AT1G65710

Serine arginine repetitive matrix protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012049
Physical Location & Seq
Reverse (-)
24436901 .. 24438623
1723 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G65710.1

Sequence Viewer

Length: 1368 bp
ATGGGTTGCTGTCTCAGCAAGAAACCTTCCCCTTCTCTTCCCTCTAGTGTTAAACCCTCAGATCCAATCAAACCCATGGAACCAGTGATTGAGCCTTTGGAGGAAGAAGCAAAACCCAAATCTGAGAAACTGAATCAAGAAGAAGAAGAAGAAGAAGTTGTGGTGATAAAACACACAAGAAGCCATGAAGAGAGATCCAAGAAGACAGAATCAGATAAAGATTCTCCAGTTTCTTCTCCTGTGGCGGCTGAGAAATCGAATTCTACACCGCTTGTGAGAATCTCTAGCTGTACTAAAGAAGAAGTTGATGCTATATTGATACAATGTGGGAAGCTAAGTAGAAGCAACTCTGCTGCTAAAACAAGAAGATACTCTGGTTCTAAAAGAAGCTTTGATTTTGACCAGAACGAGAGAATCCGCGGCGGCGATGCGGCGGAGGAAGACGGAATGCAGCGAAATCGTCACCGTGGAGTAGAGAGAGTGCATGGTTCGCCTCGTGAACGGAGAAGACGAACTCCGAGTAGAGAAAGAGAAAGATCGGGAAGCAGAGAAAGAGGAAATGTCGGCGGTGGCGGCGGTGGTAGTAGGAGAGTGAGTAGATCTCCGGCGAAACGTTCTGAGATTCGTAACGCTGATTCGTGTGGCAGTTCGGTAAATTCGAGTAATAATAGACCGGGAAAGTTTGTTACGATTCCTGCAACGGATAAGAGTAACAATGTAGAGCCGTTAGTAAAACGGATTACGGTTAAGAGAAACATCGGAGACGCTTGCAGAATAGCGGCGTCTCCGAGGTCAAAATCTCCGGCTAGAGCGGGGAATAATGTTCCCTCGCTAAGCCGGAGTAATTCAAGAAAGGCGGAACAATCTCCCTATAGAAGAAATCCATTGGGAGAGATTGATCAAAACACTAAGAAGATGATAGAATCTGTGAAACCTAATTCAAGAACAAGTAGAGGTCCAAGCCCGAGTCGTGTTGCTGTTGTAGAACTTACGAAAGCTCCTCAAGTTGTGTTAAGCAGAAGCAGATCGTTGAGGAAATCTCGAGATTTCGATTTGGTATCAAACGAGGATAACAATTACACTGCATTGTTGTTGAAAGATATTCAGAGTTTTCATGGGAAGAGTGTTGATGATAGCGTGATTTCGCTGCCATTGTGTGTTAGTAAAGCTTGTTCAATTGTTGAAGCAGTGGCTGATCTTAACTCTATGACGAACAGAACTTGTTTGAGGTCTGATTCGAGCCGGTTTAGATTCACATCGACGGTGAAGAAAGCCGATCTTATGGAACCGAGTTTTGAGAAGTATGTGACTGTGAAGAGAGGTGGTGGTTCGTTGGAGGAATCATCTGGTAGCAACAATGTTACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

455

Amino Acids

50.02

Weight (kDa)

9.87

Isoelectric Point (pI)

