Rw3G000540

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0013487
Physical Location & Seq
Forward (+)
452735 .. 454097
1363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G000540.1

Sequence Viewer

Length: 357 bp
ATGATGCCTTCTTCTTATGGGGTCATCCTCTCTCTCATATTGCTGCTCTTTTTGGCTACTGTGGTCACTAGCACTGAACCAAGCTTAACCCATGCAAATGGGTCTGACAAAGTGGATGAACCGCCATTTGTGCCACTGATAGAAGCTGAAAAGTTGAAGACTTTGGTGTTGAATGAGACTAGAAGAAGGTTGGGGAGCTTTCAGATTTGTGCACTGTGTACTTGCTGTGGAGGAGCTAAAGGTCTTTGCTTGCCTTCCCCTTGTTGCTATGCAATCAATTGCAACATTCCCAACAGGCCCTTTGGTTTCTGTTCTTTCACTCCCAAGACCTGTAATTGCTTTGGATGCCATTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

12.78

Weight (kDa)

7.98

Isoelectric Point (pI)

63.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7866 PF25268 66 - 117 4.2e-23 Domain of unknown function (DUF7866)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013487)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65295
fragaria_vesca FvH4_6g00580
malus_domestica MD04G1244000.v1.1 MD12G1259800.v1.1
prunus_persica Prupe.1G131400_v2.0.a1 Prupe.6G360500_v2.0.a1
pyrus_communis pycom04g21490 pycom12g23790
rosa_chinensis RchiOBHm_Chr3g0447971
rosa_laevigata RLG00000025956
rosa_multiflora Rmu_sc0005969.1_g000009
rosa_roxburghii Rroxscaffold_6G00426160
rosa_rugosa Rorug02G0607500
rosa_samantha Rh3AG006700 Rh3BG006400 Rh3CG006600 Rh3DG007000
rosa_wichuraiana Rw3G000540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 122
AfaI GTAC 1 cut(s) 220
AgsI TTSAA 2 cut(s) 157, 172
AluBI AGCT 4 cut(s) 84, 146, 198, 236
AluI AGCT 4 cut(s) 84, 146, 198, 236
Alw21I GWGCWC 1 cut(s) 214
Alw26I GTCTC 1 cut(s) 170
Alw44I GTGCAC 1 cut(s) 210
AoxI GGCC 1 cut(s) 296
ApaLI GTGCAC 1 cut(s) 210
ApeKI GCWGC 1 cut(s) 43
AspS9I GGNCC 1 cut(s) 297
BaeGI GKGCMC 1 cut(s) 214
BbsI GAAGAC 1 cut(s) 164
Bbv12I GWGCWC 1 cut(s) 214
BbvI GCAGC 1 cut(s) 30
BcoDI GTCTC 1 cut(s) 170
BfaI CTAG 2 cut(s) 69, 180
BisI GCNGC 1 cut(s) 44
BlsI GCNGC 1 cut(s) 45
BmgT120I GGNCC 1 cut(s) 297
BmsI GCATC 1 cut(s) 335
BpiI GAAGAC 1 cut(s) 164
BseGI GGATG 3 cut(s) 24, 121, 350
BseRI GAGGAG 1 cut(s) 246
BseSI GKGCMC 1 cut(s) 214
BseXI GCAGC 1 cut(s) 30
BshFI GGCC 1 cut(s) 298
BsiHKAI GWGCWC 1 cut(s) 214
BsmAI GTCTC 1 cut(s) 170
BsnI GGCC 1 cut(s) 298
Bsp1286I GDGCHC 1 cut(s) 214
BspACI CCGC 1 cut(s) 122
BspANI GGCC 1 cut(s) 298
Bst4CI ACNGT 2 cut(s) 61, 216
BstC8I GCNNGC 1 cut(s) 251
BstF5I GGATG 3 cut(s) 24, 121, 350
