Prupe.1G131400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0013487
Physical Location & Seq
Forward (+)
10307704 .. 10309344
1641 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G131400.1

Sequence Viewer

Length: 330 bp
ATGTTGGAGAATTTGGGAGATCTCGGCCGGGTCTTGAAGGAGTCTCGTGGCGGCCGAGATTTGGAGCAGCCAGTGTCTTGGGCCGAATATGTGGCTGGAGTACTTGGAGGGCTACGGGGCAGGCCTGAGCCCGAGAATGGGCCCAAAAGGGGGCGGGGAAGCTTTAAAATTTTTGCCTTGTGTCTTTGCCGGGGAGGTCCCAAAGGACTTTGTTTGCCGTCTCCTTGTTGGTATGCCATCAATTGCAACATTCCCAACAGGCCCTTTGGGTTTTGTCCTTCCCCTGACTTTGGGTTGGGGTTGGGGGGGTGCCCCCCCGCCCCCCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

11.58

Weight (kDa)

8.79

Isoelectric Point (pI)

61.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013487)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65295
fragaria_vesca FvH4_6g00580
malus_domestica MD04G1244000.v1.1 MD12G1259800.v1.1
prunus_persica Prupe.1G131400_v2.0.a1 Prupe.6G360500_v2.0.a1
pyrus_communis pycom04g21490 pycom12g23790
rosa_chinensis RchiOBHm_Chr3g0447971
rosa_laevigata RLG00000025956
rosa_multiflora Rmu_sc0005969.1_g000009
rosa_roxburghii Rroxscaffold_6G00426160
rosa_rugosa Rorug02G0607500
rosa_samantha Rh3AG006700 Rh3BG006400 Rh3CG006600 Rh3DG007000
rosa_wichuraiana Rw3G000540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 309
AciI CCGC 3 cut(s) 51, 154, 318
AcoI YGGCCR 2 cut(s) 25, 52
AcsI RAATTY 2 cut(s) 10, 168
AfaI GTAC 1 cut(s) 102
AfiI CCNNNNNNNGG 6 cut(s) 61, 137, 138, 149, 150, 290
AgsI TTSAA 1 cut(s) 37
AluBI AGCT 1 cut(s) 162
AluI AGCT 1 cut(s) 162
Alw26I GTCTC 2 cut(s) 48, 225
Ama87I CYCGRG 1 cut(s) 131
AoxI GGCC 6 cut(s) 25, 52, 81, 122, 140, 260
ApaI GGGCCC 1 cut(s) 144
ApeKI GCWGC 1 cut(s) 67
ApoI RAATTY 2 cut(s) 10, 168
AspS9I GGNCC 5 cut(s) 81, 140, 141, 197, 261
AsuC2I CCSGG 2 cut(s) 29, 191
AvaI CYCGRG 1 cut(s) 131
AvaII GGWCC 1 cut(s) 197
BaeGI GKGCMC 2 cut(s) 144, 314
BanI GGYRCC 1 cut(s) 309
BanII GRGCYC 2 cut(s) 132, 144
BauI CACGAG 1 cut(s) 45
BbvI GCAGC 1 cut(s) 79
BccI CCATC 1 cut(s) 245
BceAI ACGGC 1 cut(s) 202
BcnI CCSGG 2 cut(s) 29, 191
BcoDI GTCTC 2 cut(s) 48, 225
BglII AGATCT 1 cut(s) 19
BisI GCNGC 2 cut(s) 52, 68
BlsI GCNGC 2 cut(s) 53, 69
BmcAI AGTACT 1 cut(s) 102
Bme1390I CCNGG 2 cut(s) 29, 191
Bme18I GGWCC 1 cut(s) 197
BmeT110I CYCGRG 1 cut(s) 131
