BtsIMutI CAGTG 2 cut(s) 231, 402
CfoI GCGC 1 cut(s) 476
Cfr13I GGNCC 2 cut(s) 370, 425
CsiI ACCWGGT 1 cut(s) 352
Csp6I GTAC 4 cut(s) 28, 91, 205, 283
CviAII CATG 2 cut(s) 170, 286
CviJI RGCY 7 cut(s) 5, 44, 52, 216, 372, 379, 533
CviKI_1 RGCY 7 cut(s) 5, 44, 52, 216, 372, 379, 533
CviQI GTAC 4 cut(s) 28, 91, 205, 283
DdeI CTNAG 1 cut(s) 223
DpnI GATC 2 cut(s) 105, 273
DpnII GATC 2 cut(s) 103, 271
DraIII CACNNNGTG 1 cut(s) 512
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 23
Eco47I GGWCC 1 cut(s) 425
Eco57I CTGAAG 1 cut(s) 114
EcoRI GAATTC 1 cut(s) 173
EcoRII CCWGG 1 cut(s) 352
EcoT14I CCWWGG 1 cut(s) 23
ErhI CCWWGG 1 cut(s) 23
FaeI CATG 2 cut(s) 173, 289
FaiI YATR 6 cut(s) 171, 287, 421, 423, 553, 577
FatI CATG 2 cut(s) 169, 285
FauNDI CATATG 1 cut(s) 421
FblI GTMKAC 1 cut(s) 147
Fnu4HI GCNGC 1 cut(s) 50
Fsp4HI GCNGC 1 cut(s) 50
FspBI CTAG 1 cut(s) 107
GlaI GCGC 1 cut(s) 475
GluI GCNGC 1 cut(s) 50
GsaI CCCAGC 1 cut(s) 216
HaeIII GGCC 2 cut(s) 5, 372
HapII CCGG 2 cut(s) 440, 482
HhaI GCGC 1 cut(s) 476
Hin1II CATG 2 cut(s) 173, 289
Hin6I GCGC 1 cut(s) 474
HinP1I GCGC 1 cut(s) 474
HinfI GANTC 5 cut(s) 75, 188, 221, 229, 443
HpaII CCGG 2 cut(s) 440, 482
HphI GGTGA 1 cut(s) 492
Hpy166II GTNNAC 1 cut(s) 148
Hpy188I TCNGA 1 cut(s) 525
Hpy188III TCNNGA 3 cut(s) 72, 107, 178
Hpy8I GTNNAC 1 cut(s) 148
HpyAV CCTTC 3 cut(s) 65, 317, 501
HpyCH4III ACNGT 1 cut(s) 362
HpyCH4IV ACGT 1 cut(s) 384
HpyCH4V TGCA 6 cut(s) 49, 67, 261, 320, 419, 557
HpyF10VI GCNNNNNNNGC 1 cut(s) 482
HpyF3I CTNAG 1 cut(s) 223
HpySE526I ACGT 1 cut(s) 384
Hsp92II CATG 2 cut(s) 173, 289
HspAI GCGC 1 cut(s) 474
KpnI GGTACC 1 cut(s) 31
Kzo9I GATC 2 cut(s) 103, 271
LmnI GCTCC 2 cut(s) 57, 454
Lsp1109I GCAGC 1 cut(s) 61
LweI GCATC 1 cut(s) 100
MabI ACCWGGT 1 cut(s) 352
MaeI CTAG 1 cut(s) 107
MaeII ACGT 1 cut(s) 384
MaeIII GTNAC 2 cut(s) 235, 356
MalI GATC 2 cut(s) 105, 273
MboI GATC 2 cut(s) 103, 271
MboII GAAGA 2 cut(s) 486, 489
MflI RGATCY 2 cut(s) 103, 271
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 173, 310, 477, 571
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 84, 215
MmeI TCCRAC 1 cut(s) 79
MnlI CCTC 1 cut(s) 275
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 309
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 440, 482
MspR9I CCNGG 1 cut(s) 354
MvaI CCWGG 1 cut(s) 354
MwoI GCNNNNNNNGC 1 cut(s) 482
NdeI CATATG 1 cut(s) 421
NdeII GATC 2 cut(s) 103, 271
NlaIII CATG 2 cut(s) 173, 289
NlaIV GGNNCC 2 cut(s) 29, 486
NmuCI GTSAC 1 cut(s) 235
PfeI GAWTC 3 cut(s) 188, 229, 443
PkrI GCNGC 1 cut(s) 51
PleI GAGTC 2 cut(s) 83, 215
PpsI GAGTC 2 cut(s) 83, 215
Psp6I CCWGG 1 cut(s) 352
PspFI CCCAGC 1 cut(s) 212
PspGI CCWGG 1 cut(s) 352
PspN4I GGNNCC 2 cut(s) 29, 486
PspPI GGNCC 2 cut(s) 370, 425
PstI CTGCAG 1 cut(s) 322
PsuI RGATCY 2 cut(s) 103, 271
RsaI GTAC 4 cut(s) 29, 92, 206, 284
RsaNI GTAC 4 cut(s) 28, 91, 205, 283
SaqAI TTAA 1 cut(s) 309
SatI GCNGC 1 cut(s) 50
Sau3AI GATC 2 cut(s) 103, 271
Sau96I GGNCC 2 cut(s) 370, 425
SchI GAGTC 2 cut(s) 84, 215
ScrFI CCNGG 1 cut(s) 354
SetI ASST 6 cut(s) 29, 54, 267, 355, 381, 387
SexAI ACCWGGT 1 cut(s) 352
SfaNI GCATC 1 cut(s) 100
SfcI CTRYAG 2 cut(s) 318, 390
SinI GGWCC 1 cut(s) 425
Sse9I AATT 4 cut(s) 173, 310, 477, 571
SsiI CCGC 1 cut(s) 488
SspMI CTAG 1 cut(s) 107
StyD4I CCNGG 1 cut(s) 352
StyI CCWWGG 1 cut(s) 23
TaaI ACNGT 1 cut(s) 362
TaiI ACGT 1 cut(s) 387
TasI AATT 4 cut(s) 173, 310, 477, 571
TatI WGTACW 2 cut(s) 90, 282
TfiI GAWTC 3 cut(s) 188, 229, 443
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TscAI CASTG 2 cut(s) 231, 409
TseFI GTSAC 1 cut(s) 235
TseI GCWGC 1 cut(s) 49
Tsp45I GTSAC 1 cut(s) 235
TspDTI ATGAA 2 cut(s) 186, 302
TspGWI ACGGA 1 cut(s) 441
TspRI CASTG 2 cut(s) 231, 409
VpaK11BI GGWCC 1 cut(s) 425
XapI RAATTY 1 cut(s) 173
XbaI TCTAGA 1 cut(s) 106
XmiI GTMKAC 1 cut(s) 147
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.