Rw7G042640

Serine arginine repetitive matrix protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0012049
Physical Location & Seq
Forward (+)
66387738 .. 66390451
2714 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G042640.1

Sequence Viewer

Length: 1395 bp
ATGGGCTCTTGTTTCAGCAAGAAGAAAGGCTCCTCTCCTCCTGCAGTTGCTGCTGATTATGCGGCCACTTCTTCAGCACCAGTAGCGCTAGCGGTGGCTGATCCCAAATCAAAACCCTCCGTGCCAGGAAAACAAGAACAAATTGAAGAAGAAAGCAAAGTCAAAAAGGAGATATTCATCATCAAGCACCGCAAGAGCCACGATGATAGAGACAGGCCAGTTCCTCTTCAACAAAATTTACCACAAAAAGCTGATGCCTCTGCTCCAATTACTACTGCCGCTACAACCAGCAGCAGCAGCACCACCACCACTGAGAATTGCAACCAAGTCTCCATGGATGACAAGAAGGCTGCAGAGGCATCTACGGGCACGGGAGTCCGTGTGAGGACATCCAGCTGCAATAAAGAAGAAGTGGATGCCATACTTATACAGTGTGGAAGGCTAAGCCGCAGCTCTTCTGGGAAGGCTGCTTCTTCTTCCTCAGCTTCTTGTGACCGCGGCAAAAAGTACTCTGGCTCAAAAAGGAGCTATGACTTCGACAACTGTGAGAATGATTATCAAGTCACTGCAACTTGTGAGGATGCCAAGAATAATGATGATTTTTCTGATGAGAAAACCCACCACCACCGGCAACGCCACCGCCAATCCTCAAGGCATTCTCCTTCTTCACAAGGGAGGAGGAGGACCCCCAGCAGAGAAAGAAACCAGCAGCAGCGATCCAGCAGCAGAGAGAGACGAACAAGTCGATCCCCCGGAAGACGCTTATCATTGGAGCAAAACAACACCAACTGTAATGCCAACACTACCACCGCTGCAACTGCTAATGTCAATTCTGACACTAATCGGCCCGGAAAGATGAAGATGGTTTCAGTTCCTGCCACCGTTTCGGTGGTGGACAAGAACAGCAATGGGGAATCAGCAACCACTGGTTCCATCAAGCGGATTTCAGTGAAGAGAAATGCTGGCGAGGCAGTAAATGTAGTGGTGGGTTCAAGGACTGCCGCATCACCCCGTTCTCAGTCCCCTGCAAGAGGAGGAGCAAATGCTAAAGCATCCAATGACAGCCTGCAGCAGCAGCCTTCACTTAGCCGCAGCTCTTCACGAAAAGCAGAGCAATCTCCCTACAGAAGGAATCCATTGAGTGAGCTCGATCCCAATTCCCTGGCATATCCACAAGCGCATATCAACAACTCCAATAACAAGAGTGCCAGCAATGTTGTGAATCAGCTGAAACCAAACGTGGAGATTAACAGTAACAAAATTGTTGCCCAAGGGATTAACTACAGAAGCAGCACCGCAAGTAGTGCAATGGACAACAAGGTTGTGGAGCCAGCAGGAGCCTCAGGACCCCACACATTGACAGAAGCAGGTCCTCTAGGCGATCCAGAGACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

464

Amino Acids

49.66

Weight (kDa)

9.75

Isoelectric Point (pI)

67.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012049)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65710 AT5G37010
fragaria_vesca FvH4_5g39710
malus_domestica MD12G1074700.v1.1 MD14G1072800.v1.1
prunus_persica Prupe.7G058700_v2.0.a1 Prupe.7G058800_v2.0.a1
pyrus_communis pycom12g06450 pycom14g06270
rosa_chinensis RchiOBHm_Chr7g0242011
