MD14G1124500.v1.1

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0012109
Physical Location & Seq
Reverse (-)
20010553 .. 20011705
1153 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1124500.v1.1.491

Sequence Viewer

Length: 597 bp
ATGGCCAATCTCAGAACTCCAAGATTTCAGTTCCTTTTGGCTCTGCAGTTCCTCATGCTAATACAGTCCCAGGTGCTCTGCTACCAGTACAAAGTAGGAGATCTAGATGCTTGGGGAATACCAACTTCTGCAAAACCACAAGTCTACACCAAATGGTCAAAATACCACCAATTCAAGCTTGGAGATTCTCTTTTGTTCTTGTACCCACCAAGCCAAGACTCGGTGATTCAAGTGACAGCACAATCCTACGGCAGCTGCAACCTCAAAGATCCAATCTTGTCCATGAACGACGGTAACTCTCTCTTCAATTTCACCACATTGGGGGATTTCTACTTCACCAGCGGCGAACCGGGCCATTGCCAACAGAACCAGAAGCTGCACATTTCTTTTCTGTCGGGCAATGGCTCTGCTTACTCTCCCTCCTCCGGTCCCAGTGCATTGGATGCTTCCGCTCCTTCTTACCCCACCGTCTTCGGCAGCATCCCGGCTCCGCCAACTTCTGCACCGCATTCTTCTGCAGCGTCGCCAAGGTTTCCGGTTTTCGCTGCAGCGGTTGTTGGATTTGGGGTGTTTGCATTACACGGTGGTAATCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

199

Amino Acids

21.35

Weight (kDa)

7.74

Isoelectric Point (pI)

