FvH4_6g00580

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0013487
Physical Location & Seq
Forward (+)
339974 .. 341273
1300 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g00580.t1

Sequence Viewer

Length: 360 bp
ATGATGCCTTCTTCTTATGGGGTCATCTTCCTCTCCCTCATATTGCTGCTCTTTTTGGCTACTGAGGTCATTAGCACTGAACCAAGCTCAACTCATGCAAATGGGTCTGAGAAAGTGGATGAACCACCATTTGTGCCACTGATAGAACCTGAAAAGTTGAAGACTTTGGTGATGAATGAGACTAGGAGGAGGTTGGGGAGCTTTCAGATTTGTGCACTGTGTACTTGCTGTGGAGGAGCTAAAGGTCTTTGCTTGCCTTCTCCTTGTTGCTATGCAATCAATTGCAACATTCCCAACAGGCCCTTTGGTTTCTGTTCTTTCACTCCCAAGACCTGTAATTGCTTTGGATGCCATTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.01

Weight (kDa)

7.44

Isoelectric Point (pI)

70.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7866 PF25268 67 - 118 4.3e-23 Domain of unknown function (DUF7866)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013487)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65295
fragaria_vesca FvH4_6g00580
malus_domestica MD04G1244000.v1.1 MD12G1259800.v1.1
prunus_persica Prupe.1G131400_v2.0.a1 Prupe.6G360500_v2.0.a1
pyrus_communis pycom04g21490 pycom12g23790
rosa_chinensis RchiOBHm_Chr3g0447971
rosa_laevigata RLG00000025956
rosa_multiflora Rmu_sc0005969.1_g000009
rosa_roxburghii Rroxscaffold_6G00426160
rosa_rugosa Rorug02G0607500
rosa_samantha Rh3AG006700 Rh3BG006400 Rh3CG006600 Rh3DG007000
rosa_wichuraiana Rw3G000540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 223
AgsI TTSAA 1 cut(s) 160
AluBI AGCT 3 cut(s) 87, 201, 239
AluI AGCT 3 cut(s) 87, 201, 239
Alw21I GWGCWC 1 cut(s) 217
Alw26I GTCTC 1 cut(s) 173
Alw44I GTGCAC 1 cut(s) 213
AoxI GGCC 1 cut(s) 299
ApaLI GTGCAC 1 cut(s) 213
ApeKI GCWGC 1 cut(s) 46
AspS9I GGNCC 1 cut(s) 300
AsuHPI GGTGA 1 cut(s) 181
BaeGI GKGCMC 1 cut(s) 217
BbsI GAAGAC 1 cut(s) 167
Bbv12I GWGCWC 1 cut(s) 217
BbvI GCAGC 1 cut(s) 33
BcoDI GTCTC 1 cut(s) 173
BfaI CTAG 1 cut(s) 183
BisI GCNGC 1 cut(s) 47
BlsI GCNGC 1 cut(s) 48
BmgT120I GGNCC 1 cut(s) 300
BmsI GCATC 1 cut(s) 338
BpiI GAAGAC 1 cut(s) 167
BseGI GGATG 2 cut(s) 124, 353
BseMII CTCAG 2 cut(s) 54, 99
BseRI GAGGAG 2 cut(s) 202, 249
BseSI GKGCMC 1 cut(s) 217
BseXI GCAGC 1 cut(s) 33
BshFI GGCC 1 cut(s) 301
BsiHKAI GWGCWC 1 cut(s) 217
BsmAI GTCTC 1 cut(s) 173
BsnI GGCC 1 cut(s) 301
Bsp1286I GDGCHC 1 cut(s) 217