rosa_laevigata RLG00000000517
rosa_multiflora Rmu_sc0003559.1_g000015
rosa_roxburghii Rroxscaffold_3G00218280
rosa_rugosa Rorug07G0349800
rosa_samantha Rh7AG504500 Rh7BG476300 Rh7CG521000 Rh7DG490100
rosa_wichuraiana Rw7G042640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 741
Acc36I ACCTGC 1 cut(s) 1358
AccII CGCG 1 cut(s) 498
AclWI GGATC 5 cut(s) 95, 711, 741, 1145, 1376
AcoI YGGCCR 1 cut(s) 63
AcsI RAATTY 1 cut(s) 235
AcuI CTGAAG 1 cut(s) 57
AfaI GTAC 1 cut(s) 509
AfeI AGCGCT 1 cut(s) 87
AfiI CCNNNNNNNGG 3 cut(s) 939, 1031, 1128
AgsI TTSAA 3 cut(s) 146, 230, 993
AjnI CCWGG 2 cut(s) 124, 1161
AluBI AGCT 8 cut(s) 251, 396, 453, 485, 528, 1095, 1147, 1228
AluI AGCT 8 cut(s) 251, 396, 453, 485, 528, 1095, 1147, 1228
Alw21I GWGCWC 1 cut(s) 1149
Alw26I GTCTC 4 cut(s) 204, 334, 727, 1382
AlwI GGATC 5 cut(s) 95, 711, 741, 1145, 1376
AlwNI CAGNNNCTG 2 cut(s) 50, 875
Aor51HI AGCGCT 1 cut(s) 87
AoxI GGCC 3 cut(s) 63, 215, 845
ApoI RAATTY 1 cut(s) 235
AspLEI GCGC 2 cut(s) 88, 1180
AspS9I GGNCC 4 cut(s) 684, 846, 1346, 1370
AsuC2I CCSGG 2 cut(s) 753, 849
AsuHPI GGTGA 1 cut(s) 999
AsuNHI GCTAGC 1 cut(s) 88
AvaII GGWCC 3 cut(s) 684, 1346, 1370
AxyI CCTNAGG 1 cut(s) 1342
BaeGI GKGCMC 1 cut(s) 371
BanII GRGCYC 2 cut(s) 8, 1149
BbsI GAAGAC 1 cut(s) 763
Bbv12I GWGCWC 1 cut(s) 1149
BbvCI CCTCAGC 1 cut(s) 481
BccI CCATC 2 cut(s) 856, 941
BciT130I CCWGG 2 cut(s) 126, 1163
BcnI CCSGG 2 cut(s) 753, 849
BcoDI GTCTC 4 cut(s) 204, 334, 727, 1382
BfaI CTAG 3 cut(s) 89, 1376, 1393
BfmI CTRYAG 5 cut(s) 42, 351, 1067, 1123, 1282
BfoI RGCGCY 1 cut(s) 89
BfuAI ACCTGC 1 cut(s) 1358
BlpI GCTNAGC 1 cut(s) 443
BmcAI AGTACT 1 cut(s) 509
Bme1390I CCNGG 4 cut(s) 126, 753, 849, 1163
Bme18I GGWCC 3 cut(s) 684, 1346, 1370
BmgT120I GGNCC 4 cut(s) 684, 846, 1346, 1370
BmiI GGNNCC 6 cut(s) 31, 686, 931, 1329, 1339, 1348
BmrFI CCNGG 4 cut(s) 126, 753, 849, 1163
BmsI GCATC 6 cut(s) 244, 368, 406, 571, 1013, 1061
BmtI GCTAGC 1 cut(s) 92
BpiI GAAGAC 1 cut(s) 763
Bpu10I CCTNAGC 1 cut(s) 481
Bpu1102I GCTNAGC 1 cut(s) 443
BpuEI CTTGAG 1 cut(s) 634
BpuMI CCSGG 2 cut(s) 753, 849
BsaBI GATNNNNATC 1 cut(s) 176
BsaI GGTCTC 1 cut(s) 1382
