FvH4_5g11040

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0012109
Physical Location & Seq
Forward (+)
6234001 .. 6235473
1473 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g11040.t1

Sequence Viewer

Length: 567 bp
ATGGCTAATCTTACTCCAAGATACCAGTTCTTGTTGGCTTTGCAGTTCCTTCTGTTAGTCAGAGTTTGGTGCTACCAGTACAAAGTTGGAGATCTAGATGCTTGGGGAATACCAACTTCAGCAAATCCACAAGTCTACACCAAATGGTCAAAATACCATTCTTTCAAGAGTGGAGATTCTCTCTTGTTCTTGTACCCACCAAGCCAAGACTCAATGATTCAAGTCACTGAGCAATCCTACAAGGACTGCAACCTCAAAGATCCGATCTTGTACATGAACAATGGCAACTCTCTCTTTAATGTTACTACAGAAGGAGTTTTTTACTTCACAAGTGGAGAGCCTGGCCACTGTGGGAAGGGCCAGAAGCTCTACATTGCTACAGGGAATGGCACTGCTTACTCTCCTGCATATGGTCCAAGTTCGCCGGATTCTGCCCCGTCTTACCCCACCGTTTTCGGCTCAATTCCGGCACCGCCTTCTTCTTCTTCACCATCACAAAGCGTTCCACTTCTCATAATGGCCATTACTGGACTTTTGGTATGTGCATTACTCAGTGGCAATCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

189

Amino Acids

20.47

Weight (kDa)

6.69

Isoelectric Point (pI)