37.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 47 - 123 5e-19 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012109)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64640
fragaria_vesca FvH4_5g11040
malus_domestica MD06G1117200.v1.1 MD14G1124500.v1.1
prunus_persica Prupe.5G128300_v2.0.a1
pyrus_communis pycom06g10910 pycom14g11030
rosa_chinensis RchiOBHm_Chr7g0186761
rosa_laevigata RLG00000004818
rosa_multiflora Rmu_co8398473.1_g000001 Rmu_sc0009734.1_g000003 Rmu_ssc0000024.1_g000047
rosa_roxburghii Rroxscaffold_3G00267850
rosa_rugosa Rorug06G0476400
rosa_samantha Rh7AG064100 Rh7BG080600 Rh7CG083400 Rh7DG084300
rosa_wichuraiana Rw7G007230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 452
AccI GTMKAC 1 cut(s) 144
AciI CCGC 5 cut(s) 342, 450, 491, 506, 551
AclWI GGATC 1 cut(s) 263
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 2 cut(s) 89, 203
AfiI CCNNNNNNNGG 3 cut(s) 220, 321, 425
AgsI TTSAA 3 cut(s) 175, 230, 307
AjnI CCWGG 1 cut(s) 69
AluBI AGCT 3 cut(s) 178, 255, 376
AluI AGCT 3 cut(s) 178, 255, 376
Alw21I GWGCWC 1 cut(s) 78
AlwI GGATC 1 cut(s) 263
AlwNI CAGNNNCTG 1 cut(s) 376
AoxI GGCC 2 cut(s) 3, 352
ApeKI GCWGC 7 cut(s) 252, 255, 376, 477, 518, 545, 548
AspS9I GGNCC 2 cut(s) 352, 428
AsuC2I CCSGG 2 cut(s) 351, 485
AsuHPI GGTGA 3 cut(s) 235, 304, 328
AvaII GGWCC 1 cut(s) 428
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 463
Bbv12I GWGCWC 1 cut(s) 78
BbvI GCAGC 7 cut(s) 242, 264, 363, 489, 530, 532, 560
BceAI ACGGC 1 cut(s) 265
BciT130I CCWGG 1 cut(s) 71
BcnI CCSGG 2 cut(s) 351, 485
BfaI CTAG 1 cut(s) 104
BfmI CTRYAG 3 cut(s) 44, 516, 546
BglII AGATCT 1 cut(s) 100
BisI GCNGC 8 cut(s) 253, 256, 343, 377, 478, 519, 546, 549
BlsI GCNGC 8 cut(s) 254, 257, 344, 378, 479, 520, 547, 550
Bme1390I CCNGG 3 cut(s) 71, 351, 485
Bme18I GGWCC 1 cut(s) 428
BmgT120I GGNCC 2 cut(s) 352, 428
BmiI GGNNCC 2 cut(s) 430, 489
BmrFI CCNGG 3 cut(s) 71, 351, 485
BmrI ACTGGG 1 cut(s) 426
BmsI GCATC 3 cut(s) 97, 433, 489
BmuI ACTGGG 1 cut(s) 426
BpiI GAAGAC 1 cut(s) 463
BpuMI CCSGG 2 cut(s) 351, 485
BsaJI CCNNGG 2 cut(s) 69, 527
BsaWI WCCGGW 2 cut(s) 425, 535
BsaXI ACNNNNNCTCC 2 cut(s) 404, 434
Bsc4I CCNNNNNNNGG 3 cut(s) 220, 321, 425
Bse1I ACTGG 2 cut(s) 85, 432
Bse3DI GCAATG 2 cut(s) 355, 406
BseBI CCWGG 1 cut(s) 71
BseDI CCNNGG 2 cut(s) 69, 527
BseGI GGATG 2 cut(s) 448, 480
BseLI CCNNNNNNNGG 3 cut(s) 220, 321, 425
BseMI GCAATG 2 cut(s) 355, 406
BseMII CTCAG 1 cut(s) 25
BseNI ACTGG 2 cut(s) 85, 432
BseRI GAGGAG 1 cut(s) 412
BseXI GCAGC 7 cut(s) 242, 264, 363, 489, 530, 532, 560
BsgI GTGCAG 2 cut(s) 362, 486
BshFI GGCC 2 cut(s) 5, 354
BsiHKAI GWGCWC 1 cut(s) 78
