Rh3AG006700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0013487
Physical Location & Seq
Forward (+)
450223 .. 451733
1511 bp
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UTR
Exon/CDS
Intron
Rh3AG006700.1

Sequence Viewer

Length: 408 bp
ATGATGCCTTCTTCTTATGGGGTCATCCTCTCTCTCATATTGCTGCTCTTTTTGGCTACTGAGGTCACTAGCACTGAACCAAGCTTAACCCATGCAAATGGGTCTGACAAAGTGGATGAACCACCATTTGTGCCACTGATAGAAGCTCAAAAGTTGAAGACTTTGGTGTTGAATGAGACTAGAAGAAGGTTGGGGAGCTTTCAGATTTGTGCACTGTGTACTTGCTGTGGAGGAGCTAAAGGTCTTTGCTTGCCTTCCCCTTGTTGCTATGCAATCAATTGCAACATTCCCAACAGGCCCTTTGGTTTCTGTTCTTTCACTCCCAAGACCTGTGCAGCCAACCCTATTATTAAGGTAGCTGGAAGTTGGGCAGGGACAGTGAAGCCTTGGCCAAATGTTAAGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

14.53

Weight (kDa)

8.88

Isoelectric Point (pI)

50.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7866 PF25268 66 - 112 3.3e-20 Domain of unknown function (DUF7866)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013487)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65295
fragaria_vesca FvH4_6g00580
malus_domestica MD04G1244000.v1.1 MD12G1259800.v1.1
prunus_persica Prupe.1G131400_v2.0.a1 Prupe.6G360500_v2.0.a1
pyrus_communis pycom04g21490 pycom12g23790
rosa_chinensis RchiOBHm_Chr3g0447971
rosa_laevigata RLG00000025956
rosa_multiflora Rmu_sc0005969.1_g000009
rosa_roxburghii Rroxscaffold_6G00426160
rosa_rugosa Rorug02G0607500
rosa_samantha Rh3AG006700 Rh3BG006400 Rh3CG006600 Rh3DG007000
rosa_wichuraiana Rw3G000540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 389
AfaI GTAC 1 cut(s) 220
AgsI TTSAA 2 cut(s) 157, 172
AluBI AGCT 5 cut(s) 84, 146, 198, 236, 359
AluI AGCT 5 cut(s) 84, 146, 198, 236, 359
Alw21I GWGCWC 1 cut(s) 214
Alw26I GTCTC 1 cut(s) 170
Alw44I GTGCAC 1 cut(s) 210
AoxI GGCC 2 cut(s) 296, 389
ApaLI GTGCAC 1 cut(s) 210
ApeKI GCWGC 2 cut(s) 43, 335
AspS9I GGNCC 1 cut(s) 297
BaeGI GKGCMC 1 cut(s) 214
BalI TGGCCA 1 cut(s) 391
BbsI GAAGAC 1 cut(s) 164
Bbv12I GWGCWC 1 cut(s) 214
BbvI GCAGC 2 cut(s) 30, 347
BcoDI GTCTC 1 cut(s) 170
BfaI CTAG 2 cut(s) 69, 180
BisI GCNGC 2 cut(s) 44, 336
BlsI GCNGC 2 cut(s) 45, 337
BmgT120I GGNCC 1 cut(s) 297
BpiI GAAGAC 1 cut(s) 164
BsaJI CCNNGG 1 cut(s) 386
BseDI CCNNGG 1 cut(s) 386
BseGI GGATG 2 cut(s) 24, 121
BseMII CTCAG 1 cut(s) 51
BseRI GAGGAG 1 cut(s) 246
BseSI GKGCMC 1 cut(s) 214
BseXI GCAGC 2 cut(s) 30, 347
BsgI GTGCAG 1 cut(s) 354
BshFI GGCC 2 cut(s) 298, 391
BsiHKAI GWGCWC 1 cut(s) 214
BslFI GGGAC 1 cut(s) 388
BsmAI GTCTC 1 cut(s) 170
BsmFI GGGAC 1 cut(s) 388
BsnI GGCC 2 cut(s) 298, 391
Bsp1286I GDGCHC 1 cut(s) 214
BspANI GGCC 2 cut(s) 298, 391
BspCNI CTCAG 1 cut(s) 52
BssECI CCNNGG 1 cut(s) 386