BsaJI CCNNGG 5 cut(s) 333, 496, 751, 1161, 1270
BsaXI ACNNNNNCTCC 4 cut(s) 314, 344, 366, 396
Bsc4I CCNNNNNNNGG 3 cut(s) 939, 1031, 1128
Bse118I RCCGGY 1 cut(s) 627
Bse1I ACTGG 3 cut(s) 80, 218, 931
Bse21I CCTNAGG 1 cut(s) 1342
Bse3DI GCAATG 3 cut(s) 913, 1219, 1314
Bse8I GATNNNNATC 1 cut(s) 176
BseBI CCWGG 2 cut(s) 126, 1163
BseDI CCNNGG 5 cut(s) 333, 496, 751, 1161, 1270
BseGI GGATG 5 cut(s) 343, 389, 421, 586, 1052
BseJI GATNNNNATC 1 cut(s) 176
BseLI CCNNNNNNNGG 3 cut(s) 939, 1031, 1128
BseMI GCAATG 3 cut(s) 913, 1219, 1314
BseMII CTCAG 4 cut(s) 303, 495, 1031, 1356
BseNI ACTGG 3 cut(s) 80, 218, 931
BseRI GAGGAG 6 cut(s) 22, 27, 691, 694, 1047, 1050
BseSI GKGCMC 1 cut(s) 371
BseYI CCCAGC 1 cut(s) 689
Bsh1236I CGCG 1 cut(s) 498
BshFI GGCC 3 cut(s) 65, 217, 847
BsiHKAI GWGCWC 1 cut(s) 1149
BsiSI CCGG 3 cut(s) 628, 753, 849
BslFI GGGAC 1 cut(s) 1006
BslI CCNNNNNNNGG 3 cut(s) 939, 1031, 1128
BsmAI GTCTC 4 cut(s) 204, 334, 727, 1382
BsmBI CGTCTC 1 cut(s) 727
BsmFI GGGAC 1 cut(s) 1006
BsmI GAATGC 1 cut(s) 655
BsnI GGCC 3 cut(s) 65, 217, 847
Bso31I GGTCTC 1 cut(s) 1382
Bsp1286I GDGCHC 3 cut(s) 8, 371, 1149
Bsp143I GATC 5 cut(s) 100, 716, 746, 1150, 1381
Bsp1720I GCTNAGC 1 cut(s) 443
Bsp19I CCATGG 1 cut(s) 333
BspANI GGCC 3 cut(s) 65, 217, 847
BspCNI CTCAG 4 cut(s) 304, 494, 1030, 1355
BspFNI CGCG 1 cut(s) 498
BspLI GGNNCC 6 cut(s) 31, 686, 931, 1329, 1339, 1348
BspMAI CTGCAG 3 cut(s) 46, 355, 1071
BspMI ACCTGC 1 cut(s) 1358
BspOI GCTAGC 1 cut(s) 92
BspPI GGATC 5 cut(s) 95, 711, 741, 1145, 1376
BspQI GCTCTTC 2 cut(s) 460, 1102
BspTNI GGTCTC 1 cut(s) 1382
BsrDI GCAATG 3 cut(s) 913, 1219, 1314
BsrFI RCCGGY 1 cut(s) 627
BsrI ACTGG 3 cut(s) 80, 218, 931
BssAI RCCGGY 1 cut(s) 627
BssECI CCNNGG 5 cut(s) 333, 496, 751, 1161, 1270
BssMI GATC 5 cut(s) 100, 716, 746, 1150, 1381
BssT1I CCWWGG 2 cut(s) 333, 1270
Bst2UI CCWGG 2 cut(s) 126, 1163
Bst4CI ACNGT 5 cut(s) 432, 545, 791, 883, 1253
Bst6I CTCTTC 4 cut(s) 231, 460, 947, 1102
BstAPI GCANNNNNTGC 2 cut(s) 50, 1304
BstC8I GCNNGC 5 cut(s) 90, 964, 1067, 1210, 1332
BstDEI CTNAG 6 cut(s) 312, 443, 481, 1017, 1085, 1342
BstDSI CCRYGG 2 cut(s) 333, 496
