pycom04g21490

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0013487
Physical Location & Seq
Reverse (-)
22631622 .. 22632123
502 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g21490.2

Sequence Viewer

Length: 360 bp
ATGATGCCTGCTCGTGCTCATGGGGTCACCTTCTCTCTCCTCCTACTGCTGTCCTTTTTGGCTACCGCTATCTCCACCACTGAAGCAGCAAGCTTAGACCATGCCAATGGGTCTGCAGCTGTGGGGCCACTGGTGCCACTGATCGGAGCTGAAAAGATGAATACTTTGGTGATGAATGAGACCAGGAGGAAGTTGGGGAGCTTCCGGATTTGTGCATTGTGTACTTGTTGTGGAGGTGCCAAAGGTCTTTGCTTGCCTTCTCCTTGTTGCTATGCCATCAATTGCAACATTCCAAACAGGCCTTTCGGTTTCTGTTCTTTCACACCCAAGACCTGTAATTGCTTTGGATGCCGTATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

12.54

Weight (kDa)

8.81

Isoelectric Point (pI)

38.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013487)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65295
fragaria_vesca FvH4_6g00580
malus_domestica MD04G1244000.v1.1 MD12G1259800.v1.1
prunus_persica Prupe.1G131400_v2.0.a1 Prupe.6G360500_v2.0.a1
pyrus_communis pycom04g21490 pycom12g23790
rosa_chinensis RchiOBHm_Chr3g0447971
rosa_laevigata RLG00000025956
rosa_multiflora Rmu_sc0005969.1_g000009
rosa_roxburghii Rroxscaffold_6G00426160
rosa_rugosa Rorug02G0607500
rosa_samantha Rh3AG006700 Rh3BG006400 Rh3CG006600 Rh3DG007000
rosa_wichuraiana Rw3G000540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 133, 236
AccIII TCCGGA 1 cut(s) 204
AciI CCGC 1 cut(s) 66
AcuI CTGAAG 1 cut(s) 102
AfaI GTAC 1 cut(s) 223
AfiI CCNNNNNNNGG 1 cut(s) 143
AjnI CCWGG 1 cut(s) 182
AluBI AGCT 4 cut(s) 93, 119, 149, 201
AluI AGCT 4 cut(s) 93, 119, 149, 201
Alw21I GWGCWC 1 cut(s) 19
Alw26I GTCTC 1 cut(s) 173
Aor13HI TCCGGA 1 cut(s) 204
AoxI GGCC 2 cut(s) 125, 299
ApeKI GCWGC 2 cut(s) 86, 116
AspS9I GGNCC 1 cut(s) 125
AsuHPI GGTGA 2 cut(s) 19, 181
BanI GGYRCC 2 cut(s) 133, 236
BauI CACGAG 1 cut(s) 12
Bbv12I GWGCWC 1 cut(s) 19
BbvI GCAGC 2 cut(s) 98, 128
BccI CCATC 1 cut(s) 284
BceAI ACGGC 1 cut(s) 336
BciT130I CCWGG 1 cut(s) 184
BcoDI GTCTC 1 cut(s) 173
BfmI CTRYAG 1 cut(s) 114
BisI GCNGC 2 cut(s) 87, 117
BlsI GCNGC 2 cut(s) 88, 118
Bme1390I CCNGG 1 cut(s) 184
BmgT120I GGNCC 1 cut(s) 125
BmiI GGNNCC 3 cut(s) 126, 135, 238
