Rh7AG064100

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0012109
Physical Location & Seq
Forward (+)
4432307 .. 4434320
2014 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG064100.1

Sequence Viewer

Length: 576 bp
ATGGCCAATCTTAGTAGTCCAAGGTACCAGTTCTTGTTGGCTTTGCAGTTCCTTCTGTTGGTGCAATCCAGAGTCTGGTGCTATCAGTACAAAGTTGGAGATCTAGATGCTTGGGGAATACCCACTTCAGCAAACCCACAGGTCTACACCAAATGGTCAAAATACCATGAATTCAAGATTGGAGATTCTCTCTTGTTCTTGTACCCACCAAGCCAAGACTCAGTGATTCAAGTGACAGAGCAATCCTACAAGGACTGCAACCTCAAAGATCCAATCTTGTACATGAACAATGGCAACTCTCTCTTTAATTTTACTGCAGAAGGAGTGTTCTACTTCACAAGTGGAGAACCTGGTAACTGTGAAAAGGGCCAGAAGCTCTACATTGCTACAGGGAATGGCACTGCTTACTCTCCTGCATATGGTCCAAGTGGATTGCCGGATTCTGCTCCGTCCTACACCAACGTTTTCGGCTCAATTCCGGCACCGCCTTCTTCTTCACCATCACAAAGTGTTCCGCTTCTGATAATGGCTGTGATTGGTTTTGTGGTATGTGCATTAGTCGATGGCAATTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

191

Amino Acids

20.91

Weight (kDa)

4.96

Isoelectric Point (pI)

