pycom12g23790

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0013487
Physical Location & Seq
Reverse (-)
24275064 .. 24275560
497 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g23790.1

Sequence Viewer

Length: 360 bp
ATGATGCCTGCTCATGCTCATGGGGTCACCTTCTCTCTCCTCCTACTGCTGCTCTTTTTGTCTACTGCTATCTCCCCTACTGAAGCAGCAAGCTTAACCCATGCCAATGGGTCTGCAGCTGTGGAGCCACTTGTGCCACTGATTGGAGCTGAAACGATGAAGACTTTGGTGATGACTGAGACCAGAAGGAAGTTGGGGAGCTTTCGGATTTGTGCATTGTGTACTTGTTGTGGAGGTGCCAAAGGTCTTTGCTTGCCTTCTCCTTGTTGCTATGCCATCAATTGCAACATTCCGAACAGGCCTTTTGGTTTCTGTTCTTTCACACCCAAGACCTGTAATTGCTTTGGATGCCATATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

12.57

Weight (kDa)

8.5

Isoelectric Point (pI)

49.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7866 PF25268 67 - 118 4.5e-23 Domain of unknown function (DUF7866)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013487)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65295
fragaria_vesca FvH4_6g00580
malus_domestica MD04G1244000.v1.1 MD12G1259800.v1.1
prunus_persica Prupe.1G131400_v2.0.a1 Prupe.6G360500_v2.0.a1
pyrus_communis pycom04g21490 pycom12g23790
rosa_chinensis RchiOBHm_Chr3g0447971
rosa_laevigata RLG00000025956
rosa_multiflora Rmu_sc0005969.1_g000009
rosa_roxburghii Rroxscaffold_6G00426160
rosa_rugosa Rorug02G0607500
rosa_samantha Rh3AG006700 Rh3BG006400 Rh3CG006600 Rh3DG007000
rosa_wichuraiana Rw3G000540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 236
AccB7I CCANNNNNTGG 1 cut(s) 143
AccI GTMKAC 1 cut(s) 62
AcuI CTGAAG 1 cut(s) 102
AfaI GTAC 1 cut(s) 223
AfiI CCNNNNNNNGG 1 cut(s) 143
AluBI AGCT 4 cut(s) 93, 119, 149, 201
AluI AGCT 4 cut(s) 93, 119, 149, 201
Alw26I GTCTC 1 cut(s) 173
AoxI GGCC 1 cut(s) 299
ApeKI GCWGC 3 cut(s) 49, 86, 116
AsuHPI GGTGA 2 cut(s) 19, 181
BanI GGYRCC 1 cut(s) 236
BbsI GAAGAC 1 cut(s) 167
BbvI GCAGC 3 cut(s) 36, 98, 128
BccI CCATC 1 cut(s) 284
BcoDI GTCTC 1 cut(s) 173
BfmI CTRYAG 1 cut(s) 114
BisI GCNGC 3 cut(s) 50, 87, 117
BlsI GCNGC 3 cut(s) 51, 88, 118
BmiI GGNNCC 2 cut(s) 126, 238
BmsI GCATC 1 cut(s) 338
BpiI GAAGAC 1 cut(s) 167
BsaI GGTCTC 1 cut(s) 173
Bsc4I CCNNNNNNNGG 1 cut(s) 143
BseGI GGATG 1 cut(s) 353
BseLI CCNNNNNNNGG 1 cut(s) 143
BseMII CTCAG 1 cut(s) 168
BseRI GAGGAG 1 cut(s) 29
BseXI GCAGC 3 cut(s) 36, 98, 128
BshFI GGCC 1 cut(s) 301
BshNI GGYRCC 1 cut(s) 236
BslI CCNNNNNNNGG 1 cut(s) 143
BsmAI GTCTC 1 cut(s) 173
BsnI GGCC 1 cut(s) 301
Bso31I GGTCTC 1 cut(s) 173
BspANI GGCC 1 cut(s) 301
BspCNI CTCAG 1 cut(s) 169
BspLI GGNNCC 2 cut(s) 126, 238
BspMAI CTGCAG 1 cut(s) 118
BspT107I GGYRCC 1 cut(s) 236
BspTNI GGTCTC 1 cut(s) 173
BstC8I GCNNGC 3 cut(s) 9, 91, 254
BstDEI CTNAG 1 cut(s) 177
BstEII GGTNACC 1 cut(s) 25
BstF5I GGATG 1 cut(s) 353