81.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012049)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65710 AT5G37010
fragaria_vesca FvH4_5g39710
malus_domestica MD12G1074700.v1.1 MD14G1072800.v1.1
prunus_persica Prupe.7G058700_v2.0.a1 Prupe.7G058800_v2.0.a1
pyrus_communis pycom12g06450 pycom14g06270
rosa_chinensis RchiOBHm_Chr7g0242011
rosa_laevigata RLG00000000517
rosa_multiflora Rmu_sc0003559.1_g000015
rosa_roxburghii Rroxscaffold_3G00218280
rosa_rugosa Rorug07G0349800
rosa_samantha Rh7AG504500 Rh7BG476300 Rh7CG521000 Rh7DG490100
rosa_wichuraiana Rw7G042640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 812
AccII CGCG 1 cut(s) 420
AclI AACGTT 1 cut(s) 613
AclWI GGATC 2 cut(s) 56, 189
AcsI RAATTY 2 cut(s) 259, 655
AcyI GRCGYC 1 cut(s) 782
AfaI GTAC 1 cut(s) 292
AgsI TTSAA 5 cut(s) 849, 942, 1096, 1176, 1184
AluBI AGCT 5 cut(s) 288, 334, 390, 998, 1169
AluI AGCT 5 cut(s) 288, 334, 390, 998, 1169
Alw26I GTCTC 3 cut(s) 17, 756, 789
AlwI GGATC 2 cut(s) 56, 189
AlwNI CAGNNNCTG 1 cut(s) 1193
Ama87I CYCGRG 2 cut(s) 964, 1041
ApeKI GCWGC 3 cut(s) 353, 451, 1147
ApoI RAATTY 2 cut(s) 259, 655
AspS9I GGNCC 1 cut(s) 956
AsuC2I CCSGG 1 cut(s) 675
AsuHPI GGTGA 3 cut(s) 175, 455, 1276
AvaI CYCGRG 2 cut(s) 964, 1041
AvaII GGWCC 1 cut(s) 956
BaeI ACNNNNGTAYC 2 cut(s) 361, 394
BauI CACGAG 1 cut(s) 495
BbsI GAAGAC 3 cut(s) 209, 447, 514
BbvI GCAGC 3 cut(s) 340, 463, 1134
BceAI ACGGC 1 cut(s) 709
BcgI CGANNNNNNTGC 2 cut(s) 440, 474
BclI TGATCA 1 cut(s) 898
BcnI CCSGG 1 cut(s) 675
BcoDI GTCTC 3 cut(s) 17, 756, 789
BfaI CTAG 3 cut(s) 45, 285, 807
BfmI CTRYAG 1 cut(s) 871
BglII AGATCT 1 cut(s) 599
BisI GCNGC 9 cut(s) 246, 354, 421, 424, 432, 452, 574, 780, 1148
BlpI GCTNAGC 1 cut(s) 833
BlsI GCNGC 9 cut(s) 247, 355, 422, 425, 433, 453, 575, 781, 1149
Bme1390I CCNGG 1 cut(s) 675
Bme18I GGWCC 1 cut(s) 956
BmeT110I CYCGRG 2 cut(s) 964, 1041
BmgT120I GGNCC 1 cut(s) 956
BmiI GGNNCC 2 cut(s) 81, 1287
BmrFI CCNGG 1 cut(s) 675
BmsI GCATC 2 cut(s) 298, 418
BpiI GAAGAC 3 cut(s) 209, 447, 514
BplI GAGNNNNNCTC 4 cut(s) 586, 618, 1024, 1056
BpmI CTGGAG 1 cut(s) 210
Bpu1102I GCTNAGC 1 cut(s) 833
BpuEI CTTGAG 1 cut(s) 987
BpuMI CCSGG 1 cut(s) 675
BsaAI YACGTR 1 cut(s) 1365
BsaBI GATNNNNATC 1 cut(s) 1255
BsaHI GRCGYC 1 cut(s) 782
BsaJI CCNNGG 4 cut(s) 75, 418, 466, 788
