Prupe.7G058800_v2.0.a1

Serine arginine repetitive matrix protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0012049
Physical Location & Seq
Forward (+)
9805719 .. 9806515
797 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G058800.1

Sequence Viewer

Length: 420 bp
ATGGAACCAAGCTTCCACAAGTATGTGACAGTGAGAAGGGGCACTGGTGCATTGGAAGGAGGGGCCCTACTAGATATGGAGGACCAAGAATCTTCTGGCAGCAACAGCTTTGTGAGTGGCACTTCTCATTCTCAACAGCATCACTGGGGCTTGTCTTCTTCTTCGTGGGAACCAAATTCAGCTGATTCCACCGATAGCTGGACCTCAAGATCCAACACCAGAGAGGAGGGTCCCAATCACAGAATAACTCCGCTGAGTTTTGATGTGGATGAAGCTGCCACGAGGAGATTGAGTGGGAGAAAGAGAGACTCTGATGACCATAAACAGCGGAGCGGTGGGATTGGACGTGGCAGACTCGCTGCAACTAACACTAAAGGGCTTCACACAATTCCAGGTGTTGCAGCTGCAGCATCCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

14.96

Weight (kDa)

6.65

Isoelectric Point (pI)

46.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012049)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65710 AT5G37010
fragaria_vesca FvH4_5g39710
malus_domestica MD12G1074700.v1.1 MD14G1072800.v1.1
prunus_persica Prupe.7G058700_v2.0.a1 Prupe.7G058800_v2.0.a1
pyrus_communis pycom12g06450 pycom14g06270
rosa_chinensis RchiOBHm_Chr7g0242011
rosa_laevigata RLG00000000517
rosa_multiflora Rmu_sc0003559.1_g000015
rosa_roxburghii Rroxscaffold_3G00218280
rosa_rugosa Rorug07G0349800
rosa_samantha Rh7AG504500 Rh7BG476300 Rh7CG521000 Rh7DG490100
rosa_wichuraiana Rw7G042640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 333
AciI CCGC 3 cut(s) 251, 328, 333
AclWI GGATC 1 cut(s) 204
AcsI RAATTY 1 cut(s) 175
AfiI CCNNNNNNNGG 1 cut(s) 198
AjiI CACGTC 1 cut(s) 347
AjnI CCWGG 1 cut(s) 391
AloI GAACNNNNNNTCC 1 cut(s) 29
AluBI AGCT 6 cut(s) 12, 108, 182, 198, 275, 404
AluI AGCT 6 cut(s) 12, 108, 182, 198, 275, 404
Alw26I GTCTC 1 cut(s) 300
AlwI GGATC 1 cut(s) 204
AoxI GGCC 1 cut(s) 63
ApaI GGGCCC 1 cut(s) 67
ApeKI GCWGC 6 cut(s) 99, 275, 359, 401, 404, 407
ApoI RAATTY 1 cut(s) 175
AspS9I GGNCC 5 cut(s) 63, 64, 82, 201, 230
AvaII GGWCC 3 cut(s) 82, 201, 230
BaeGI GKGCMC 2 cut(s) 44, 67
BanII GRGCYC 1 cut(s) 67
BauI CACGAG 1 cut(s) 280
BbsI GAAGAC 1 cut(s) 147
BbvI GCAGC 5 cut(s) 111, 262, 346, 391, 413
BciT130I CCWGG 1 cut(s) 393
BcoDI GTCTC 1 cut(s) 300
BfaI CTAG 1 cut(s) 71
BfmI CTRYAG 1 cut(s) 405
BisI GCNGC 6 cut(s) 100, 276, 360, 402, 405, 408
BlsI GCNGC 6 cut(s) 101, 277, 361, 403, 406, 409
Bme1390I CCNGG 1 cut(s) 393
Bme18I GGWCC 3 cut(s) 82, 201, 230
BmgBI CACGTC 1 cut(s) 347
BmgT120I GGNCC 5 cut(s) 63, 64, 82, 201, 230
BmiI GGNNCC 6 cut(s) 6, 64, 65, 171, 231, 232
BmrFI CCNGG 1 cut(s) 393