BstMAI GTCTC 1 cut(s) 173
BstMWI GCNNNNNNNGC 2 cut(s) 133, 348
BstPI GGTNACC 1 cut(s) 25
BstSFI CTRYAG 1 cut(s) 114
BstV1I GCAGC 3 cut(s) 36, 98, 128
BstV2I GAAGAC 1 cut(s) 167
BstXI CCANNNNNNTGG 1 cut(s) 107
BsuRI GGCC 1 cut(s) 301
BtsCI GGATG 1 cut(s) 353
BtsIMutI CAGTG 1 cut(s) 137
Cac8I GCNNGC 3 cut(s) 9, 91, 254
Csp6I GTAC 1 cut(s) 222
CviAII CATG 3 cut(s) 14, 20, 101
CviJI RGCY 6 cut(s) 93, 119, 127, 149, 201, 301
CviKI_1 RGCY 6 cut(s) 93, 119, 127, 149, 201, 301
CviQI GTAC 1 cut(s) 222
DdeI CTNAG 1 cut(s) 177
Eco147I AGGCCT 1 cut(s) 301
Eco31I GGTCTC 1 cut(s) 173
Eco57I CTGAAG 1 cut(s) 102
Eco91I GGTNACC 1 cut(s) 25
EcoO65I GGTNACC 1 cut(s) 25
FaeI CATG 3 cut(s) 17, 23, 104
FaiI YATR 5 cut(s) 15, 21, 102, 273, 354
FatI CATG 3 cut(s) 13, 19, 100
FblI GTMKAC 1 cut(s) 62
Fnu4HI GCNGC 3 cut(s) 50, 87, 117
Fsp4HI GCNGC 3 cut(s) 50, 87, 117
GluI GCNGC 3 cut(s) 50, 87, 117
HaeIII GGCC 1 cut(s) 301
Hin1II CATG 3 cut(s) 17, 23, 104
HindIII AAGCTT 1 cut(s) 91
HphI GGTGA 2 cut(s) 19, 181
Hpy166II GTNNAC 2 cut(s) 63, 222
Hpy188I TCNGA 2 cut(s) 207, 294
Hpy8I GTNNAC 2 cut(s) 63, 222
HpyAV CCTTC 3 cut(s) 40, 180, 267
HpyCH4V TGCA 3 cut(s) 116, 215, 285
HpyF10VI GCNNNNNNNGC 2 cut(s) 133, 348
HpyF3I CTNAG 1 cut(s) 177
Hsp92II CATG 3 cut(s) 17, 23, 104
LmnI GCTCC 3 cut(s) 124, 146, 198
LpnPI CCDG 4 cut(s) 21, 196, 283, 346
Lsp1109I GCAGC 3 cut(s) 36, 98, 128
LweI GCATC 1 cut(s) 338
MaeIII GTNAC 1 cut(s) 25
MboII GAAGA 1 cut(s) 172
MfeI CAATTG 1 cut(s) 280
MluCI AATT 2 cut(s) 280, 337
MnlI CCTC 2 cut(s) 50, 227
MseI TTAA 1 cut(s) 95
MslI CAYNNNNRTG 2 cut(s) 18, 105
MspA1I CMGCKG 1 cut(s) 119
MunI CAATTG 1 cut(s) 280
MwoI GCNNNNNNNGC 2 cut(s) 133, 348
NlaIII CATG 3 cut(s) 17, 23, 104
NlaIV GGNNCC 2 cut(s) 126, 238
NmuCI GTSAC 1 cut(s) 25
PceI AGGCCT 1 cut(s) 301
PflMI CCANNNNNTGG 1 cut(s) 143
PkrI GCNGC 3 cut(s) 51, 88, 118
PspEI GGTNACC 1 cut(s) 25
PspN4I GGNNCC 2 cut(s) 126, 238
PstI CTGCAG 1 cut(s) 118
PvuII CAGCTG 1 cut(s) 119
RsaI GTAC 1 cut(s) 223
RsaNI GTAC 1 cut(s) 222
RseI CAYNNNNRTG 2 cut(s) 18, 105
SaqAI TTAA 1 cut(s) 95
SatI GCNGC 3 cut(s) 50, 87, 117
SetI ASST 8 cut(s) 32, 95, 121, 151, 203, 238, 247, 335
SfaNI GCATC 1 cut(s) 338
SfcI CTRYAG 1 cut(s) 114
SmiMI CAYNNNNRTG 2 cut(s) 18, 105
Sse9I AATT 2 cut(s) 280, 337
SseBI AGGCCT 1 cut(s) 301
StuI AGGCCT 1 cut(s) 301
TasI AATT 2 cut(s) 280, 337
TatI WGTACW 1 cut(s) 221
Tru1I TTAA 1 cut(s) 95
Tru9I TTAA 1 cut(s) 95
TscAI CASTG 1 cut(s) 144
TseFI GTSAC 1 cut(s) 25
TseI GCWGC 3 cut(s) 49, 86, 116
Tsp45I GTSAC 1 cut(s) 25
TspDTI ATGAA 1 cut(s) 173
TspRI CASTG 1 cut(s) 144
Van91I CCANNNNNTGG 1 cut(s) 143
XcmI CCANNNNNNNNNTGG 1 cut(s) 190
XmiI GTMKAC 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.