BsaXI ACNNNNNCTCC 4 cut(s) 580, 610, 982, 1012
Bse118I RCCGGY 1 cut(s) 1242
Bse1I ACTGG 2 cut(s) 83, 227
Bse8I GATNNNNATC 1 cut(s) 1255
BseDI CCNNGG 4 cut(s) 75, 418, 466, 788
BseJI GATNNNNATC 1 cut(s) 1255
BseMII CTCAG 5 cut(s) 28, 72, 114, 240, 609
BseNI ACTGG 2 cut(s) 83, 227
BseRI GAGGAG 1 cut(s) 990
BseXI GCAGC 3 cut(s) 340, 463, 1134
Bsh1236I CGCG 1 cut(s) 420
BsiHKCI CYCGRG 2 cut(s) 964, 1041
BsiSI CCGG 5 cut(s) 605, 674, 803, 838, 1243
BsmAI GTCTC 3 cut(s) 17, 756, 789
BsmBI CGTCTC 2 cut(s) 756, 789
BsmI GAATGC 1 cut(s) 453
BsoBI CYCGRG 2 cut(s) 964, 1041
Bsp143I GATC 8 cut(s) 61, 194, 536, 599, 898, 1025, 1195, 1276
Bsp1720I GCTNAGC 1 cut(s) 833
Bsp19I CCATGG 1 cut(s) 75
BspCNI CTCAG 5 cut(s) 27, 71, 115, 241, 610
BspFNI CGCG 1 cut(s) 420
BspLI GGNNCC 2 cut(s) 81, 1287
BspPI GGATC 2 cut(s) 56, 189
BsrBI CCGCTC 1 cut(s) 812
BsrFI RCCGGY 1 cut(s) 1242
BsrI ACTGG 2 cut(s) 83, 227
BssAI RCCGGY 1 cut(s) 1242
BssECI CCNNGG 4 cut(s) 75, 418, 466, 788
BssMI GATC 8 cut(s) 61, 194, 536, 599, 898, 1025, 1195, 1276
BssNI GRCGYC 1 cut(s) 782
BssSI CACGAG 1 cut(s) 495
BssT1I CCWWGG 1 cut(s) 75
Bst2BI CACGAG 1 cut(s) 495
Bst4CI ACNGT 4 cut(s) 467, 745, 1264, 1312
Bst6I CTCTTC 4 cut(s) 42, 183, 1115, 1310
BstACI GRCGYC 1 cut(s) 782
BstBAI YACGTR 1 cut(s) 1365
BstC8I GCNNGC 1 cut(s) 769
BstDEI CTNAG 8 cut(s) 14, 58, 123, 249, 335, 618, 833, 909
BstDSI CCRYGG 3 cut(s) 75, 418, 466
BstFNI CGCG 1 cut(s) 420
BstKTI GATC 8 cut(s) 64, 197, 539, 602, 901, 1028, 1198, 1279
BstMAI GTCTC 3 cut(s) 17, 756, 789
BstMBI GATC 8 cut(s) 61, 194, 536, 599, 898, 1025, 1195, 1276
BstMWI GCNNNNNNNGC 3 cut(s) 15, 490, 573
BstSCI CCNGG 1 cut(s) 673
BstSFI CTRYAG 1 cut(s) 871
BstUI CGCG 1 cut(s) 420
BstV1I GCAGC 3 cut(s) 340, 463, 1134
BstV2I GAAGAC 3 cut(s) 209, 447, 514
BstX2I RGATCY 3 cut(s) 61, 194, 599
BstYI RGATCY 3 cut(s) 61, 194, 599
BtgI CCRYGG 3 cut(s) 75, 418, 466
BtgZI GCGATG 1 cut(s) 441
BtsI GCAGTG 2 cut(s) 1080, 1194
BtsIMutI CAGTG 3 cut(s) 90, 1080, 1194
Cac8I GCNNGC 1 cut(s) 769
CaiI CAGNNNCTG 1 cut(s) 1193
Cfr10I RCCGGY 1 cut(s) 1242
Cfr13I GGNCC 1 cut(s) 956
Cfr42I CCGCGG 1 cut(s) 421
CseI GACGC 2 cut(s) 771, 773
Csp6I GTAC 1 cut(s) 291
CviAII CATG 4 cut(s) 76, 185, 485, 1115
CviQI GTAC 1 cut(s) 291
DdeI CTNAG 8 cut(s) 14, 58, 123, 249, 335, 618, 833, 909
DpnI GATC 8 cut(s) 63, 196, 538, 601, 900, 1027, 1197, 1278