BmrI ACTGGG 1 cut(s) 154
BmsI GCATC 1 cut(s) 148
BmuI ACTGGG 1 cut(s) 154
BpiI GAAGAC 1 cut(s) 147
BpuEI CTTGAG 1 cut(s) 190
BsaXI ACNNNNNCTCC 2 cut(s) 277, 307
Bsc4I CCNNNNNNNGG 1 cut(s) 198
Bse1I ACTGG 2 cut(s) 49, 149
BseBI CCWGG 1 cut(s) 393
BseGI GGATG 2 cut(s) 274, 410
BseLI CCNNNNNNNGG 1 cut(s) 198
BseMII CTCAG 1 cut(s) 245
BseNI ACTGG 2 cut(s) 49, 149
BseRI GAGGAG 2 cut(s) 239, 298
BseSI GKGCMC 2 cut(s) 44, 67
BseXI GCAGC 5 cut(s) 111, 262, 346, 391, 413
BshFI GGCC 1 cut(s) 65
BslFI GGGAC 1 cut(s) 216
BslI CCNNNNNNNGG 1 cut(s) 198
BsmAI GTCTC 1 cut(s) 300
BsmFI GGGAC 1 cut(s) 216
BsnI GGCC 1 cut(s) 65
Bsp120I GGGCCC 1 cut(s) 63
Bsp1286I GDGCHC 2 cut(s) 44, 67
Bsp143I GATC 1 cut(s) 209
BspACI CCGC 3 cut(s) 251, 328, 333
BspANI GGCC 1 cut(s) 65
BspCNI CTCAG 1 cut(s) 246
BspLI GGNNCC 6 cut(s) 6, 64, 65, 171, 231, 232
BspMAI CTGCAG 1 cut(s) 409
BspPI GGATC 1 cut(s) 204
BsrBI CCGCTC 1 cut(s) 333
BsrI ACTGG 2 cut(s) 49, 149
BssMI GATC 1 cut(s) 209
BssSI CACGAG 1 cut(s) 280
Bst2BI CACGAG 1 cut(s) 280
Bst2UI CCWGG 1 cut(s) 393
Bst4CI ACNGT 1 cut(s) 31
BstDEI CTNAG 1 cut(s) 254
BstF5I GGATG 2 cut(s) 274, 410
BstKTI GATC 1 cut(s) 212
BstMAI GTCTC 1 cut(s) 300
BstMBI GATC 1 cut(s) 209
BstMWI GCNNNNNNNGC 2 cut(s) 105, 407
BstNI CCWGG 1 cut(s) 393
BstSCI CCNGG 1 cut(s) 391
BstSFI CTRYAG 1 cut(s) 405
BstSLI GKGCMC 2 cut(s) 44, 67
BstV1I GCAGC 5 cut(s) 111, 262, 346, 391, 413
BstV2I GAAGAC 1 cut(s) 147
BstX2I RGATCY 1 cut(s) 209
BstYI RGATCY 1 cut(s) 209
BsuRI GGCC 1 cut(s) 65
BtrI CACGTC 1 cut(s) 347
BtsCI GGATG 2 cut(s) 274, 410
BtsIMutI CAGTG 3 cut(s) 36, 42, 142
Cfr13I GGNCC 5 cut(s) 63, 64, 82, 201, 230
CviAII CATG 1 cut(s) 415
CviJI RGCY 9 cut(s) 12, 65, 108, 150, 182, 198, 275, 379, 404
CviKI_1 RGCY 9 cut(s) 12, 65, 108, 150, 182, 198, 275, 379, 404
DdeI CTNAG 1 cut(s) 254
DpnI GATC 1 cut(s) 211
DpnII GATC 1 cut(s) 209
Eco24I GRGCYC 1 cut(s) 67
Eco47I GGWCC 3 cut(s) 82, 201, 230
EcoO109I RGGNCCY 3 cut(s) 63, 64, 230
EcoRII CCWGG 1 cut(s) 391
EcoT38I GRGCYC 1 cut(s) 67
FaeI CATG 1 cut(s) 418
FaiI YATR 4 cut(s) 24, 77, 321, 416
FaqI GGGAC 1 cut(s) 216
FatI CATG 1 cut(s) 414
Fnu4HI GCNGC 6 cut(s) 100, 276, 360, 402, 405, 408
FokI GGATG 2 cut(s) 281, 397
FriOI GRGCYC 1 cut(s) 67
Fsp4HI GCNGC 6 cut(s) 100, 276, 360, 402, 405, 408
FspBI CTAG 1 cut(s) 71
GluI GCNGC 6 cut(s) 100, 276, 360, 402, 405, 408
HaeIII GGCC 1 cut(s) 65
Hin1II CATG 1 cut(s) 418
HindIII AAGCTT 1 cut(s) 10
HinfI GANTC 4 cut(s) 89, 185, 308, 354
Hpy188I TCNGA 1 cut(s) 313
Hpy188III TCNNGA 1 cut(s) 207
HpyAV CCTTC 2 cut(s) 30, 50
