Rh7CG083400

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0012109
Physical Location & Seq
Reverse (-)
6058067 .. 6059905
1839 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG083400.1

Sequence Viewer

Length: 579 bp
ATGGCCAATCTTGGAAGTAGTCCAAGGTACCAGTTCTTGTTGGCTTTGCAGTTCCTTCTGTTGGTGCAATCCAGCGTCTGGTGCTATCAGTACAAAGTTGGAGATCTAGATGCTTGGGGAATACCCACTTCAGCAAACCCACAAGTCTACACCCAATGGTCAAAATACCATGAATTCAAGATTGGAGATTCTCTCTTGTTCTTGTACCCACCAAGCCAAGACTCGGTGATTCAAGTGACAGAGCAATCCTACAAGGACTGCAACCTCAAAGATCCAATCTTGTACATGAACAATGGCAACTCTCTCTTTAATTTTACTGCAGAAGGAGTGTTCTACTTCACAAGTGGAGAACCTGGTAACTGTGAAAAGGGCCAGAAGCTCTACACTGCTACAGGGAATGGCACTGCTTACTCTCCTGCATATGGTCCAAGTGGATTGCCGGATTCTGTTCCGTCTTACACCAACGTTTTCGGCTCAATTCCGGCACCGCCTTCTTCTTCACCATCACGAAGTGTTCCACTTCTGATAATGGCTGTGATTGGTTTTGTGGTATGTGCATTACTCGATGGCAATTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

192

Amino Acids

20.96

Weight (kDa)

4.75

Isoelectric Point (pI)