DpnII GATC 8 cut(s) 61, 194, 536, 599, 898, 1025, 1195, 1276
Eam1104I CTCTTC 4 cut(s) 42, 183, 1115, 1310
EarI CTCTTC 4 cut(s) 42, 183, 1115, 1310
EciI GGCGGA 2 cut(s) 449, 872
Eco130I CCWWGG 1 cut(s) 75
Eco47I GGWCC 1 cut(s) 956
Eco88I CYCGRG 2 cut(s) 964, 1041
EcoRI GAATTC 1 cut(s) 259
EcoT14I CCWWGG 1 cut(s) 75
ErhI CCWWGG 1 cut(s) 75
Esp3I CGTCTC 2 cut(s) 756, 789
FaeI CATG 4 cut(s) 79, 188, 488, 1118
FaiI YATR 9 cut(s) 77, 186, 314, 486, 873, 1116, 1208, 1283, 1305
FalI AAGNNNNNCTT 2 cut(s) 1263, 1295
FatI CATG 4 cut(s) 75, 184, 484, 1114
FauI CCCGC 1 cut(s) 805
FbaI TGATCA 1 cut(s) 898
Fnu4HI GCNGC 9 cut(s) 246, 354, 421, 424, 432, 452, 574, 780, 1148
Fsp4HI GCNGC 9 cut(s) 246, 354, 421, 424, 432, 452, 574, 780, 1148
FspBI CTAG 3 cut(s) 45, 285, 807
GluI GCNGC 9 cut(s) 246, 354, 421, 424, 432, 452, 574, 780, 1148
GsuI CTGGAG 1 cut(s) 210
HapII CCGG 5 cut(s) 605, 674, 803, 838, 1243
HgaI GACGC 2 cut(s) 771, 773
Hin1I GRCGYC 1 cut(s) 782
Hin1II CATG 4 cut(s) 79, 188, 488, 1118
HindIII AAGCTT 2 cut(s) 388, 1167
HpaII CCGG 5 cut(s) 605, 674, 803, 838, 1243
HphI GGTGA 3 cut(s) 175, 455, 1276
Hpy166II GTNNAC 1 cut(s) 500
Hpy188I TCNGA 9 cut(s) 61, 124, 214, 519, 619, 761, 789, 1107, 1234
Hpy188III TCNNGA 7 cut(s) 137, 497, 540, 849, 942, 1041, 1043
Hpy8I GTNNAC 1 cut(s) 500
Hpy99I CGWCG 1 cut(s) 1264
HpyAV CCTTC 2 cut(s) 36, 42
HpyCH4III ACNGT 4 cut(s) 467, 745, 1264, 1312
HpyCH4IV ACGT 2 cut(s) 613, 1364
HpyCH4V TGCA 5 cut(s) 451, 484, 698, 771, 1085
HpyF10VI GCNNNNNNNGC 3 cut(s) 15, 490, 573
HpyF3I CTNAG 8 cut(s) 14, 58, 123, 249, 335, 618, 833, 909
HpySE526I ACGT 2 cut(s) 613, 1364
Hsp92I GRCGYC 1 cut(s) 782
Hsp92II CATG 4 cut(s) 79, 188, 488, 1118
Ksp22I TGATCA 1 cut(s) 898
KspI CCGCGG 1 cut(s) 421
Kzo9I GATC 8 cut(s) 61, 194, 536, 599, 898, 1025, 1195, 1276
LmnI GCTCC 1 cut(s) 1003
Lsp1109I GCAGC 3 cut(s) 340, 463, 1134
LweI GCATC 2 cut(s) 298, 418
MaeI CTAG 3 cut(s) 45, 285, 807
MaeII ACGT 2 cut(s) 613, 1364
MaeIII GTNAC 6 cut(s) 461, 626, 685, 710, 1306, 1360
MalI GATC 8 cut(s) 63, 196, 538, 601, 900, 1027, 1197, 1278
MbiI CCGCTC 1 cut(s) 812
MboI GATC 8 cut(s) 61, 194, 536, 599, 898, 1025, 1195, 1276
MfeI CAATTG 1 cut(s) 1176
MflI RGATCY 3 cut(s) 61, 194, 599
MluCI AATT 6 cut(s) 259, 655, 844, 937, 1075, 1176
MlyI GAGTC 1 cut(s) 976
MmeI TCCRAC 1 cut(s) 1314