BsiSI CCGG 4 cut(s) 350, 426, 485, 536
BslFI GGGAC 2 cut(s) 52, 414
BslI CCNNNNNNNGG 3 cut(s) 220, 321, 425
BsmFI GGGAC 2 cut(s) 52, 414
BsmI GAATGC 1 cut(s) 508
BsnI GGCC 2 cut(s) 5, 354
Bsp1286I GDGCHC 1 cut(s) 78
Bsp143I GATC 2 cut(s) 100, 268
BspACI CCGC 5 cut(s) 342, 450, 491, 506, 551
BspANI GGCC 2 cut(s) 5, 354
BspCNI CTCAG 1 cut(s) 24
BspLI GGNNCC 2 cut(s) 430, 489
BspMAI CTGCAG 3 cut(s) 48, 520, 550
BspPI GGATC 1 cut(s) 263
BsrBI CCGCTC 1 cut(s) 452
BsrDI GCAATG 2 cut(s) 355, 406
BsrI ACTGG 2 cut(s) 85, 432
BssECI CCNNGG 2 cut(s) 69, 527
BssMI GATC 2 cut(s) 100, 268
BssT1I CCWWGG 1 cut(s) 527
Bst2UI CCWGG 1 cut(s) 71
Bst4CI ACNGT 4 cut(s) 66, 293, 469, 584
Bst6I CTCTTC 1 cut(s) 308
BstAPI GCANNNNNTGC 1 cut(s) 443
BstDEI CTNAG 1 cut(s) 11
BstF5I GGATG 2 cut(s) 448, 480
BstKTI GATC 2 cut(s) 103, 271
BstMBI GATC 2 cut(s) 100, 268
BstMWI GCNNNNNNNGC 2 cut(s) 351, 443
BstNI CCWGG 1 cut(s) 71
BstSCI CCNGG 3 cut(s) 69, 349, 483
BstSFI CTRYAG 3 cut(s) 44, 516, 546
BstV1I GCAGC 7 cut(s) 242, 264, 363, 489, 530, 532, 560
BstV2I GAAGAC 1 cut(s) 463
BstX2I RGATCY 2 cut(s) 100, 268
BstXI CCANNNNNNTGG 1 cut(s) 439
BstYI RGATCY 2 cut(s) 100, 268
BsuRI GGCC 2 cut(s) 5, 354
BtsCI GGATG 2 cut(s) 448, 480
BtsIMutI CAGTG 1 cut(s) 439
CaiI CAGNNNCTG 1 cut(s) 376
Cfr13I GGNCC 2 cut(s) 352, 428
CseI GACGC 1 cut(s) 510
Csp6I GTAC 2 cut(s) 88, 202
CviAII CATG 2 cut(s) 55, 283
CviJI RGCY 9 cut(s) 5, 41, 178, 213, 255, 354, 376, 405, 488
CviKI_1 RGCY 9 cut(s) 5, 41, 178, 213, 255, 354, 376, 405, 488
CviQI GTAC 2 cut(s) 88, 202
DdeI CTNAG 1 cut(s) 11
DpnI GATC 2 cut(s) 102, 270
DpnII GATC 2 cut(s) 100, 268
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 308
EarI CTCTTC 1 cut(s) 308
EciI GGCGGA 1 cut(s) 480
Eco130I CCWWGG 1 cut(s) 527
Eco47I GGWCC 1 cut(s) 428
EcoRII CCWGG 1 cut(s) 69
EcoT14I CCWWGG 1 cut(s) 527
ErhI CCWWGG 1 cut(s) 527
FaeI CATG 2 cut(s) 58, 286
FaiI YATR 2 cut(s) 56, 284
FaqI GGGAC 2 cut(s) 52, 414
FatI CATG 2 cut(s) 54, 282
FblI GTMKAC 1 cut(s) 144
Fnu4HI GCNGC 8 cut(s) 253, 256, 343, 377, 478, 519, 546, 549
FokI GGATG 2 cut(s) 455, 467
Fsp4HI GCNGC 8 cut(s) 253, 256, 343, 377, 478, 519, 546, 549
FspBI CTAG 1 cut(s) 104
GluI GCNGC 8 cut(s) 253, 256, 343, 377, 478, 519, 546, 549
HaeIII GGCC 2 cut(s) 5, 354
HapII CCGG 4 cut(s) 350, 426, 485, 536
HgaI GACGC 1 cut(s) 510
Hin1II CATG 2 cut(s) 58, 286
HindIII AAGCTT 1 cut(s) 176
HinfI GANTC 3 cut(s) 185, 218, 226
HpaII CCGG 4 cut(s) 350, 426, 485, 536
HphI GGTGA 3 cut(s) 235, 304, 328
Hpy166II GTNNAC 1 cut(s) 145
Hpy188I TCNGA 1 cut(s) 14
Hpy188III TCNNGA 1 cut(s) 104
Hpy8I GTNNAC 1 cut(s) 145
Hpy99I CGWCG 2 cut(s) 293, 526