BstMAI GTCTC 1 cut(s) 170
BstMWI GCNNNNNNNGC 2 cut(s) 130, 345
BstSLI GKGCMC 1 cut(s) 214
BstV1I GCAGC 1 cut(s) 30
BstV2I GAAGAC 1 cut(s) 164
BstXI CCANNNNNNTGG 1 cut(s) 98
BsuRI GGCC 1 cut(s) 298
BtsCI GGATG 3 cut(s) 24, 121, 350
BtsIMutI CAGTG 3 cut(s) 72, 134, 212
Cac8I GCNNGC 1 cut(s) 251
Cfr13I GGNCC 1 cut(s) 297
Csp6I GTAC 1 cut(s) 219
CviAII CATG 1 cut(s) 92
CviJI RGCY 6 cut(s) 56, 84, 146, 198, 236, 298
CviKI_1 RGCY 6 cut(s) 56, 84, 146, 198, 236, 298
CviQI GTAC 1 cut(s) 219
EcoO109I RGGNCCY 1 cut(s) 297
FaeI CATG 1 cut(s) 95
FaiI YATR 4 cut(s) 18, 38, 93, 270
FatI CATG 1 cut(s) 91
Fnu4HI GCNGC 1 cut(s) 44
FokI GGATG 2 cut(s) 11, 128
Fsp4HI GCNGC 1 cut(s) 44
FspBI CTAG 2 cut(s) 69, 180
GluI GCNGC 1 cut(s) 44
HaeIII GGCC 1 cut(s) 298
Hin1II CATG 1 cut(s) 95
HindIII AAGCTT 1 cut(s) 82
Hpy166II GTNNAC 2 cut(s) 212, 219
Hpy188I TCNGA 2 cut(s) 106, 204
Hpy8I GTNNAC 2 cut(s) 212, 219
HpyAV CCTTC 3 cut(s) 18, 180, 264
HpyCH4III ACNGT 2 cut(s) 61, 216
HpyCH4V TGCA 4 cut(s) 95, 212, 272, 282
HpyF10VI GCNNNNNNNGC 2 cut(s) 130, 345
Hsp92II CATG 1 cut(s) 95
LmnI GCTCC 2 cut(s) 195, 233
LpnPI CCDG 2 cut(s) 280, 343
Lsp1109I GCAGC 1 cut(s) 30
LweI GCATC 1 cut(s) 335
MaeI CTAG 2 cut(s) 69, 180
MaeIII GTNAC 1 cut(s) 64
MboII GAAGA 3 cut(s) 3, 169, 195
MfeI CAATTG 1 cut(s) 277
MhlI GDGCHC 1 cut(s) 214
MluCI AATT 2 cut(s) 277, 334
MnlI CCTC 2 cut(s) 38, 224
MseI TTAA 1 cut(s) 86
MslI CAYNNNNRTG 1 cut(s) 96
MunI CAATTG 1 cut(s) 277
MwoI GCNNNNNNNGC 2 cut(s) 130, 345
NlaIII CATG 1 cut(s) 95
NmuCI GTSAC 1 cut(s) 64
PkrI GCNGC 1 cut(s) 45
PspPI GGNCC 1 cut(s) 297
RsaI GTAC 1 cut(s) 220
RsaNI GTAC 1 cut(s) 219
RseI CAYNNNNRTG 1 cut(s) 96
SaqAI TTAA 1 cut(s) 86
SatI GCNGC 1 cut(s) 44
Sau96I GGNCC 1 cut(s) 297
SduI GDGCHC 1 cut(s) 214
SetI ASST 7 cut(s) 86, 148, 191, 200, 238, 244, 332
SfaNI GCATC 1 cut(s) 335
SmiMI CAYNNNNRTG 1 cut(s) 96
Sse9I AATT 2 cut(s) 277, 334
SsiI CCGC 1 cut(s) 122
SspMI CTAG 2 cut(s) 69, 180
TaaI ACNGT 2 cut(s) 61, 216
TasI AATT 2 cut(s) 277, 334
TatI WGTACW 1 cut(s) 218
Tru1I TTAA 1 cut(s) 86
Tru9I TTAA 1 cut(s) 86
TscAI CASTG 3 cut(s) 79, 141, 219
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 1 cut(s) 43
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 1 cut(s) 132
TspRI CASTG 3 cut(s) 79, 141, 219
VneI GTGCAC 1 cut(s) 210
XspI CTAG 2 cut(s) 69, 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.