BstENI CCTNNNNNAGG 2 cut(s) 1029, 1126
BstF5I GGATG 5 cut(s) 343, 389, 421, 586, 1052
BstFNI CGCG 1 cut(s) 498
BstH2I RGCGCY 1 cut(s) 89
BstHHI GCGC 2 cut(s) 88, 1180
BstKTI GATC 5 cut(s) 103, 719, 749, 1153, 1384
BstMAI GTCTC 4 cut(s) 204, 334, 727, 1382
BstMBI GATC 5 cut(s) 100, 716, 746, 1150, 1381
BstMWI GCNNNNNNNGC 9 cut(s) 50, 59, 83, 297, 356, 818, 968, 1075, 1304
BstNI CCWGG 2 cut(s) 126, 1163
BstSCI CCNGG 4 cut(s) 124, 751, 847, 1161
BstSFI CTRYAG 5 cut(s) 42, 351, 1067, 1123, 1282
BstSLI GKGCMC 1 cut(s) 371
BstUI CGCG 1 cut(s) 498
BstV2I GAAGAC 1 cut(s) 763
BstXI CCANNNNNNTGG 1 cut(s) 1162
Bsu36I CCTNAGG 1 cut(s) 1342
BsuRI GGCC 3 cut(s) 65, 217, 847
BtgI CCRYGG 2 cut(s) 333, 496
BtsCI GGATG 5 cut(s) 343, 389, 421, 586, 1052
BtsI GCAGTG 1 cut(s) 564
BtsIMutI CAGTG 5 cut(s) 309, 437, 564, 924, 954
BveI ACCTGC 1 cut(s) 1358
Cac8I GCNNGC 5 cut(s) 90, 964, 1067, 1210, 1332
CaiI CAGNNNCTG 2 cut(s) 50, 875
CfoI GCGC 2 cut(s) 88, 1180
Cfr10I RCCGGY 1 cut(s) 627
Cfr13I GGNCC 4 cut(s) 684, 846, 1346, 1370
Cfr42I CCGCGG 1 cut(s) 499
CseI GACGC 1 cut(s) 768
Csp6I GTAC 1 cut(s) 508
CviAII CATG 1 cut(s) 334
CviQI GTAC 1 cut(s) 508
DdeI CTNAG 6 cut(s) 312, 443, 481, 1017, 1085, 1342
DpnI GATC 5 cut(s) 102, 718, 748, 1152, 1383
DpnII GATC 5 cut(s) 100, 716, 746, 1150, 1381
DrdI GACNNNNNNGTC 1 cut(s) 741
DseDI GACNNNNNNGTC 1 cut(s) 741
EaeI YGGCCR 1 cut(s) 63
Eam1104I CTCTTC 4 cut(s) 231, 460, 947, 1102
EarI CTCTTC 4 cut(s) 231, 460, 947, 1102
Ecl136II GAGCTC 1 cut(s) 1147
Eco130I CCWWGG 2 cut(s) 333, 1270
Eco24I GRGCYC 2 cut(s) 8, 1149
Eco31I GGTCTC 1 cut(s) 1382
Eco47I GGWCC 3 cut(s) 684, 1346, 1370
Eco47III AGCGCT 1 cut(s) 87
Eco53kI GAGCTC 1 cut(s) 1147
Eco57I CTGAAG 1 cut(s) 57
Eco81I CCTNAGG 1 cut(s) 1342
EcoICRI GAGCTC 1 cut(s) 1147
EcoNI CCTNNNNNAGG 2 cut(s) 1029, 1126
EcoO109I RGGNCCY 3 cut(s) 684, 1346, 1370
EcoRII CCWGG 2 cut(s) 124, 1161
EcoT14I CCWWGG 2 cut(s) 333, 1270
EcoT38I GRGCYC 2 cut(s) 8, 1149
ErhI CCWWGG 2 cut(s) 333, 1270
Esp3I CGTCTC 1 cut(s) 727
FaeI CATG 1 cut(s) 337
FaiI YATR 7 cut(s) 60, 335, 422, 428, 531, 1168, 1182
FaqI GGGAC 1 cut(s) 1006
FatI CATG 1 cut(s) 333