42.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 46 - 125 7.7e-20 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012109)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64640
fragaria_vesca FvH4_5g11040
malus_domestica MD06G1117200.v1.1 MD14G1124500.v1.1
prunus_persica Prupe.5G128300_v2.0.a1
pyrus_communis pycom06g10910 pycom14g11030
rosa_chinensis RchiOBHm_Chr7g0186761
rosa_laevigata RLG00000004818
rosa_multiflora Rmu_co8398473.1_g000001 Rmu_sc0009734.1_g000003 Rmu_ssc0000024.1_g000047
rosa_roxburghii Rroxscaffold_3G00267850
rosa_rugosa Rorug06G0476400
rosa_samantha Rh7AG064100 Rh7BG080600 Rh7CG083400 Rh7DG084300
rosa_wichuraiana Rw7G007230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 27
AccB1I GGYRCC 2 cut(s) 27, 484
AccB7I CCANNNNNTGG 1 cut(s) 78
AccI GTMKAC 1 cut(s) 147
AciI CCGC 1 cut(s) 488
AclI AACGTT 1 cut(s) 465
AclWI GGATC 1 cut(s) 266
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 173
AcuI CTGAAG 1 cut(s) 114
AdeI CACNNNGTG 1 cut(s) 512
AfaI GTAC 4 cut(s) 29, 92, 206, 284
AfiI CCNNNNNNNGG 4 cut(s) 61, 78, 223, 422
AgsI TTSAA 2 cut(s) 178, 233
AjnI CCWGG 1 cut(s) 352
AjuI GAANNNNNNNTTGG 2 cut(s) 165, 197
AluBI AGCT 1 cut(s) 379
AluI AGCT 1 cut(s) 379
AlwI GGATC 1 cut(s) 266
AlwNI CAGNNNCTG 1 cut(s) 78
AoxI GGCC 2 cut(s) 3, 370
ApoI RAATTY 1 cut(s) 173
Asp718I GGTACC 1 cut(s) 27
AspS9I GGNCC 2 cut(s) 370, 425
AsuHPI GGTGA 2 cut(s) 238, 492
AvaII GGWCC 1 cut(s) 425
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 2 cut(s) 27, 484
BccI CCATC 2 cut(s) 511, 560
BciT130I CCWGG 1 cut(s) 354
BfaI CTAG 1 cut(s) 107
BfmI CTRYAG 2 cut(s) 318, 390
BglII AGATCT 1 cut(s) 103
Bme1390I CCNGG 1 cut(s) 354
Bme18I GGWCC 1 cut(s) 425
BmgT120I GGNCC 2 cut(s) 370, 425
BmiI GGNNCC 2 cut(s) 29, 486
BmrFI CCNGG 1 cut(s) 354
BmsI GCATC 1 cut(s) 100
BplI GAGNNNNNCTC 2 cut(s) 177, 209
BsaJI CCNNGG 1 cut(s) 23
Bsc4I CCNNNNNNNGG 4 cut(s) 61, 78, 223, 422
Bse1I ACTGG 1 cut(s) 31
BseBI CCWGG 1 cut(s) 354
BseDI CCNNGG 1 cut(s) 23
BseLI CCNNNNNNNGG 4 cut(s) 61, 78, 223, 422
BseNI ACTGG 1 cut(s) 31
BshFI GGCC 2 cut(s) 5, 372
BshNI GGYRCC 2 cut(s) 27, 484
BsiSI CCGG 2 cut(s) 440, 482
BslI CCNNNNNNNGG 4 cut(s) 61, 78, 223, 422
BsnI GGCC 2 cut(s) 5, 372
Bsp1407I TGTACA 1 cut(s) 282
Bsp143I GATC 2 cut(s) 103, 271
BspACI CCGC 1 cut(s) 488
BspANI GGCC 2 cut(s) 5, 372
BspLI GGNNCC 2 cut(s) 29, 486
BspMAI CTGCAG 1 cut(s) 322
BspPI GGATC 1 cut(s) 266
BspT107I GGYRCC 2 cut(s) 27, 484
BsrGI TGTACA 1 cut(s) 282
BsrI ACTGG 1 cut(s) 31
BssECI CCNNGG 1 cut(s) 23
BssMI GATC 2 cut(s) 103, 271
BssT1I CCWWGG 1 cut(s) 23
Bst2UI CCWGG 1 cut(s) 354
Bst4CI ACNGT 1 cut(s) 362
BstAUI TGTACA 1 cut(s) 282
BstKTI GATC 2 cut(s) 106, 274
BstMBI GATC 2 cut(s) 103, 271
BstMWI GCNNNNNNNGC 1 cut(s) 81
BstNI CCWGG 1 cut(s) 354
BstSCI CCNGG 1 cut(s) 352
BstSFI CTRYAG 2 cut(s) 318, 390
BstX2I RGATCY 2 cut(s) 103, 271
BstYI RGATCY 2 cut(s) 103, 271
BsuRI GGCC 2 cut(s) 5, 372
BtsI GCAGTG 2 cut(s) 384, 402
BtsIMutI CAGTG 2 cut(s) 384, 402
CaiI CAGNNNCTG 1 cut(s) 78
Cfr13I GGNCC 2 cut(s) 370, 425
CseI GACGC 1 cut(s) 64
CsiI ACCWGGT 1 cut(s) 352
Csp6I GTAC 4 cut(s) 28, 91, 205, 283
CviAII CATG 2 cut(s) 170, 286
CviJI RGCY 7 cut(s) 5, 44, 216, 372, 379, 474, 533
CviKI_1 RGCY 7 cut(s) 5, 44, 216, 372, 379, 474, 533
CviQI GTAC 4 cut(s) 28, 91, 205, 283