BspANI GGCC 1 cut(s) 301
BspCNI CTCAG 2 cut(s) 55, 100
Bst4CI ACNGT 1 cut(s) 219
BstC8I GCNNGC 1 cut(s) 254
BstDEI CTNAG 2 cut(s) 63, 108
BstF5I GGATG 2 cut(s) 124, 353
BstMAI GTCTC 1 cut(s) 173
BstMWI GCNNNNNNNGC 1 cut(s) 348
BstSLI GKGCMC 1 cut(s) 217
BstV1I GCAGC 1 cut(s) 33
BstV2I GAAGAC 1 cut(s) 167
BsuRI GGCC 1 cut(s) 301
BtsCI GGATG 2 cut(s) 124, 353
BtsIMutI CAGTG 3 cut(s) 75, 137, 215
Cac8I GCNNGC 1 cut(s) 254
Cfr13I GGNCC 1 cut(s) 300
Csp6I GTAC 1 cut(s) 222
CviAII CATG 1 cut(s) 95
CviJI RGCY 5 cut(s) 59, 87, 201, 239, 301
CviKI_1 RGCY 5 cut(s) 59, 87, 201, 239, 301
CviQI GTAC 1 cut(s) 222
DdeI CTNAG 2 cut(s) 63, 108
EcoO109I RGGNCCY 1 cut(s) 300
FaeI CATG 1 cut(s) 98
FaiI YATR 4 cut(s) 18, 41, 96, 273
FatI CATG 1 cut(s) 94
Fnu4HI GCNGC 1 cut(s) 47
FokI GGATG 1 cut(s) 131
Fsp4HI GCNGC 1 cut(s) 47
FspBI CTAG 1 cut(s) 183
GluI GCNGC 1 cut(s) 47
HaeIII GGCC 1 cut(s) 301
Hin1II CATG 1 cut(s) 98
HphI GGTGA 1 cut(s) 181
Hpy166II GTNNAC 2 cut(s) 215, 222
Hpy188I TCNGA 2 cut(s) 109, 207
Hpy8I GTNNAC 2 cut(s) 215, 222
HpyAV CCTTC 2 cut(s) 18, 267
HpyCH4III ACNGT 1 cut(s) 219
HpyCH4V TGCA 4 cut(s) 98, 215, 275, 285
HpyF10VI GCNNNNNNNGC 1 cut(s) 348
HpyF3I CTNAG 2 cut(s) 63, 108
Hsp92II CATG 1 cut(s) 98
LmnI GCTCC 2 cut(s) 198, 236
LpnPI CCDG 3 cut(s) 162, 283, 346
Lsp1109I GCAGC 1 cut(s) 33
LweI GCATC 1 cut(s) 338
MaeI CTAG 1 cut(s) 183
MboII GAAGA 3 cut(s) 3, 19, 172
MfeI CAATTG 1 cut(s) 280
MhlI GDGCHC 1 cut(s) 217
MluCI AATT 2 cut(s) 280, 337
MnlI CCTC 6 cut(s) 41, 47, 58, 180, 183, 227
MslI CAYNNNNRTG 1 cut(s) 99
MunI CAATTG 1 cut(s) 280
MwoI GCNNNNNNNGC 1 cut(s) 348
NlaIII CATG 1 cut(s) 98
PkrI GCNGC 1 cut(s) 48
PspPI GGNCC 1 cut(s) 300
RsaI GTAC 1 cut(s) 223
RsaNI GTAC 1 cut(s) 222
RseI CAYNNNNRTG 1 cut(s) 99
SatI GCNGC 1 cut(s) 47
Sau96I GGNCC 1 cut(s) 300
SduI GDGCHC 1 cut(s) 217
SetI ASST 8 cut(s) 69, 89, 151, 194, 203, 241, 247, 335
SfaNI GCATC 1 cut(s) 338
SmiMI CAYNNNNRTG 1 cut(s) 99
Sse9I AATT 2 cut(s) 280, 337
SspMI CTAG 1 cut(s) 183
TaaI ACNGT 1 cut(s) 219
TasI AATT 2 cut(s) 280, 337
TatI WGTACW 1 cut(s) 221
TscAI CASTG 3 cut(s) 82, 144, 222
TseI GCWGC 1 cut(s) 46
TspDTI ATGAA 2 cut(s) 135, 188
TspRI CASTG 3 cut(s) 82, 144, 222
VneI GTGCAC 1 cut(s) 213
XspI CTAG 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.