FokI GGATG 5 cut(s) 350, 376, 428, 593, 1039
FriOI GRGCYC 2 cut(s) 8, 1149
FspBI CTAG 3 cut(s) 89, 1376, 1393
GlaI GCGC 2 cut(s) 87, 1179
GsaI CCCAGC 1 cut(s) 693
HaeII RGCGCY 1 cut(s) 89
HaeIII GGCC 3 cut(s) 65, 217, 847
HapII CCGG 3 cut(s) 628, 753, 849
HgaI GACGC 1 cut(s) 768
HhaI GCGC 2 cut(s) 88, 1180
Hin1II CATG 1 cut(s) 337
Hin6I GCGC 2 cut(s) 86, 1178
HinP1I GCGC 2 cut(s) 86, 1178
HinfI GANTC 4 cut(s) 375, 914, 1132, 1222
HpaII CCGG 3 cut(s) 628, 753, 849
HphI GGTGA 1 cut(s) 999
Hpy166II GTNNAC 1 cut(s) 895
Hpy188I TCNGA 2 cut(s) 607, 835
Hpy188III TCNNGA 3 cut(s) 1101, 1344, 1385
Hpy8I GTNNAC 1 cut(s) 895
HpyAV CCTTC 6 cut(s) 340, 432, 457, 672, 1089, 1122
HpyCH4III ACNGT 5 cut(s) 432, 545, 791, 883, 1253
HpyCH4IV ACGT 1 cut(s) 1239
HpyCH4V TGCA 9 cut(s) 44, 321, 353, 399, 569, 815, 1028, 1069, 1307
HpyF10VI GCNNNNNNNGC 9 cut(s) 50, 59, 83, 297, 356, 818, 968, 1075, 1304
HpyF3I CTNAG 6 cut(s) 312, 443, 481, 1017, 1085, 1342
HpySE526I ACGT 1 cut(s) 1239
Hsp92II CATG 1 cut(s) 337
HspAI GCGC 2 cut(s) 86, 1178
KspI CCGCGG 1 cut(s) 499
Kzo9I GATC 5 cut(s) 100, 716, 746, 1150, 1381
LguI GCTCTTC 2 cut(s) 460, 1102
LmnI GCTCC 7 cut(s) 35, 268, 525, 772, 1037, 1327, 1337
LweI GCATC 6 cut(s) 244, 368, 406, 571, 1013, 1061
MaeI CTAG 3 cut(s) 89, 1376, 1393
MaeII ACGT 1 cut(s) 1239
MaeIII GTNAC 3 cut(s) 491, 562, 1253
MalI GATC 5 cut(s) 102, 718, 748, 1152, 1383
MboI GATC 5 cut(s) 100, 716, 746, 1150, 1381
MhlI GDGCHC 3 cut(s) 8, 371, 1149
MluCI AATT 7 cut(s) 141, 235, 267, 316, 829, 1156, 1260
MlyI GAGTC 1 cut(s) 384
MseI TTAA 2 cut(s) 1248, 1278
MspA1I CMGCKG 4 cut(s) 396, 498, 812, 1228
MspI CCGG 3 cut(s) 628, 753, 849
MspR9I CCNGG 4 cut(s) 126, 753, 849, 1163
Mva1269I GAATGC 1 cut(s) 655
MvaI CCWGG 2 cut(s) 126, 1163
MvnI CGCG 1 cut(s) 498
MwoI GCNNNNNNNGC 9 cut(s) 50, 59, 83, 297, 356, 818, 968, 1075, 1304
NciI CCSGG 2 cut(s) 753, 849
NcoI CCATGG 1 cut(s) 333
NdeII GATC 5 cut(s) 100, 716, 746, 1150, 1381
NheI GCTAGC 1 cut(s) 88
NlaIII CATG 1 cut(s) 337
NlaIV GGNNCC 6 cut(s) 31, 686, 931, 1329, 1339, 1348
NmuCI GTSAC 2 cut(s) 491, 562
PciSI GCTCTTC 2 cut(s) 460, 1102
PcsI WCGNNNNNNNCGW 1 cut(s) 742