DpnI GATC 2 cut(s) 105, 273
DpnII GATC 2 cut(s) 103, 271
DraIII CACNNNGTG 1 cut(s) 512
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 23
Eco47I GGWCC 1 cut(s) 425
Eco57I CTGAAG 1 cut(s) 114
EcoRI GAATTC 1 cut(s) 173
EcoRII CCWGG 1 cut(s) 352
EcoT14I CCWWGG 1 cut(s) 23
ErhI CCWWGG 1 cut(s) 23
FaeI CATG 2 cut(s) 173, 289
FaiI YATR 6 cut(s) 171, 287, 421, 423, 553, 577
FatI CATG 2 cut(s) 169, 285
FauNDI CATATG 1 cut(s) 421
FblI GTMKAC 1 cut(s) 147
FspBI CTAG 1 cut(s) 107
HaeIII GGCC 2 cut(s) 5, 372
HapII CCGG 2 cut(s) 440, 482
HgaI GACGC 1 cut(s) 64
Hin1II CATG 2 cut(s) 173, 289
HinfI GANTC 4 cut(s) 188, 221, 229, 443
HpaII CCGG 2 cut(s) 440, 482
HphI GGTGA 2 cut(s) 238, 492
Hpy166II GTNNAC 1 cut(s) 148
Hpy188I TCNGA 1 cut(s) 525
Hpy188III TCNNGA 3 cut(s) 107, 178, 507
Hpy8I GTNNAC 1 cut(s) 148
HpyAV CCTTC 3 cut(s) 65, 317, 501
HpyCH4III ACNGT 1 cut(s) 362
HpyCH4IV ACGT 1 cut(s) 465
HpyCH4V TGCA 6 cut(s) 49, 67, 261, 320, 419, 557
HpyF10VI GCNNNNNNNGC 1 cut(s) 81
HpySE526I ACGT 1 cut(s) 465
Hsp92II CATG 2 cut(s) 173, 289
KpnI GGTACC 1 cut(s) 31
Kzo9I GATC 2 cut(s) 103, 271
LweI GCATC 1 cut(s) 100
MabI ACCWGGT 1 cut(s) 352
MaeI CTAG 1 cut(s) 107
MaeII ACGT 1 cut(s) 465
MaeIII GTNAC 2 cut(s) 235, 356
MalI GATC 2 cut(s) 105, 273
MboI GATC 2 cut(s) 103, 271
MboII GAAGA 2 cut(s) 486, 489
MflI RGATCY 2 cut(s) 103, 271
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 173, 310, 477, 571
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 215
MmeI TCCRAC 1 cut(s) 79
MnlI CCTC 1 cut(s) 275
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 309
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 440, 482
MspR9I CCNGG 1 cut(s) 354
MvaI CCWGG 1 cut(s) 354
MwoI GCNNNNNNNGC 1 cut(s) 81
NdeI CATATG 1 cut(s) 421
NdeII GATC 2 cut(s) 103, 271
NlaIII CATG 2 cut(s) 173, 289
NlaIV GGNNCC 2 cut(s) 29, 486
NmuCI GTSAC 1 cut(s) 235
PfeI GAWTC 3 cut(s) 188, 229, 443
PflMI CCANNNNNTGG 1 cut(s) 78
PleI GAGTC 1 cut(s) 215
PpsI GAGTC 1 cut(s) 215
Psp1406I AACGTT 1 cut(s) 465
Psp6I CCWGG 1 cut(s) 352
PspGI CCWGG 1 cut(s) 352
PspN4I GGNNCC 2 cut(s) 29, 486
PspPI GGNCC 2 cut(s) 370, 425
PstI CTGCAG 1 cut(s) 322
PstNI CAGNNNCTG 1 cut(s) 78
PsuI RGATCY 2 cut(s) 103, 271
RsaI GTAC 4 cut(s) 29, 92, 206, 284
RsaNI GTAC 4 cut(s) 28, 91, 205, 283
SaqAI TTAA 1 cut(s) 309
Sau3AI GATC 2 cut(s) 103, 271
Sau96I GGNCC 2 cut(s) 370, 425
SchI GAGTC 1 cut(s) 215
ScrFI CCNGG 1 cut(s) 354
SetI ASST 5 cut(s) 29, 267, 355, 381, 468
SexAI ACCWGGT 1 cut(s) 352
SfaNI GCATC 1 cut(s) 100
SfcI CTRYAG 2 cut(s) 318, 390
SinI GGWCC 1 cut(s) 425
Sse9I AATT 4 cut(s) 173, 310, 477, 571
SsiI CCGC 1 cut(s) 488
SspMI CTAG 1 cut(s) 107
StyD4I CCNGG 1 cut(s) 352
StyI CCWWGG 1 cut(s) 23
TaaI ACNGT 1 cut(s) 362
TaiI ACGT 1 cut(s) 468
TaqI TCGA 1 cut(s) 564
TasI AATT 4 cut(s) 173, 310, 477, 571
TatI WGTACW 2 cut(s) 90, 282
TfiI GAWTC 3 cut(s) 188, 229, 443
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TscAI CASTG 2 cut(s) 391, 409
TseFI GTSAC 1 cut(s) 235
Tsp45I GTSAC 1 cut(s) 235
TspDTI ATGAA 2 cut(s) 186, 302
TspGWI ACGGA 1 cut(s) 441
TspRI CASTG 2 cut(s) 391, 409
Van91I CCANNNNNTGG 1 cut(s) 78
VpaK11BI GGWCC 1 cut(s) 425
XapI RAATTY 1 cut(s) 173
XbaI TCTAGA 1 cut(s) 106
XmiI GTMKAC 1 cut(s) 147
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.