BssT1I CCWWGG 1 cut(s) 386
Bst4CI ACNGT 2 cut(s) 216, 379
BstC8I GCNNGC 1 cut(s) 251
BstDEI CTNAG 1 cut(s) 60
BstF5I GGATG 2 cut(s) 24, 121
BstMAI GTCTC 1 cut(s) 170
BstSLI GKGCMC 1 cut(s) 214
BstV1I GCAGC 2 cut(s) 30, 347
BstV2I GAAGAC 1 cut(s) 164
BstXI CCANNNNNNTGG 1 cut(s) 98
BsuRI GGCC 2 cut(s) 298, 391
BtsCI GGATG 2 cut(s) 24, 121
BtsIMutI CAGTG 4 cut(s) 72, 134, 212, 384
Cac8I GCNNGC 1 cut(s) 251
Cfr13I GGNCC 1 cut(s) 297
Csp6I GTAC 1 cut(s) 219
CviAII CATG 1 cut(s) 92
CviQI GTAC 1 cut(s) 219
DdeI CTNAG 1 cut(s) 60
EaeI YGGCCR 1 cut(s) 389
Eco130I CCWWGG 1 cut(s) 386
EcoO109I RGGNCCY 1 cut(s) 297
EcoT14I CCWWGG 1 cut(s) 386
ErhI CCWWGG 1 cut(s) 386
FaeI CATG 1 cut(s) 95
FaiI YATR 4 cut(s) 18, 38, 93, 270
FaqI GGGAC 1 cut(s) 388
FatI CATG 1 cut(s) 91
Fnu4HI GCNGC 2 cut(s) 44, 336
FokI GGATG 2 cut(s) 11, 128
Fsp4HI GCNGC 2 cut(s) 44, 336
FspBI CTAG 2 cut(s) 69, 180
GluI GCNGC 2 cut(s) 44, 336
HaeIII GGCC 2 cut(s) 298, 391
Hin1II CATG 1 cut(s) 95
HindIII AAGCTT 1 cut(s) 82
Hpy166II GTNNAC 2 cut(s) 212, 219
Hpy188I TCNGA 2 cut(s) 106, 204
Hpy8I GTNNAC 2 cut(s) 212, 219
HpyAV CCTTC 3 cut(s) 18, 180, 264
HpyCH4III ACNGT 2 cut(s) 216, 379
HpyCH4V TGCA 5 cut(s) 95, 212, 272, 282, 335
HpyF3I CTNAG 1 cut(s) 60
Hsp92II CATG 1 cut(s) 95
LmnI GCTCC 2 cut(s) 195, 233
LpnPI CCDG 4 cut(s) 280, 343, 345, 357
Lsp1109I GCAGC 2 cut(s) 30, 347
MaeI CTAG 2 cut(s) 69, 180
MaeIII GTNAC 1 cut(s) 64
MboII GAAGA 3 cut(s) 3, 169, 195
MfeI CAATTG 1 cut(s) 277
MhlI GDGCHC 1 cut(s) 214
MlsI TGGCCA 1 cut(s) 391
MluCI AATT 1 cut(s) 277
MluNI TGGCCA 1 cut(s) 391
MnlI CCTC 3 cut(s) 38, 55, 224
Mox20I TGGCCA 1 cut(s) 391
MscI TGGCCA 1 cut(s) 391
MseI TTAA 3 cut(s) 86, 351, 399
MslI CAYNNNNRTG 1 cut(s) 96
Msp20I TGGCCA 1 cut(s) 391
MunI CAATTG 1 cut(s) 277
NlaIII CATG 1 cut(s) 95
NmuCI GTSAC 1 cut(s) 64
PkrI GCNGC 2 cut(s) 45, 337
PspPI GGNCC 1 cut(s) 297
RsaI GTAC 1 cut(s) 220
RsaNI GTAC 1 cut(s) 219
RseI CAYNNNNRTG 1 cut(s) 96
SaqAI TTAA 3 cut(s) 86, 351, 399
SatI GCNGC 2 cut(s) 44, 336
Sau96I GGNCC 1 cut(s) 297
SduI GDGCHC 1 cut(s) 214
SmiMI CAYNNNNRTG 1 cut(s) 96
Sse9I AATT 1 cut(s) 277
SspMI CTAG 2 cut(s) 69, 180
StyI CCWWGG 1 cut(s) 386
TaaI ACNGT 2 cut(s) 216, 379
TasI AATT 1 cut(s) 277
TatI WGTACW 1 cut(s) 218
Tru1I TTAA 3 cut(s) 86, 351, 399
Tru9I TTAA 3 cut(s) 86, 351, 399
TscAI CASTG 4 cut(s) 79, 141, 219, 384
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 2 cut(s) 43, 335
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 1 cut(s) 132
TspRI CASTG 4 cut(s) 79, 141, 219, 384
VneI GTGCAC 1 cut(s) 210
XspI CTAG 2 cut(s) 69, 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.