44.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 42 - 121 1.4e-18 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012109)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64640
fragaria_vesca FvH4_5g11040
malus_domestica MD06G1117200.v1.1 MD14G1124500.v1.1
prunus_persica Prupe.5G128300_v2.0.a1
pyrus_communis pycom06g10910 pycom14g11030
rosa_chinensis RchiOBHm_Chr7g0186761
rosa_laevigata RLG00000004818
rosa_multiflora Rmu_co8398473.1_g000001 Rmu_sc0009734.1_g000003 Rmu_ssc0000024.1_g000047
rosa_roxburghii Rroxscaffold_3G00267850
rosa_rugosa Rorug06G0476400
rosa_samantha Rh7AG064100 Rh7BG080600 Rh7CG083400 Rh7DG084300
rosa_wichuraiana Rw7G007230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 469
AccI GTMKAC 1 cut(s) 135
AciI CCGC 1 cut(s) 473
AclWI GGATC 1 cut(s) 254
AcoI YGGCCR 2 cut(s) 343, 519
AcuI CTGAAG 1 cut(s) 102
AfaI GTAC 3 cut(s) 80, 194, 272
AfiI CCNNNNNNNGG 1 cut(s) 410
AgsI TTSAA 2 cut(s) 166, 221
AjnI CCWGG 1 cut(s) 340
AluBI AGCT 1 cut(s) 367
AluI AGCT 1 cut(s) 367
AlwI GGATC 1 cut(s) 254
AoxI GGCC 3 cut(s) 343, 358, 519
AspS9I GGNCC 2 cut(s) 358, 413
AsuHPI GGTGA 1 cut(s) 480
AvaII GGWCC 1 cut(s) 413
BalI TGGCCA 2 cut(s) 345, 521
BanI GGYRCC 1 cut(s) 469
BccI CCATC 1 cut(s) 499
BciT130I CCWGG 1 cut(s) 342
BfaI CTAG 1 cut(s) 95
BfmI CTRYAG 2 cut(s) 306, 378
BglII AGATCT 1 cut(s) 91
Bme1390I CCNGG 1 cut(s) 342
Bme18I GGWCC 1 cut(s) 413
BmgT120I GGNCC 2 cut(s) 358, 413
BmiI GGNNCC 1 cut(s) 471
BmrFI CCNGG 1 cut(s) 342
BmsI GCATC 1 cut(s) 88
BplI GAGNNNNNCTC 2 cut(s) 165, 197
Bsc4I CCNNNNNNNGG 1 cut(s) 410
Bse1I ACTGG 3 cut(s) 25, 76, 532
Bse3DI GCAATG 1 cut(s) 372
BseBI CCWGG 1 cut(s) 342
BseLI CCNNNNNNNGG 1 cut(s) 410
BseMI GCAATG 1 cut(s) 372
BseMII CTCAG 2 cut(s) 219, 565
BseNI ACTGG 3 cut(s) 25, 76, 532
BshFI GGCC 3 cut(s) 345, 360, 521
BshNI GGYRCC 1 cut(s) 469
BsiSI CCGG 2 cut(s) 425, 467
BslI CCNNNNNNNGG 1 cut(s) 410
BsnI GGCC 3 cut(s) 345, 360, 521
Bsp1407I TGTACA 1 cut(s) 270
Bsp143I GATC 3 cut(s) 91, 259, 264
BspACI CCGC 1 cut(s) 473
BspANI GGCC 3 cut(s) 345, 360, 521
BspCNI CTCAG 2 cut(s) 220, 564
BspLI GGNNCC 1 cut(s) 471
BspPI GGATC 1 cut(s) 254
BspT107I GGYRCC 1 cut(s) 469
BsrDI GCAATG 1 cut(s) 372
BsrGI TGTACA 1 cut(s) 270
BsrI ACTGG 3 cut(s) 25, 76, 532
BssMI GATC 3 cut(s) 91, 259, 264
Bst2UI CCWGG 1 cut(s) 342
Bst4CI ACNGT 2 cut(s) 350, 451
BstAUI TGTACA 1 cut(s) 270
BstDEI CTNAG 2 cut(s) 228, 551
BstKTI GATC 3 cut(s) 94, 262, 267
BstMBI GATC 3 cut(s) 91, 259, 264
BstNI CCWGG 1 cut(s) 342
BstSCI CCNGG 1 cut(s) 340
BstSFI CTRYAG 2 cut(s) 306, 378
BstX2I RGATCY 2 cut(s) 91, 259
BstYI RGATCY 2 cut(s) 91, 259
BsuRI GGCC 3 cut(s) 345, 360, 521
BtsI GCAGTG 1 cut(s) 390
BtsIMutI CAGTG 4 cut(s) 225, 346, 390, 559
Cfr13I GGNCC 2 cut(s) 358, 413
Csp6I GTAC 3 cut(s) 79, 193, 271
CviAII CATG 1 cut(s) 274