BmgT120I GGNCC 5 cut(s) 81, 140, 141, 197, 261
BmiI GGNNCC 3 cut(s) 142, 199, 311
BmrFI CCNGG 2 cut(s) 29, 191
BpmI CTGGAG 1 cut(s) 117
Bpu10I CCTNAGC 1 cut(s) 126
BpuMI CCSGG 2 cut(s) 29, 191
BsaJI CCNNGG 1 cut(s) 190
Bsc4I CCNNNNNNNGG 6 cut(s) 61, 137, 138, 149, 150, 290
Bse1I ACTGG 1 cut(s) 71
BseDI CCNNGG 1 cut(s) 190
BseLI CCNNNNNNNGG 6 cut(s) 61, 137, 138, 149, 150, 290
BseMII CTCAG 1 cut(s) 117
BseNI ACTGG 1 cut(s) 71
BseSI GKGCMC 2 cut(s) 144, 314
BseX3I CGGCCG 2 cut(s) 25, 52
BseXI GCAGC 1 cut(s) 79
Bsh1285I CGRYCG 2 cut(s) 28, 55
BshFI GGCC 6 cut(s) 27, 54, 83, 124, 142, 262
BshNI GGYRCC 1 cut(s) 309
BsiEI CGRYCG 2 cut(s) 28, 55
BsiHKCI CYCGRG 1 cut(s) 131
BsiSI CCGG 2 cut(s) 28, 190
BslFI GGGAC 1 cut(s) 183
BslI CCNNNNNNNGG 6 cut(s) 61, 137, 138, 149, 150, 290
BsmAI GTCTC 2 cut(s) 48, 225
BsmBI CGTCTC 1 cut(s) 225
BsmFI GGGAC 1 cut(s) 183
BsnI GGCC 6 cut(s) 27, 54, 83, 124, 142, 262
BsoBI CYCGRG 1 cut(s) 131
Bsp120I GGGCCC 1 cut(s) 140
Bsp1286I GDGCHC 3 cut(s) 132, 144, 314
Bsp143I GATC 1 cut(s) 19
BspACI CCGC 3 cut(s) 51, 154, 318
BspANI GGCC 6 cut(s) 27, 54, 83, 124, 142, 262
BspCNI CTCAG 1 cut(s) 118
BspLI GGNNCC 3 cut(s) 142, 199, 311
BspT107I GGYRCC 1 cut(s) 309
BsrI ACTGG 1 cut(s) 71
BssECI CCNNGG 1 cut(s) 190
BssMI GATC 1 cut(s) 19
BssSI CACGAG 1 cut(s) 45
Bst2BI CACGAG 1 cut(s) 45
BstC8I GCNNGC 1 cut(s) 122
BstDEI CTNAG 1 cut(s) 126
BstKTI GATC 1 cut(s) 22
BstMAI GTCTC 2 cut(s) 48, 225
BstMBI GATC 1 cut(s) 19
BstMCI CGRYCG 2 cut(s) 28, 55
BstSCI CCNGG 2 cut(s) 27, 189
BstSLI GKGCMC 2 cut(s) 144, 314
BstV1I GCAGC 1 cut(s) 79
BstX2I RGATCY 1 cut(s) 19
BstXI CCANNNNNNTGG 1 cut(s) 78
BstYI RGATCY 1 cut(s) 19
BstZI CGGCCG 2 cut(s) 25, 52
BsuRI GGCC 6 cut(s) 27, 54, 83, 124, 142, 262
BtsIMutI CAGTG 1 cut(s) 78
Cac8I GCNNGC 1 cut(s) 122
Cfr13I GGNCC 5 cut(s) 81, 140, 141, 197, 261
Csp6I GTAC 1 cut(s) 101
CviQI GTAC 1 cut(s) 101
DdeI CTNAG 1 cut(s) 126
DpnI GATC 1 cut(s) 21
DpnII GATC 1 cut(s) 19
DraI TTTAAA 1 cut(s) 166
EaeI YGGCCR 2 cut(s) 25, 52
EagI CGGCCG 2 cut(s) 25, 52
EclXI CGGCCG 2 cut(s) 25, 52
Eco147I AGGCCT 1 cut(s) 124
Eco24I GRGCYC 2 cut(s) 132, 144
Eco47I GGWCC 1 cut(s) 197
Eco52I CGGCCG 2 cut(s) 25, 52
Eco88I CYCGRG 1 cut(s) 131
EcoO109I RGGNCCY 2 cut(s) 197, 261
EcoT38I GRGCYC 2 cut(s) 132, 144