BmrFI CCNGG 1 cut(s) 184
BmsI GCATC 1 cut(s) 338
BsaI GGTCTC 1 cut(s) 173
BsaWI WCCGGW 1 cut(s) 204
Bsc4I CCNNNNNNNGG 1 cut(s) 143
Bse1I ACTGG 1 cut(s) 135
BseAI TCCGGA 1 cut(s) 204
BseBI CCWGG 1 cut(s) 184
BseGI GGATG 1 cut(s) 353
BseLI CCNNNNNNNGG 1 cut(s) 143
BseNI ACTGG 1 cut(s) 135
BseRI GAGGAG 1 cut(s) 29
BseXI GCAGC 2 cut(s) 98, 128
BshFI GGCC 2 cut(s) 127, 301
BshNI GGYRCC 2 cut(s) 133, 236
BsiHKAI GWGCWC 1 cut(s) 19
BsiSI CCGG 1 cut(s) 205
BslI CCNNNNNNNGG 1 cut(s) 143
BsmAI GTCTC 1 cut(s) 173
BsnI GGCC 2 cut(s) 127, 301
Bso31I GGTCTC 1 cut(s) 173
Bsp1286I GDGCHC 1 cut(s) 19
Bsp13I TCCGGA 1 cut(s) 204
Bsp143I GATC 1 cut(s) 141
BspACI CCGC 1 cut(s) 66
BspANI GGCC 2 cut(s) 127, 301
BspEI TCCGGA 1 cut(s) 204
BspLI GGNNCC 3 cut(s) 126, 135, 238
BspMAI CTGCAG 1 cut(s) 118
BspT107I GGYRCC 2 cut(s) 133, 236
BspTNI GGTCTC 1 cut(s) 173
BsrI ACTGG 1 cut(s) 135
BssMI GATC 1 cut(s) 141
BssSI CACGAG 1 cut(s) 12
Bst2BI CACGAG 1 cut(s) 12
Bst2UI CCWGG 1 cut(s) 184
BstC8I GCNNGC 3 cut(s) 9, 91, 254
BstDEI CTNAG 1 cut(s) 94
BstEII GGTNACC 1 cut(s) 25
BstF5I GGATG 1 cut(s) 353
BstKTI GATC 1 cut(s) 144
BstMAI GTCTC 1 cut(s) 173
BstMBI GATC 1 cut(s) 141
BstMWI GCNNNNNNNGC 2 cut(s) 133, 348
BstNI CCWGG 1 cut(s) 184
BstPI GGTNACC 1 cut(s) 25
BstSCI CCNGG 1 cut(s) 182
BstSFI CTRYAG 1 cut(s) 114
BstV1I GCAGC 2 cut(s) 98, 128
BstXI CCANNNNNNTGG 1 cut(s) 107
BsuRI GGCC 2 cut(s) 127, 301
BtsCI GGATG 1 cut(s) 353
BtsIMutI CAGTG 3 cut(s) 78, 128, 137
Cac8I GCNNGC 3 cut(s) 9, 91, 254
Cfr13I GGNCC 1 cut(s) 125
Csp6I GTAC 1 cut(s) 222
CviAII CATG 2 cut(s) 20, 101
CviJI RGCY 7 cut(s) 62, 93, 119, 127, 149, 201, 301
CviKI_1 RGCY 7 cut(s) 62, 93, 119, 127, 149, 201, 301
CviQI GTAC 1 cut(s) 222
DdeI CTNAG 1 cut(s) 94
DpnI GATC 1 cut(s) 143
DpnII GATC 1 cut(s) 141
Eco147I AGGCCT 1 cut(s) 301
Eco31I GGTCTC 1 cut(s) 173
Eco57I CTGAAG 1 cut(s) 102
Eco91I GGTNACC 1 cut(s) 25
EcoO65I GGTNACC 1 cut(s) 25
EcoRII CCWGG 1 cut(s) 182
FaeI CATG 2 cut(s) 23, 104
FaiI YATR 3 cut(s) 21, 102, 273
FatI CATG 2 cut(s) 19, 100
Fnu4HI GCNGC 2 cut(s) 87, 117
Fsp4HI GCNGC 2 cut(s) 87, 117
GluI GCNGC 2 cut(s) 87, 117
HaeIII GGCC 2 cut(s) 127, 301