42.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 45 - 124 6.5e-20 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012109)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64640
fragaria_vesca FvH4_5g11040
malus_domestica MD06G1117200.v1.1 MD14G1124500.v1.1
prunus_persica Prupe.5G128300_v2.0.a1
pyrus_communis pycom06g10910 pycom14g11030
rosa_chinensis RchiOBHm_Chr7g0186761
rosa_laevigata RLG00000004818
rosa_multiflora Rmu_co8398473.1_g000001 Rmu_sc0009734.1_g000003 Rmu_ssc0000024.1_g000047
rosa_roxburghii Rroxscaffold_3G00267850
rosa_rugosa Rorug06G0476400
rosa_samantha Rh7AG064100 Rh7BG080600 Rh7CG083400 Rh7DG084300
rosa_wichuraiana Rw7G007230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 24
AccB1I GGYRCC 2 cut(s) 24, 481
AccB7I CCANNNNNTGG 1 cut(s) 75
AccI GTMKAC 1 cut(s) 144
AciI CCGC 2 cut(s) 485, 515
AclI AACGTT 1 cut(s) 462
AclWI GGATC 1 cut(s) 263
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 170
AcuI CTGAAG 1 cut(s) 111
AdeI CACNNNGTG 1 cut(s) 509
AfaI GTAC 4 cut(s) 26, 89, 203, 281
AfiI CCNNNNNNNGG 3 cut(s) 58, 75, 419
AgsI TTSAA 2 cut(s) 175, 230
AjnI CCWGG 1 cut(s) 349
AjuI GAANNNNNNNTTGG 2 cut(s) 162, 194
AluBI AGCT 1 cut(s) 376
AluI AGCT 1 cut(s) 376
AlwI GGATC 1 cut(s) 263
AlwNI CAGNNNCTG 1 cut(s) 75
AoxI GGCC 2 cut(s) 3, 367
ApoI RAATTY 1 cut(s) 170
Asp718I GGTACC 1 cut(s) 24
AspS9I GGNCC 2 cut(s) 367, 422
AsuHPI GGTGA 1 cut(s) 489
AvaII GGWCC 1 cut(s) 422
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 2 cut(s) 24, 481
BccI CCATC 2 cut(s) 508, 557
BciT130I CCWGG 1 cut(s) 351
BfaI CTAG 1 cut(s) 104
BfmI CTRYAG 2 cut(s) 315, 387
BglII AGATCT 1 cut(s) 100
Bme1390I CCNGG 1 cut(s) 351
Bme18I GGWCC 1 cut(s) 422
BmgT120I GGNCC 2 cut(s) 367, 422
BmiI GGNNCC 2 cut(s) 26, 483
BmrFI CCNGG 1 cut(s) 351
BmsI GCATC 1 cut(s) 97
BplI GAGNNNNNCTC 2 cut(s) 174, 206
BsaJI CCNNGG 1 cut(s) 20
Bsc4I CCNNNNNNNGG 3 cut(s) 58, 75, 419
Bse1I ACTGG 1 cut(s) 28
Bse3DI GCAATG 1 cut(s) 381
BseBI CCWGG 1 cut(s) 351
BseDI CCNNGG 1 cut(s) 20
BseLI CCNNNNNNNGG 3 cut(s) 58, 75, 419
BseMI GCAATG 1 cut(s) 381
BseMII CTCAG 1 cut(s) 234
BseNI ACTGG 1 cut(s) 28
BshFI GGCC 2 cut(s) 5, 369
BshNI GGYRCC 2 cut(s) 24, 481
BsiSI CCGG 2 cut(s) 437, 479
BslI CCNNNNNNNGG 3 cut(s) 58, 75, 419
BsnI GGCC 2 cut(s) 5, 369
Bsp1407I TGTACA 1 cut(s) 279
Bsp143I GATC 2 cut(s) 100, 268
BspACI CCGC 2 cut(s) 485, 515
BspANI GGCC 2 cut(s) 5, 369
BspCNI CTCAG 1 cut(s) 233
BspLI GGNNCC 2 cut(s) 26, 483
BspMAI CTGCAG 1 cut(s) 319
BspPI GGATC 1 cut(s) 263
BspT107I GGYRCC 2 cut(s) 24, 481
BsrDI GCAATG 1 cut(s) 381
BsrGI TGTACA 1 cut(s) 279
BsrI ACTGG 1 cut(s) 28
BssECI CCNNGG 1 cut(s) 20
BssMI GATC 2 cut(s) 100, 268
BssT1I CCWWGG 1 cut(s) 20
Bst2UI CCWGG 1 cut(s) 351
Bst4CI ACNGT 1 cut(s) 359
BstAUI TGTACA 1 cut(s) 279
BstDEI CTNAG 2 cut(s) 11, 220
BstKTI GATC 2 cut(s) 103, 271
BstMBI GATC 2 cut(s) 100, 268
BstNI CCWGG 1 cut(s) 351
BstSCI CCNGG 1 cut(s) 349
BstSFI CTRYAG 2 cut(s) 315, 387
BstX2I RGATCY 2 cut(s) 100, 268
BstYI RGATCY 2 cut(s) 100, 268
BsuRI GGCC 2 cut(s) 5, 369
BtsI GCAGTG 1 cut(s) 399
BtsIMutI CAGTG 2 cut(s) 228, 399
CaiI CAGNNNCTG 1 cut(s) 75
Cfr13I GGNCC 2 cut(s) 367, 422
CsiI ACCWGGT 1 cut(s) 349
Csp6I GTAC 4 cut(s) 25, 88, 202, 280
CviAII CATG 2 cut(s) 167, 283
CviJI RGCY 7 cut(s) 5, 41, 213, 369, 376, 471, 530
CviKI_1 RGCY 7 cut(s) 5, 41, 213, 369, 376, 471, 530