Esp3I CGTCTC 1 cut(s) 225
FaiI YATR 2 cut(s) 90, 234
FaqI GGGAC 1 cut(s) 183
FauI CCCGC 2 cut(s) 147, 325
Fnu4HI GCNGC 2 cut(s) 52, 68
FriOI GRGCYC 2 cut(s) 132, 144
Fsp4HI GCNGC 2 cut(s) 52, 68
GluI GCNGC 2 cut(s) 52, 68
GsuI CTGGAG 1 cut(s) 117
HaeIII GGCC 6 cut(s) 27, 54, 83, 124, 142, 262
HapII CCGG 2 cut(s) 28, 190
HindIII AAGCTT 1 cut(s) 160
HinfI GANTC 1 cut(s) 41
HpaII CCGG 2 cut(s) 28, 190
Hpy188III TCNNGA 1 cut(s) 34
HpyAV CCTTC 2 cut(s) 31, 288
HpyCH4V TGCA 1 cut(s) 246
HpyF3I CTNAG 1 cut(s) 126
Kzo9I GATC 1 cut(s) 19
LmnI GCTCC 1 cut(s) 64
LpnPI CCDG 8 cut(s) 41, 81, 84, 106, 138, 203, 244, 297
Lsp1109I GCAGC 1 cut(s) 79
MalI GATC 1 cut(s) 21
MboI GATC 1 cut(s) 19
MfeI CAATTG 1 cut(s) 241
MflI RGATCY 1 cut(s) 19
MhlI GDGCHC 3 cut(s) 132, 144, 314
MluCI AATT 3 cut(s) 10, 168, 241
MlyI GAGTC 1 cut(s) 50
MnlI CCTC 2 cut(s) 101, 188
MseI TTAA 1 cut(s) 165
MspI CCGG 2 cut(s) 28, 190
MspR9I CCNGG 2 cut(s) 29, 191
MunI CAATTG 1 cut(s) 241
NciI CCSGG 2 cut(s) 29, 191
NdeII GATC 1 cut(s) 19
NlaIV GGNNCC 3 cut(s) 142, 199, 311
NmeAIII GCCGAG 1 cut(s) 80
PceI AGGCCT 1 cut(s) 124
PcsI WCGNNNNNNNCGW 1 cut(s) 52
PkrI GCNGC 2 cut(s) 53, 69
PleI GAGTC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 49
PpuMI RGGWCCY 1 cut(s) 197
Psp5II RGGWCCY 1 cut(s) 197
PspN4I GGNNCC 3 cut(s) 142, 199, 311
PspOMI GGGCCC 1 cut(s) 140
PspPI GGNCC 5 cut(s) 81, 140, 141, 197, 261
PspPPI RGGWCCY 1 cut(s) 197
PsuI RGATCY 1 cut(s) 19
RsaI GTAC 1 cut(s) 102
RsaNI GTAC 1 cut(s) 101
SaqAI TTAA 1 cut(s) 165
SatI GCNGC 2 cut(s) 52, 68
Sau3AI GATC 1 cut(s) 19
Sau96I GGNCC 5 cut(s) 81, 140, 141, 197, 261
ScaI AGTACT 1 cut(s) 102
SchI GAGTC 1 cut(s) 50
ScrFI CCNGG 2 cut(s) 29, 191
SduI GDGCHC 3 cut(s) 132, 144, 314
SetI ASST 2 cut(s) 164, 199
SinI GGWCC 1 cut(s) 197
Sse9I AATT 3 cut(s) 10, 168, 241
SseBI AGGCCT 1 cut(s) 124
SsiI CCGC 3 cut(s) 51, 154, 318
StuI AGGCCT 1 cut(s) 124
StyD4I CCNGG 2 cut(s) 27, 189
TasI AATT 3 cut(s) 10, 168, 241
TatI WGTACW 1 cut(s) 100
TauI GCSGC 1 cut(s) 54
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TscAI CASTG 1 cut(s) 78
TseI GCWGC 1 cut(s) 67
TspRI CASTG 1 cut(s) 78
VpaK11BI GGWCC 1 cut(s) 197
XapI RAATTY 2 cut(s) 10, 168
ZrmI AGTACT 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.