MD06G1117200.v1.1

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0012109
Physical Location & Seq
Reverse (-)
25629495 .. 25630728
1234 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1117200.v1.1.491

Sequence Viewer

Length: 591 bp
ATGGCCAACCTCAGAACTCCAAGATTGCACTTCCTTTTGGCTCTGCAGTTCCTCATGTTAATTCAGTCCCAAGTGCTCTGCTACCAGTACAAAGTAGGAGATCTAGATTCTTGGGGAATACCAACTTCTGCAAATCCACAGGTCTACACCAAATGGTCAAAACACCATCAATTCAAGCTTGGAGATTCTCTTTTGTTTTTGTACCCACCAAGCCAAGACTCGGTGATTCAAGTGACAGCACAATCCTACAGCAGCTGCAACCTCAAAGATCCAATCTTGTACATGAACGACGGCAACTCTCTCTTCAATTTCACCACATTGGGGGATTTCTACTTCACCAGCGGCGAACCGGGCCATTGCGAAAAGAGCCAGAAGCTCCACATTTCCTTTCTGTCTGGCAATGGCTCTGCTGACTCTCCTTCCTCTGGCCCTAGTTCATTGGACGCTTCTGCTCCTTCTTACCCCACCGTCTTTGGCACCATCCCGGCTCCGCCTTCTTCTTCTTCTTCTTCTCCGTCACAAAGGTTTCCAGTTTTCGCAGCGGCCGTTGTTGGATTTGTGGTGTCTGCACTTTTCAGTGGCAATATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

197

Amino Acids

21.25

Weight (kDa)

6.48

Isoelectric Point (pI)