CviQI GTAC 4 cut(s) 25, 88, 202, 280
DdeI CTNAG 2 cut(s) 11, 220
DpnI GATC 2 cut(s) 102, 270
DpnII GATC 2 cut(s) 100, 268
DraIII CACNNNGTG 1 cut(s) 509
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 20
Eco47I GGWCC 1 cut(s) 422
Eco57I CTGAAG 1 cut(s) 111
EcoRI GAATTC 1 cut(s) 170
EcoRII CCWGG 1 cut(s) 349
EcoT14I CCWWGG 1 cut(s) 20
ErhI CCWWGG 1 cut(s) 20
FaeI CATG 2 cut(s) 170, 286
FaiI YATR 6 cut(s) 168, 284, 418, 420, 550, 574
FatI CATG 2 cut(s) 166, 282
FauNDI CATATG 1 cut(s) 418
FblI GTMKAC 1 cut(s) 144
FspBI CTAG 1 cut(s) 104
HaeIII GGCC 2 cut(s) 5, 369
HapII CCGG 2 cut(s) 437, 479
Hin1II CATG 2 cut(s) 170, 286
HinfI GANTC 5 cut(s) 72, 185, 218, 226, 440
HpaII CCGG 2 cut(s) 437, 479
HphI GGTGA 1 cut(s) 489
Hpy166II GTNNAC 1 cut(s) 145
Hpy188I TCNGA 1 cut(s) 522
Hpy188III TCNNGA 3 cut(s) 69, 104, 175
Hpy8I GTNNAC 1 cut(s) 145
HpyAV CCTTC 3 cut(s) 62, 314, 498
HpyCH4III ACNGT 1 cut(s) 359
HpyCH4IV ACGT 1 cut(s) 462
HpyCH4V TGCA 6 cut(s) 46, 64, 258, 317, 416, 554
HpyF3I CTNAG 2 cut(s) 11, 220
HpySE526I ACGT 1 cut(s) 462
Hsp92II CATG 2 cut(s) 170, 286
KpnI GGTACC 1 cut(s) 28
Kzo9I GATC 2 cut(s) 100, 268
LmnI GCTCC 1 cut(s) 451
LweI GCATC 1 cut(s) 97
MabI ACCWGGT 1 cut(s) 349
MaeI CTAG 1 cut(s) 104
MaeII ACGT 1 cut(s) 462
MaeIII GTNAC 2 cut(s) 232, 353
MalI GATC 2 cut(s) 102, 270
MboI GATC 2 cut(s) 100, 268
MboII GAAGA 2 cut(s) 483, 486
MflI RGATCY 2 cut(s) 100, 268
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 170, 307, 474, 568
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 81, 212
MmeI TCCRAC 1 cut(s) 76
MnlI CCTC 1 cut(s) 272
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 306
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 437, 479
MspR9I CCNGG 1 cut(s) 351
MvaI CCWGG 1 cut(s) 351
NdeI CATATG 1 cut(s) 418
NdeII GATC 2 cut(s) 100, 268
NlaIII CATG 2 cut(s) 170, 286
NlaIV GGNNCC 2 cut(s) 26, 483
NmuCI GTSAC 1 cut(s) 232
PfeI GAWTC 3 cut(s) 185, 226, 440
PflMI CCANNNNNTGG 1 cut(s) 75
PleI GAGTC 2 cut(s) 80, 212
PpsI GAGTC 2 cut(s) 80, 212
Psp1406I AACGTT 1 cut(s) 462
Psp6I CCWGG 1 cut(s) 349
PspGI CCWGG 1 cut(s) 349
PspN4I GGNNCC 2 cut(s) 26, 483
PspPI GGNCC 2 cut(s) 367, 422
PstI CTGCAG 1 cut(s) 319
PstNI CAGNNNCTG 1 cut(s) 75
PsuI RGATCY 2 cut(s) 100, 268
RsaI GTAC 4 cut(s) 26, 89, 203, 281
RsaNI GTAC 4 cut(s) 25, 88, 202, 280
SaqAI TTAA 1 cut(s) 306
Sau3AI GATC 2 cut(s) 100, 268
Sau96I GGNCC 2 cut(s) 367, 422
SchI GAGTC 2 cut(s) 81, 212
ScrFI CCNGG 1 cut(s) 351
SetI ASST 6 cut(s) 26, 144, 264, 352, 378, 465
SexAI ACCWGGT 1 cut(s) 349
SfaNI GCATC 1 cut(s) 97
SfcI CTRYAG 2 cut(s) 315, 387
SinI GGWCC 1 cut(s) 422
Sse9I AATT 4 cut(s) 170, 307, 474, 568
SsiI CCGC 2 cut(s) 485, 515
SspMI CTAG 1 cut(s) 104
StyD4I CCNGG 1 cut(s) 349
StyI CCWWGG 1 cut(s) 20
TaaI ACNGT 1 cut(s) 359
TaiI ACGT 1 cut(s) 465
TaqI TCGA 1 cut(s) 561
TasI AATT 4 cut(s) 170, 307, 474, 568
TatI WGTACW 2 cut(s) 87, 279
TfiI GAWTC 3 cut(s) 185, 226, 440
Tru1I TTAA 1 cut(s) 306
Tru9I TTAA 1 cut(s) 306
TscAI CASTG 2 cut(s) 228, 406
TseFI GTSAC 1 cut(s) 232
Tsp45I GTSAC 1 cut(s) 232
TspDTI ATGAA 2 cut(s) 183, 299
TspGWI ACGGA 1 cut(s) 438
TspRI CASTG 2 cut(s) 228, 406
Van91I CCANNNNNTGG 1 cut(s) 75
VpaK11BI GGWCC 1 cut(s) 422
XapI RAATTY 1 cut(s) 170
XbaI TCTAGA 1 cut(s) 103
XmiI GTMKAC 1 cut(s) 144
XspI CTAG 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.