AT1G65295

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013487
Physical Location & Seq
Forward (+)
24251373 .. 24252940
1568 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G65295.1

Sequence Viewer

Length: 348 bp
ATGAGAACTTTAGAAGAATCGAAGATCTCTATTGTCTTCTTGTTGCTTCTTCTCTTCTCAATCTTCATCAGTTCCAGTCACCAGGCAAATGAGGTATTACCAGCTGAAGGAGATAATGAGATGATGATGGTGCCATTGGGGGAGGAGAAGTTTATGGTAATGAATGAAACAAGAAGGAAACTTGGAAGTTTTCAGATATGTTCAGTTTGTACTTGTTGTGGTGGTGCTAAAGGTCTTTGCTTGCCTTCTCCTTGTTGCTATGCTATTAACTGCAATATCCCTAATAGACCCTTTGGTTACTGTTCTTTCACTCCCAAAACTTGCAATTGCTTTGGTTGCCATATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.73

Weight (kDa)

6.68

Isoelectric Point (pI)

51.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7866 PF25268 63 - 114 1.8e-23 Domain of unknown function (DUF7866)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013487)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65295
fragaria_vesca FvH4_6g00580
malus_domestica MD04G1244000.v1.1 MD12G1259800.v1.1
prunus_persica Prupe.1G131400_v2.0.a1 Prupe.6G360500_v2.0.a1
pyrus_communis pycom04g21490 pycom12g23790
rosa_chinensis RchiOBHm_Chr3g0447971
rosa_laevigata RLG00000025956
rosa_multiflora Rmu_sc0005969.1_g000009
rosa_roxburghii Rroxscaffold_6G00426160
rosa_rugosa Rorug02G0607500
rosa_samantha Rh3AG006700 Rh3BG006400 Rh3CG006600 Rh3DG007000
rosa_wichuraiana Rw3G000540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 130
AcuI CTGAAG 1 cut(s) 126
AfaI GTAC 1 cut(s) 211
AfiI CCNNNNNNNGG 1 cut(s) 107
AjnI CCWGG 1 cut(s) 81
AluBI AGCT 1 cut(s) 104
AluI AGCT 1 cut(s) 104
AsuHPI GGTGA 1 cut(s) 71
BanI GGYRCC 1 cut(s) 130
BbsI GAAGAC 1 cut(s) 28
BccI CCATC 1 cut(s) 121
BciT130I CCWGG 1 cut(s) 83
BglII AGATCT 1 cut(s) 24
Bme1390I CCNGG 1 cut(s) 83
BmiI GGNNCC 1 cut(s) 132
BmrFI CCNGG 1 cut(s) 83
BpiI GAAGAC 1 cut(s) 28
BsaXI ACNNNNNCTCC 2 cut(s) 134, 164
Bsc4I CCNNNNNNNGG 1 cut(s) 107
Bse1I ACTGG 1 cut(s) 75
BseBI CCWGG 1 cut(s) 83
BseLI CCNNNNNNNGG 1 cut(s) 107
BseNI ACTGG 1 cut(s) 75
BseRI GAGGAG 1 cut(s) 158
BshNI GGYRCC 1 cut(s) 130
BslI CCNNNNNNNGG 1 cut(s) 107
Bsp143I GATC 1 cut(s) 24
BspLI GGNNCC 1 cut(s) 132
BspT107I GGYRCC 1 cut(s) 130
BsrI ACTGG 1 cut(s) 75
BssMI GATC 1 cut(s) 24
Bst2UI CCWGG 1 cut(s) 83
Bst4CI ACNGT 1 cut(s) 302
Bst6I CTCTTC 1 cut(s) 59
BstC8I GCNNGC 1 cut(s) 242
BstKTI GATC 1 cut(s) 27
BstMBI GATC 1 cut(s) 24
BstMWI GCNNNNNNNGC 1 cut(s) 336
BstNI CCWGG 1 cut(s) 83
BstSCI CCNGG 1 cut(s) 81
BstV2I GAAGAC 1 cut(s) 28
BstX2I RGATCY 1 cut(s) 24
BstYI RGATCY 1 cut(s) 24
Cac8I GCNNGC 1 cut(s) 242
Csp6I GTAC 1 cut(s) 210
CviJI RGCY 1 cut(s) 104
CviKI_1 RGCY 1 cut(s) 104
CviQI GTAC 1 cut(s) 210
DpnI GATC 1 cut(s) 26
DpnII GATC 1 cut(s) 24
Eam1104I CTCTTC 1 cut(s) 59
EarI CTCTTC 1 cut(s) 59
Eco57I CTGAAG 1 cut(s) 126
EcoRII CCWGG 1 cut(s) 81
FaiI YATR 4 cut(s) 155, 199, 261, 342
HinfI GANTC 1 cut(s) 17
HphI GGTGA 1 cut(s) 71
Hpy188I TCNGA 2 cut(s) 195, 347
HpyAV CCTTC 3 cut(s) 101, 168, 255
HpyCH4III ACNGT 1 cut(s) 302
HpyCH4V TGCA 2 cut(s) 273, 324
HpyF10VI GCNNNNNNNGC 1 cut(s) 336
Kzo9I GATC 1 cut(s) 24
LpnPI CCDG 4 cut(s) 68, 88, 95, 114
MaeIII GTNAC 2 cut(s) 77, 296
MalI GATC 1 cut(s) 26
MboI GATC 1 cut(s) 24
MboII GAAGA 6 cut(s) 26, 28, 34, 41, 46, 55
MfeI CAATTG 1 cut(s) 325
MflI RGATCY 1 cut(s) 24
MluCI AATT 1 cut(s) 325
MnlI CCTC 2 cut(s) 85, 136
MseI TTAA 1 cut(s) 267
MspA1I CMGCKG 1 cut(s) 104
MspR9I CCNGG 1 cut(s) 83
MunI CAATTG 1 cut(s) 325
MvaI CCWGG 1 cut(s) 83
MwoI GCNNNNNNNGC 1 cut(s) 336
NdeII GATC 1 cut(s) 24
NlaIV GGNNCC 1 cut(s) 132
NmuCI GTSAC 1 cut(s) 77
PfeI GAWTC 1 cut(s) 17
Psp6I CCWGG 1 cut(s) 81
PspGI CCWGG 1 cut(s) 81
PspN4I GGNNCC 1 cut(s) 132
PsuI RGATCY 1 cut(s) 24
PvuII CAGCTG 1 cut(s) 104
RsaI GTAC 1 cut(s) 211
RsaNI GTAC 1 cut(s) 210
SaqAI TTAA 1 cut(s) 267
Sau3AI GATC 1 cut(s) 24
ScrFI CCNGG 1 cut(s) 83
SetI ASST 3 cut(s) 96, 106, 235
Sse9I AATT 1 cut(s) 325
StyD4I CCNGG 1 cut(s) 81
TaaI ACNGT 1 cut(s) 302
TaqI TCGA 1 cut(s) 20
TasI AATT 1 cut(s) 325
TatI WGTACW 1 cut(s) 209
TfiI GAWTC 1 cut(s) 17
Tru1I TTAA 1 cut(s) 267
Tru9I TTAA 1 cut(s) 267
TseFI GTSAC 1 cut(s) 77
Tsp45I GTSAC 1 cut(s) 77
TspDTI ATGAA 3 cut(s) 55, 176, 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.