MseI TTAA 4 cut(s) 51, 747, 1013, 1200
MspA1I CMGCKG 1 cut(s) 420
MspI CCGG 5 cut(s) 605, 674, 803, 838, 1243
MspR9I CCNGG 1 cut(s) 675
MunI CAATTG 1 cut(s) 1176
Mva1269I GAATGC 1 cut(s) 453
MvnI CGCG 1 cut(s) 420
MwoI GCNNNNNNNGC 3 cut(s) 15, 490, 573
NciI CCSGG 1 cut(s) 675
NcoI CCATGG 1 cut(s) 75
NdeII GATC 8 cut(s) 61, 194, 536, 599, 898, 1025, 1195, 1276
NlaIII CATG 4 cut(s) 79, 188, 488, 1118
NlaIV GGNNCC 2 cut(s) 81, 1287
NmuCI GTSAC 2 cut(s) 461, 1306
PaeR7I CTCGAG 1 cut(s) 1041
PcsI WCGNNNNNNNCGW 2 cut(s) 508, 656
PctI GAATGC 1 cut(s) 453
PkrI GCNGC 9 cut(s) 247, 355, 422, 425, 433, 453, 575, 781, 1149
PleI GAGTC 1 cut(s) 975
PpsI GAGTC 1 cut(s) 975
Ppu21I YACGTR 1 cut(s) 1365
Psp1406I AACGTT 1 cut(s) 613
PspN4I GGNNCC 2 cut(s) 81, 1287
PspPI GGNCC 1 cut(s) 956
PsrI GAACNNNNNNTAC 2 cut(s) 1156, 1188
PstNI CAGNNNCTG 1 cut(s) 1193
PsuI RGATCY 3 cut(s) 61, 194, 599
RsaI GTAC 1 cut(s) 292
RsaNI GTAC 1 cut(s) 291
SacII CCGCGG 1 cut(s) 421
SaqAI TTAA 4 cut(s) 51, 747, 1013, 1200
SatI GCNGC 9 cut(s) 246, 354, 421, 424, 432, 452, 574, 780, 1148
Sau3AI GATC 8 cut(s) 61, 194, 536, 599, 898, 1025, 1195, 1276
Sau96I GGNCC 1 cut(s) 956
SchI GAGTC 1 cut(s) 976
ScrFI CCNGG 1 cut(s) 675
SfaNI GCATC 2 cut(s) 298, 418
SfcI CTRYAG 1 cut(s) 871
Sfr274I CTCGAG 1 cut(s) 1041
Sfr303I CCGCGG 1 cut(s) 421
SgrBI CCGCGG 1 cut(s) 421
SinI GGWCC 1 cut(s) 956
SlaI CTCGAG 1 cut(s) 1041
SmlI CTYRAG 2 cut(s) 1002, 1041
SmoI CTYRAG 2 cut(s) 1002, 1041
Sse9I AATT 6 cut(s) 259, 655, 844, 937, 1075, 1176
SspMI CTAG 3 cut(s) 45, 285, 807
StyD4I CCNGG 1 cut(s) 673
StyI CCWWGG 1 cut(s) 75
TaaI ACNGT 4 cut(s) 467, 745, 1264, 1312
TaiI ACGT 2 cut(s) 616, 1367
TaqI TCGA 6 cut(s) 257, 659, 1042, 1050, 1238, 1259
TasI AATT 6 cut(s) 259, 655, 844, 937, 1075, 1176
TatI WGTACW 1 cut(s) 290
TauI GCSGC 6 cut(s) 248, 423, 426, 434, 576, 782
Tru1I TTAA 4 cut(s) 51, 747, 1013, 1200
Tru9I TTAA 4 cut(s) 51, 747, 1013, 1200
TscAI CASTG 3 cut(s) 90, 1087, 1194
TseFI GTSAC 2 cut(s) 461, 1306
TseI GCWGC 3 cut(s) 353, 451, 1147
Tsp45I GTSAC 2 cut(s) 461, 1306
TspDTI ATGAA 2 cut(s) 201, 1103
TspGWI ACGGA 4 cut(s) 459, 517, 716, 751
TspRI CASTG 3 cut(s) 90, 1087, 1194
VpaK11BI GGWCC 1 cut(s) 956
XapI RAATTY 2 cut(s) 259, 655
XhoI CTCGAG 1 cut(s) 1041
XspI CTAG 3 cut(s) 45, 285, 807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.