PctI GAATGC 1 cut(s) 655
PfeI GAWTC 3 cut(s) 914, 1132, 1222
PleI GAGTC 1 cut(s) 383
PpsI GAGTC 1 cut(s) 383
PpuMI RGGWCCY 3 cut(s) 684, 1346, 1370
Psp124BI GAGCTC 1 cut(s) 1149
Psp5II RGGWCCY 3 cut(s) 684, 1346, 1370
Psp6I CCWGG 2 cut(s) 124, 1161
PspFI CCCAGC 1 cut(s) 689
PspGI CCWGG 2 cut(s) 124, 1161
PspN4I GGNNCC 6 cut(s) 31, 686, 931, 1329, 1339, 1348
PspPI GGNCC 4 cut(s) 684, 846, 1346, 1370
PspPPI RGGWCCY 3 cut(s) 684, 1346, 1370
PstI CTGCAG 3 cut(s) 46, 355, 1071
PstNI CAGNNNCTG 2 cut(s) 50, 875
PvuII CAGCTG 2 cut(s) 396, 1228
RsaI GTAC 1 cut(s) 509
RsaNI GTAC 1 cut(s) 508
SacI GAGCTC 1 cut(s) 1149
SacII CCGCGG 1 cut(s) 499
SapI GCTCTTC 2 cut(s) 460, 1102
SaqAI TTAA 2 cut(s) 1248, 1278
Sau3AI GATC 5 cut(s) 100, 716, 746, 1150, 1381
Sau96I GGNCC 4 cut(s) 684, 846, 1346, 1370
ScaI AGTACT 1 cut(s) 509
SchI GAGTC 1 cut(s) 384
ScrFI CCNGG 4 cut(s) 126, 753, 849, 1163
SduI GDGCHC 3 cut(s) 8, 371, 1149
SfaNI GCATC 6 cut(s) 244, 368, 406, 571, 1013, 1061
SfcI CTRYAG 5 cut(s) 42, 351, 1067, 1123, 1282
Sfr303I CCGCGG 1 cut(s) 499
SgrBI CCGCGG 1 cut(s) 499
SinI GGWCC 3 cut(s) 684, 1346, 1370
SmlI CTYRAG 1 cut(s) 649
SmoI CTYRAG 1 cut(s) 649
Sse9I AATT 7 cut(s) 141, 235, 267, 316, 829, 1156, 1260
SspMI CTAG 3 cut(s) 89, 1376, 1393
SstI GAGCTC 1 cut(s) 1149
StyD4I CCNGG 4 cut(s) 124, 751, 847, 1161
StyI CCWWGG 2 cut(s) 333, 1270
TaaI ACNGT 5 cut(s) 432, 545, 791, 883, 1253
TaiI ACGT 1 cut(s) 1242
TaqI TCGA 3 cut(s) 537, 745, 1149
TasI AATT 7 cut(s) 141, 235, 267, 316, 829, 1156, 1260
TatI WGTACW 1 cut(s) 507
TauI GCSGC 6 cut(s) 65, 281, 450, 501, 1004, 1092
TfiI GAWTC 3 cut(s) 914, 1132, 1222
Tru1I TTAA 2 cut(s) 1248, 1278
Tru9I TTAA 2 cut(s) 1248, 1278
TscAI CASTG 5 cut(s) 316, 437, 571, 931, 954
TseFI GTSAC 2 cut(s) 491, 562
Tsp45I GTSAC 2 cut(s) 491, 562
TspDTI ATGAA 2 cut(s) 166, 872
TspGWI ACGGA 2 cut(s) 109, 368
TspRI CASTG 5 cut(s) 316, 437, 571, 931, 954
VpaK11BI GGWCC 3 cut(s) 684, 1346, 1370
XagI CCTNNNNNAGG 2 cut(s) 1029, 1126
XapI RAATTY 1 cut(s) 235
XcmI CCANNNNNNNNNTGG 1 cut(s) 886
XspI CTAG 3 cut(s) 89, 1376, 1393
ZrmI AGTACT 1 cut(s) 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.