HpyAV CCTTC 1 cut(s) 465
HpyCH4III ACNGT 4 cut(s) 66, 293, 469, 584
HpyCH4V TGCA 9 cut(s) 46, 131, 258, 379, 437, 503, 518, 548, 575
HpyF10VI GCNNNNNNNGC 2 cut(s) 351, 443
HpyF3I CTNAG 1 cut(s) 11
Hsp92II CATG 2 cut(s) 58, 286
Kzo9I GATC 2 cut(s) 100, 268
LmnI GCTCC 2 cut(s) 457, 493
Lsp1109I GCAGC 7 cut(s) 242, 264, 363, 489, 530, 532, 560
LweI GCATC 3 cut(s) 97, 433, 489
MaeI CTAG 1 cut(s) 104
MaeIII GTNAC 2 cut(s) 232, 293
MalI GATC 2 cut(s) 102, 270
MbiI CCGCTC 1 cut(s) 452
MboI GATC 2 cut(s) 100, 268
MboII GAAGA 3 cut(s) 295, 463, 504
MflI RGATCY 2 cut(s) 100, 268
MhlI GDGCHC 1 cut(s) 78
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 170, 307
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 212
MmeI TCCRAC 1 cut(s) 538
MnlI CCTC 4 cut(s) 62, 272, 430, 433
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 3 cut(s) 255, 342, 551
MspI CCGG 4 cut(s) 350, 426, 485, 536
MspR9I CCNGG 3 cut(s) 71, 351, 485
Mva1269I GAATGC 1 cut(s) 508
MvaI CCWGG 1 cut(s) 71
MwoI GCNNNNNNNGC 2 cut(s) 351, 443
NciI CCSGG 2 cut(s) 351, 485
NdeII GATC 2 cut(s) 100, 268
NlaIII CATG 2 cut(s) 58, 286
NlaIV GGNNCC 2 cut(s) 430, 489
NmuCI GTSAC 1 cut(s) 232
PctI GAATGC 1 cut(s) 508
PfeI GAWTC 2 cut(s) 185, 226
PkrI GCNGC 8 cut(s) 254, 257, 344, 378, 479, 520, 547, 550
PleI GAGTC 1 cut(s) 212
PpsI GAGTC 1 cut(s) 212
Psp6I CCWGG 1 cut(s) 69
PspGI CCWGG 1 cut(s) 69
PspN4I GGNNCC 2 cut(s) 430, 489
PspPI GGNCC 2 cut(s) 352, 428
PstI CTGCAG 3 cut(s) 48, 520, 550
PstNI CAGNNNCTG 1 cut(s) 376
PsuI RGATCY 2 cut(s) 100, 268
PvuII CAGCTG 1 cut(s) 255
RsaI GTAC 2 cut(s) 89, 203
RsaNI GTAC 2 cut(s) 88, 202
SatI GCNGC 8 cut(s) 253, 256, 343, 377, 478, 519, 546, 549
Sau3AI GATC 2 cut(s) 100, 268
Sau96I GGNCC 2 cut(s) 352, 428
SchI GAGTC 1 cut(s) 212
ScrFI CCNGG 3 cut(s) 71, 351, 485
SduI GDGCHC 1 cut(s) 78
SetI ASST 6 cut(s) 75, 180, 257, 264, 378, 533
SfaNI GCATC 3 cut(s) 97, 433, 489
SfcI CTRYAG 3 cut(s) 44, 516, 546
SinI GGWCC 1 cut(s) 428
Sse9I AATT 2 cut(s) 170, 307
SsiI CCGC 5 cut(s) 342, 450, 491, 506, 551
SspMI CTAG 1 cut(s) 104
StyD4I CCNGG 3 cut(s) 69, 349, 483
StyI CCWWGG 1 cut(s) 527
TaaI ACNGT 4 cut(s) 66, 293, 469, 584
TasI AATT 2 cut(s) 170, 307
TatI WGTACW 1 cut(s) 87
TauI GCSGC 1 cut(s) 345
TfiI GAWTC 2 cut(s) 185, 226
TscAI CASTG 1 cut(s) 439
TseFI GTSAC 1 cut(s) 232
TseI GCWGC 7 cut(s) 252, 255, 376, 477, 518, 545, 548
Tsp45I GTSAC 1 cut(s) 232
TspDTI ATGAA 1 cut(s) 299
TspRI CASTG 1 cut(s) 439
VpaK11BI GGWCC 1 cut(s) 428
XbaI TCTAGA 1 cut(s) 103
XcmI CCANNNNNNNNNTGG 1 cut(s) 176
XmiI GTMKAC 1 cut(s) 144
XspI CTAG 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.