49.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 45 - 123 2.9e-19 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012109)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64640
fragaria_vesca FvH4_5g11040
malus_domestica MD06G1117200.v1.1 MD14G1124500.v1.1
prunus_persica Prupe.5G128300_v2.0.a1
pyrus_communis pycom06g10910 pycom14g11030
rosa_chinensis RchiOBHm_Chr7g0186761
rosa_laevigata RLG00000004818
rosa_multiflora Rmu_co8398473.1_g000001 Rmu_sc0009734.1_g000003 Rmu_ssc0000024.1_g000047
rosa_roxburghii Rroxscaffold_3G00267850
rosa_rugosa Rorug06G0476400
rosa_samantha Rh7AG064100 Rh7BG080600 Rh7CG083400 Rh7DG084300
rosa_wichuraiana Rw7G007230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 476
AccI GTMKAC 1 cut(s) 144
AciI CCGC 3 cut(s) 342, 491, 542
AclWI GGATC 1 cut(s) 263
AcoI YGGCCR 2 cut(s) 3, 543
AfaI GTAC 3 cut(s) 89, 203, 281
AfiI CCNNNNNNNGG 3 cut(s) 220, 321, 425
AgsI TTSAA 3 cut(s) 175, 230, 307
AluBI AGCT 3 cut(s) 178, 255, 376
AluI AGCT 3 cut(s) 178, 255, 376
Alw21I GWGCWC 1 cut(s) 78
AlwI GGATC 1 cut(s) 263
AlwNI CAGNNNCTG 1 cut(s) 255
AoxI GGCC 4 cut(s) 3, 352, 427, 543
ApeKI GCWGC 3 cut(s) 252, 255, 539
AspS9I GGNCC 2 cut(s) 352, 428
AsuC2I CCSGG 2 cut(s) 351, 485
AsuHPI GGTGA 3 cut(s) 235, 304, 328
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 476
Bbv12I GWGCWC 1 cut(s) 78
BbvI GCAGC 3 cut(s) 242, 264, 551
BccI CCATC 2 cut(s) 174, 488
BceAI ACGGC 2 cut(s) 307, 530
BcnI CCSGG 2 cut(s) 351, 485
BfaI CTAG 2 cut(s) 104, 432
BfmI CTRYAG 2 cut(s) 44, 247
BglII AGATCT 1 cut(s) 100
BisI GCNGC 5 cut(s) 253, 256, 343, 540, 543
BlsI GCNGC 5 cut(s) 254, 257, 344, 541, 544
Bme1390I CCNGG 2 cut(s) 351, 485
BmgT120I GGNCC 2 cut(s) 352, 428
BmiI GGNNCC 2 cut(s) 478, 489
BmrFI CCNGG 2 cut(s) 351, 485
BpuMI CCSGG 2 cut(s) 351, 485
Bsc4I CCNNNNNNNGG 3 cut(s) 220, 321, 425
Bse1I ACTGG 2 cut(s) 85, 530
Bse3DI GCAATG 2 cut(s) 355, 406
BseGI GGATG 1 cut(s) 480
BseLI CCNNNNNNNGG 3 cut(s) 220, 321, 425
BseMI GCAATG 2 cut(s) 355, 406
BseMII CTCAG 1 cut(s) 25
BseNI ACTGG 2 cut(s) 85, 530
BseX3I CGGCCG 1 cut(s) 543
BseXI GCAGC 3 cut(s) 242, 264, 551
BsgI GTGCAG 1 cut(s) 552
Bsh1285I CGRYCG 1 cut(s) 546
BshFI GGCC 4 cut(s) 5, 354, 429, 545
BshNI GGYRCC 1 cut(s) 476
BsiEI CGRYCG 1 cut(s) 546
BsiHKAI GWGCWC 1 cut(s) 78
BsiSI CCGG 2 cut(s) 350, 485
BslFI GGGAC 1 cut(s) 52
BslI CCNNNNNNNGG 3 cut(s) 220, 321, 425
BsmFI GGGAC 1 cut(s) 52
BsnI GGCC 4 cut(s) 5, 354, 429, 545
Bsp1286I GDGCHC 1 cut(s) 78
Bsp1407I TGTACA 1 cut(s) 279
Bsp143I GATC 2 cut(s) 100, 268
BspACI CCGC 3 cut(s) 342, 491, 542
BspANI GGCC 4 cut(s) 5, 354, 429, 545
BspCNI CTCAG 1 cut(s) 24
BspLI GGNNCC 2 cut(s) 478, 489
BspMAI CTGCAG 1 cut(s) 48
BspPI GGATC 1 cut(s) 263
BspT107I GGYRCC 1 cut(s) 476
BsrDI GCAATG 2 cut(s) 355, 406
BsrGI TGTACA 1 cut(s) 279
BsrI ACTGG 2 cut(s) 85, 530
BssMI GATC 2 cut(s) 100, 268
Bst4CI ACNGT 1 cut(s) 469
Bst6I CTCTTC 1 cut(s) 308
BstAUI TGTACA 1 cut(s) 279
BstDEI CTNAG 1 cut(s) 11
BstF5I GGATG 1 cut(s) 480
BstKTI GATC 2 cut(s) 103, 271
BstMBI GATC 2 cut(s) 100, 268
BstMCI CGRYCG 1 cut(s) 546
BstMWI GCNNNNNNNGC 2 cut(s) 351, 366
BstSCI CCNGG 2 cut(s) 349, 483
BstSFI CTRYAG 2 cut(s) 44, 247
BstV1I GCAGC 3 cut(s) 242, 264, 551
BstX2I RGATCY 2 cut(s) 100, 268
BstYI RGATCY 2 cut(s) 100, 268
BstZI CGGCCG 1 cut(s) 543
BsuRI GGCC 4 cut(s) 5, 354, 429, 545
BtsCI GGATG 1 cut(s) 480
BtsIMutI CAGTG 1 cut(s) 583
CaiI CAGNNNCTG 1 cut(s) 255
Cfr13I GGNCC 2 cut(s) 352, 428
CseI GACGC 1 cut(s) 452
Csp6I GTAC 3 cut(s) 88, 202, 280
CspCI CAANNNNNGTGG 2 cut(s) 454, 489