HpyCH4III ACNGT 1 cut(s) 31
HpyCH4IV ACGT 1 cut(s) 346
HpyCH4V TGCA 4 cut(s) 50, 362, 401, 407
HpyF10VI GCNNNNNNNGC 2 cut(s) 105, 407
HpyF3I CTNAG 1 cut(s) 254
HpySE526I ACGT 1 cut(s) 346
Hsp92II CATG 1 cut(s) 418
KflI GGGWCCC 1 cut(s) 230
Kzo9I GATC 1 cut(s) 209
LmnI GCTCC 1 cut(s) 330
LpnPI CCDG 7 cut(s) 30, 81, 130, 184, 232, 378, 405
Lsp1109I GCAGC 5 cut(s) 111, 262, 346, 391, 413
LweI GCATC 1 cut(s) 148
MaeI CTAG 1 cut(s) 71
MaeII ACGT 1 cut(s) 346
MaeIII GTNAC 1 cut(s) 25
MalI GATC 1 cut(s) 211
MbiI CCGCTC 1 cut(s) 333
MboI GATC 1 cut(s) 209
MboII GAAGA 4 cut(s) 84, 147, 150, 153
MflI RGATCY 1 cut(s) 209
MhlI GDGCHC 2 cut(s) 44, 67
MluCI AATT 2 cut(s) 175, 387
MlyI GAGTC 2 cut(s) 302, 348
MmeI TCCRAC 1 cut(s) 237
MnlI CCTC 6 cut(s) 53, 73, 214, 217, 220, 276
MslI CAYNNNNRTG 1 cut(s) 21
MspA1I CMGCKG 4 cut(s) 182, 253, 328, 404
MspR9I CCNGG 1 cut(s) 393
MvaI CCWGG 1 cut(s) 393
MwoI GCNNNNNNNGC 2 cut(s) 105, 407
NdeII GATC 1 cut(s) 209
NlaIII CATG 1 cut(s) 418
NlaIV GGNNCC 6 cut(s) 6, 64, 65, 171, 231, 232
NmuCI GTSAC 1 cut(s) 25
PfeI GAWTC 2 cut(s) 89, 185
PkrI GCNGC 6 cut(s) 101, 277, 361, 403, 406, 409
PleI GAGTC 2 cut(s) 302, 348
PpsI GAGTC 2 cut(s) 302, 348
PpuMI RGGWCCY 1 cut(s) 230
Psp5II RGGWCCY 1 cut(s) 230
Psp6I CCWGG 1 cut(s) 391
PspGI CCWGG 1 cut(s) 391
PspN4I GGNNCC 6 cut(s) 6, 64, 65, 171, 231, 232
PspOMI GGGCCC 1 cut(s) 63
PspPI GGNCC 5 cut(s) 63, 64, 82, 201, 230
PspPPI RGGWCCY 1 cut(s) 230
PstI CTGCAG 1 cut(s) 409
PsuI RGATCY 1 cut(s) 209
PvuII CAGCTG 2 cut(s) 182, 404
RseI CAYNNNNRTG 1 cut(s) 21
SatI GCNGC 6 cut(s) 100, 276, 360, 402, 405, 408
Sau3AI GATC 1 cut(s) 209
Sau96I GGNCC 5 cut(s) 63, 64, 82, 201, 230
SchI GAGTC 2 cut(s) 302, 348
ScrFI CCNGG 1 cut(s) 393
SduI GDGCHC 2 cut(s) 44, 67
SetI ASST 9 cut(s) 14, 110, 184, 200, 206, 277, 349, 397, 406
SfaNI GCATC 1 cut(s) 148
SfcI CTRYAG 1 cut(s) 405
SinI GGWCC 3 cut(s) 82, 201, 230
SmiMI CAYNNNNRTG 1 cut(s) 21
SmlI CTYRAG 1 cut(s) 205
SmoI CTYRAG 1 cut(s) 205
Sse9I AATT 2 cut(s) 175, 387
SsiI CCGC 3 cut(s) 251, 328, 333
SspMI CTAG 1 cut(s) 71
StyD4I CCNGG 1 cut(s) 391
TaaI ACNGT 1 cut(s) 31
TaiI ACGT 1 cut(s) 349
TasI AATT 2 cut(s) 175, 387
TfiI GAWTC 2 cut(s) 89, 185
TscAI CASTG 3 cut(s) 36, 49, 149
TseFI GTSAC 1 cut(s) 25
TseI GCWGC 6 cut(s) 99, 275, 359, 401, 404, 407
Tsp45I GTSAC 1 cut(s) 25
TspDTI ATGAA 1 cut(s) 285
TspRI CASTG 3 cut(s) 36, 49, 149
VpaK11BI GGWCC 3 cut(s) 82, 201, 230
XapI RAATTY 1 cut(s) 175
XcmI CCANNNNNNNNNTGG 1 cut(s) 92
XspI CTAG 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.