CviJI RGCY 9 cut(s) 5, 38, 204, 340, 345, 360, 367, 459, 521
CviKI_1 RGCY 9 cut(s) 5, 38, 204, 340, 345, 360, 367, 459, 521
CviQI GTAC 3 cut(s) 79, 193, 271
DdeI CTNAG 2 cut(s) 228, 551
DpnI GATC 3 cut(s) 93, 261, 266
DpnII GATC 3 cut(s) 91, 259, 264
EaeI YGGCCR 2 cut(s) 343, 519
Eco47I GGWCC 1 cut(s) 413
Eco57I CTGAAG 1 cut(s) 102
EcoRII CCWGG 1 cut(s) 340
FaeI CATG 1 cut(s) 277
FaiI YATR 5 cut(s) 275, 409, 411, 515, 541
FatI CATG 1 cut(s) 273
FauNDI CATATG 1 cut(s) 409
FblI GTMKAC 1 cut(s) 135
FspBI CTAG 1 cut(s) 95
HaeIII GGCC 3 cut(s) 345, 360, 521
HapII CCGG 2 cut(s) 425, 467
Hin1II CATG 1 cut(s) 277
HinfI GANTC 4 cut(s) 176, 209, 217, 428
HpaII CCGG 2 cut(s) 425, 467
HphI GGTGA 1 cut(s) 480
Hpy166II GTNNAC 1 cut(s) 136
Hpy188I TCNGA 2 cut(s) 62, 264
Hpy188III TCNNGA 2 cut(s) 95, 166
Hpy8I GTNNAC 1 cut(s) 136
HpyAV CCTTC 4 cut(s) 59, 305, 349, 486
HpyCH4III ACNGT 2 cut(s) 350, 451
HpyCH4V TGCA 4 cut(s) 43, 249, 407, 545
HpyF3I CTNAG 2 cut(s) 228, 551
Hsp92II CATG 1 cut(s) 277
Kzo9I GATC 3 cut(s) 91, 259, 264
LweI GCATC 1 cut(s) 88
MaeI CTAG 1 cut(s) 95
MaeIII GTNAC 2 cut(s) 223, 301
MalI GATC 3 cut(s) 93, 261, 266
MboI GATC 3 cut(s) 91, 259, 264
MboII GAAGA 3 cut(s) 471, 474, 477
MflI RGATCY 2 cut(s) 91, 259
MlsI TGGCCA 2 cut(s) 345, 521
MluCI AATT 1 cut(s) 462
MluNI TGGCCA 2 cut(s) 345, 521
MlyI GAGTC 1 cut(s) 203
MmeI TCCRAC 1 cut(s) 67
MnlI CCTC 1 cut(s) 263
Mox20I TGGCCA 2 cut(s) 345, 521
MscI TGGCCA 2 cut(s) 345, 521
MseI TTAA 1 cut(s) 297
Msp20I TGGCCA 2 cut(s) 345, 521
MspI CCGG 2 cut(s) 425, 467
MspR9I CCNGG 1 cut(s) 342
MvaI CCWGG 1 cut(s) 342
NdeI CATATG 1 cut(s) 409
NdeII GATC 3 cut(s) 91, 259, 264
NlaIII CATG 1 cut(s) 277
NlaIV GGNNCC 1 cut(s) 471
NmuCI GTSAC 1 cut(s) 223
PfeI GAWTC 3 cut(s) 176, 217, 428
PleI GAGTC 1 cut(s) 203
PpsI GAGTC 1 cut(s) 203
Psp6I CCWGG 1 cut(s) 340
PspGI CCWGG 1 cut(s) 340
PspN4I GGNNCC 1 cut(s) 471
PspPI GGNCC 2 cut(s) 358, 413
PsuI RGATCY 2 cut(s) 91, 259
RsaI GTAC 3 cut(s) 80, 194, 272
RsaNI GTAC 3 cut(s) 79, 193, 271
SaqAI TTAA 1 cut(s) 297
Sau3AI GATC 3 cut(s) 91, 259, 264
Sau96I GGNCC 2 cut(s) 358, 413
SchI GAGTC 1 cut(s) 203
ScrFI CCNGG 1 cut(s) 342
SetI ASST 2 cut(s) 255, 369
SfaNI GCATC 1 cut(s) 88
SfcI CTRYAG 2 cut(s) 306, 378
SinI GGWCC 1 cut(s) 413
Sse9I AATT 1 cut(s) 462
SsiI CCGC 1 cut(s) 473
SspMI CTAG 1 cut(s) 95
StyD4I CCNGG 1 cut(s) 340
TaaI ACNGT 2 cut(s) 350, 451
TasI AATT 1 cut(s) 462
TatI WGTACW 2 cut(s) 78, 270
TfiI GAWTC 3 cut(s) 176, 217, 428
Tru1I TTAA 1 cut(s) 297
Tru9I TTAA 1 cut(s) 297
TscAI CASTG 4 cut(s) 232, 353, 397, 559
TseFI GTSAC 1 cut(s) 223
Tsp45I GTSAC 1 cut(s) 223
TspDTI ATGAA 1 cut(s) 290
TspRI CASTG 4 cut(s) 232, 353, 397, 559
VpaK11BI GGWCC 1 cut(s) 413
XbaI TCTAGA 1 cut(s) 94
XcmI CCANNNNNNNNNTGG 1 cut(s) 83
XmiI GTMKAC 1 cut(s) 135
XspI CTAG 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.