CviAII CATG 2 cut(s) 55, 283
CviQI GTAC 3 cut(s) 88, 202, 280
DdeI CTNAG 1 cut(s) 11
DpnI GATC 2 cut(s) 102, 270
DpnII GATC 2 cut(s) 100, 268
EaeI YGGCCR 2 cut(s) 3, 543
EagI CGGCCG 1 cut(s) 543
Eam1104I CTCTTC 1 cut(s) 308
EarI CTCTTC 1 cut(s) 308
EciI GGCGGA 1 cut(s) 480
EclXI CGGCCG 1 cut(s) 543
Eco52I CGGCCG 1 cut(s) 543
FaeI CATG 2 cut(s) 58, 286
FaiI YATR 3 cut(s) 56, 284, 587
FaqI GGGAC 1 cut(s) 52
FatI CATG 2 cut(s) 54, 282
FblI GTMKAC 1 cut(s) 144
Fnu4HI GCNGC 5 cut(s) 253, 256, 343, 540, 543
FokI GGATG 1 cut(s) 467
Fsp4HI GCNGC 5 cut(s) 253, 256, 343, 540, 543
FspBI CTAG 2 cut(s) 104, 432
GluI GCNGC 5 cut(s) 253, 256, 343, 540, 543
HaeIII GGCC 4 cut(s) 5, 354, 429, 545
HapII CCGG 2 cut(s) 350, 485
HgaI GACGC 1 cut(s) 452
Hin1II CATG 2 cut(s) 58, 286
HindIII AAGCTT 1 cut(s) 176
HinfI GANTC 5 cut(s) 107, 185, 218, 226, 413
HpaII CCGG 2 cut(s) 350, 485
HphI GGTGA 3 cut(s) 235, 304, 328
Hpy166II GTNNAC 1 cut(s) 145
Hpy188I TCNGA 1 cut(s) 14
Hpy188III TCNNGA 1 cut(s) 104
Hpy8I GTNNAC 1 cut(s) 145
Hpy99I CGWCG 1 cut(s) 293
HpyAV CCTTC 3 cut(s) 429, 465, 504
HpyCH4III ACNGT 1 cut(s) 469
HpyCH4V TGCA 5 cut(s) 28, 46, 131, 258, 569
HpyF10VI GCNNNNNNNGC 2 cut(s) 351, 366
HpyF3I CTNAG 1 cut(s) 11
Hsp92II CATG 2 cut(s) 58, 286
Kzo9I GATC 2 cut(s) 100, 268
LmnI GCTCC 3 cut(s) 381, 457, 493
LpnPI CCDG 9 cut(s) 98, 125, 352, 363, 381, 383, 411, 498, 543
Lsp1109I GCAGC 3 cut(s) 242, 264, 551
MaeI CTAG 2 cut(s) 104, 432
MaeIII GTNAC 2 cut(s) 232, 516
MalI GATC 2 cut(s) 102, 270
MboI GATC 2 cut(s) 100, 268
MboII GAAGA 6 cut(s) 295, 489, 492, 495, 498, 501
MflI RGATCY 2 cut(s) 100, 268
MhlI GDGCHC 1 cut(s) 78
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 60, 170, 307
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 212, 407
MmeI TCCRAC 1 cut(s) 532
MnlI CCTC 4 cut(s) 20, 62, 272, 433
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 59
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 3 cut(s) 255, 342, 542
MspI CCGG 2 cut(s) 350, 485
MspR9I CCNGG 2 cut(s) 351, 485
MwoI GCNNNNNNNGC 2 cut(s) 351, 366
NciI CCSGG 2 cut(s) 351, 485
NdeII GATC 2 cut(s) 100, 268
NlaIII CATG 2 cut(s) 58, 286
NlaIV GGNNCC 2 cut(s) 478, 489
NmuCI GTSAC 2 cut(s) 232, 516
PcsI WCGNNNNNNNCGW 1 cut(s) 543
PfeI GAWTC 3 cut(s) 107, 185, 226
PkrI GCNGC 5 cut(s) 254, 257, 344, 541, 544
PleI GAGTC 2 cut(s) 212, 407
PpsI GAGTC 2 cut(s) 212, 407
PspN4I GGNNCC 2 cut(s) 478, 489
PspPI GGNCC 2 cut(s) 352, 428
PstI CTGCAG 1 cut(s) 48
PstNI CAGNNNCTG 1 cut(s) 255
PsuI RGATCY 2 cut(s) 100, 268
PvuII CAGCTG 1 cut(s) 255
RsaI GTAC 3 cut(s) 89, 203, 281
RsaNI GTAC 3 cut(s) 88, 202, 280
SaqAI TTAA 1 cut(s) 59
SatI GCNGC 5 cut(s) 253, 256, 343, 540, 543
Sau3AI GATC 2 cut(s) 100, 268
Sau96I GGNCC 2 cut(s) 352, 428
SchI GAGTC 2 cut(s) 212, 407
ScrFI CCNGG 2 cut(s) 351, 485
SduI GDGCHC 1 cut(s) 78
SetI ASST 7 cut(s) 12, 144, 180, 257, 264, 378, 527
SfcI CTRYAG 2 cut(s) 44, 247
Sse9I AATT 3 cut(s) 60, 170, 307
SsiI CCGC 3 cut(s) 342, 491, 542
SspMI CTAG 2 cut(s) 104, 432
StyD4I CCNGG 2 cut(s) 349, 483
TaaI ACNGT 1 cut(s) 469
TasI AATT 3 cut(s) 60, 170, 307
TatI WGTACW 2 cut(s) 87, 279
TauI GCSGC 2 cut(s) 345, 545
TfiI GAWTC 3 cut(s) 107, 185, 226
Tru1I TTAA 1 cut(s) 59
Tru9I TTAA 1 cut(s) 59
TscAI CASTG 1 cut(s) 583
TseFI GTSAC 2 cut(s) 232, 516
TseI GCWGC 3 cut(s) 252, 255, 539
Tsp45I GTSAC 2 cut(s) 232, 516
TspDTI ATGAA 2 cut(s) 299, 426
TspGWI ACGGA 1 cut(s) 504
TspRI CASTG 1 cut(s) 583
XbaI TCTAGA 1 cut(s) 103
XmiI GTMKAC 1 cut(s) 144
XspI CTAG 2 cut(s) 104, 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.