HapII CCGG 1 cut(s) 205
Hin1II CATG 2 cut(s) 23, 104
HindIII AAGCTT 1 cut(s) 91
HpaII CCGG 1 cut(s) 205
HphI GGTGA 2 cut(s) 19, 181
Hpy166II GTNNAC 1 cut(s) 222
Hpy188I TCNGA 1 cut(s) 146
Hpy188III TCNNGA 1 cut(s) 205
Hpy8I GTNNAC 1 cut(s) 222
HpyAV CCTTC 2 cut(s) 40, 267
HpyCH4V TGCA 3 cut(s) 116, 215, 285
HpyF10VI GCNNNNNNNGC 2 cut(s) 133, 348
HpyF3I CTNAG 1 cut(s) 94
Hsp92II CATG 2 cut(s) 23, 104
Kpn2I TCCGGA 1 cut(s) 204
Kzo9I GATC 1 cut(s) 141
LmnI GCTCC 2 cut(s) 146, 198
LpnPI CCDG 7 cut(s) 21, 116, 169, 196, 218, 283, 346
Lsp1109I GCAGC 2 cut(s) 98, 128
LweI GCATC 1 cut(s) 338
MaeIII GTNAC 1 cut(s) 25
MalI GATC 1 cut(s) 143
MboI GATC 1 cut(s) 141
MfeI CAATTG 1 cut(s) 280
MhlI GDGCHC 1 cut(s) 19
MluCI AATT 2 cut(s) 280, 337
MnlI CCTC 3 cut(s) 50, 180, 227
MroI TCCGGA 1 cut(s) 204
MslI CAYNNNNRTG 1 cut(s) 105
MspA1I CMGCKG 1 cut(s) 119
MspI CCGG 1 cut(s) 205
MspR9I CCNGG 1 cut(s) 184
MunI CAATTG 1 cut(s) 280
MvaI CCWGG 1 cut(s) 184
MwoI GCNNNNNNNGC 2 cut(s) 133, 348
NdeII GATC 1 cut(s) 141
NlaIII CATG 2 cut(s) 23, 104
NlaIV GGNNCC 3 cut(s) 126, 135, 238
NmuCI GTSAC 1 cut(s) 25
PceI AGGCCT 1 cut(s) 301
PkrI GCNGC 2 cut(s) 88, 118
Psp6I CCWGG 1 cut(s) 182
PspEI GGTNACC 1 cut(s) 25
PspGI CCWGG 1 cut(s) 182
PspN4I GGNNCC 3 cut(s) 126, 135, 238
PspPI GGNCC 1 cut(s) 125
PstI CTGCAG 1 cut(s) 118
PvuII CAGCTG 1 cut(s) 119
RsaI GTAC 1 cut(s) 223
RsaNI GTAC 1 cut(s) 222
RseI CAYNNNNRTG 1 cut(s) 105
SatI GCNGC 2 cut(s) 87, 117
Sau3AI GATC 1 cut(s) 141
Sau96I GGNCC 1 cut(s) 125
ScrFI CCNGG 1 cut(s) 184
SduI GDGCHC 1 cut(s) 19
SetI ASST 8 cut(s) 32, 95, 121, 151, 203, 238, 247, 335
SfaNI GCATC 1 cut(s) 338
SfcI CTRYAG 1 cut(s) 114
SmiMI CAYNNNNRTG 1 cut(s) 105
Sse9I AATT 2 cut(s) 280, 337
SseBI AGGCCT 1 cut(s) 301
SsiI CCGC 1 cut(s) 66
StuI AGGCCT 1 cut(s) 301
StyD4I CCNGG 1 cut(s) 182
TasI AATT 2 cut(s) 280, 337
TatI WGTACW 1 cut(s) 221
TscAI CASTG 3 cut(s) 85, 135, 144
TseFI GTSAC 1 cut(s) 25
TseI GCWGC 2 cut(s) 86, 116
Tsp45I GTSAC 1 cut(s) 25
TspDTI ATGAA 2 cut(s) 173, 188
TspRI CASTG 3 cut(s) 85, 135, 144
XcmI CCANNNNNNNNNTGG 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.