Rorug07G0349800

Serine arginine repetitive matrix protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0009436
Physical Location & Seq
Forward (+)
38679180 .. 38682920
3741 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0349800.1

Sequence Viewer

Length: 465 bp
ATGGGAAACGAGACAGTAGTAGTGGCTGAAACTGTGGGGTCGATAAAAGTGGCGGTGGCAGTGTGCCTATTGAGAGGCCAAAACGTGCTCTTGGGACGGCGCCGCTCCTCTCTCGGAGATTCCACCTTTTCACTCCCCAGTGGCCACCTTGAATTTGGCGAGAGCTTTCAGGAGTGTGCAGTAAGGGAATTGAAGGAAGAAACTGGTTTAGACATTGACAAGATAGAGTTGCTAACTGTGACCAATAACCTGTTCCTAGATGAAGCCAAACCATCGCAGTACGTGGCTGTTTTCATGAGAGCAGTGCTGGCAGATCCTTGTCAAGAGCCCCATAATATTGAACCAGAATTCTGTGATGGTTGGGGATGGTATGAATGGGACAATCTCCCGAAGCCACTTTTCTGGCCTTTGGAGAAAGTGGTGCAGGATGGATTTAACCCTTTTCCAACATTAGACAGCTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

17.22

Weight (kDa)

4.46

Isoelectric Point (pI)

51.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NUDIX PF00293 16 - 141 7.5e-19 NUDIX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 99
AccBSI CCGCTC 1 cut(s) 105
AciI CCGC 2 cut(s) 53, 103
AclWI GGATC 1 cut(s) 308
AcoI YGGCCR 1 cut(s) 142
AcsI RAATTY 2 cut(s) 152, 347
AcyI GRCGYC 1 cut(s) 100
AfaI GTAC 1 cut(s) 281
AgsI TTSAA 3 cut(s) 152, 193, 341
AjuI GAANNNNNNNTTGG 2 cut(s) 236, 268
AluBI AGCT 2 cut(s) 165, 459
AluI AGCT 2 cut(s) 165, 459
Alw21I GWGCWC 1 cut(s) 90
Alw26I GTCTC 1 cut(s) 5
AlwI GGATC 1 cut(s) 308
AoxI GGCC 3 cut(s) 76, 142, 404
ApeKI GCWGC 1 cut(s) 459
ApoI RAATTY 2 cut(s) 152, 347
AspLEI GCGC 1 cut(s) 102
BalI TGGCCA 1 cut(s) 144
BanI GGYRCC 1 cut(s) 99
BanII GRGCYC 1 cut(s) 330
Bbv12I GWGCWC 1 cut(s) 90
BbvI GCAGC 1 cut(s) 446
BccI CCATC 4 cut(s) 280, 350, 360, 422
BceAI ACGGC 1 cut(s) 113
BcoDI GTCTC 1 cut(s) 5
BfaI CTAG 2 cut(s) 257, 463
BfoI RGCGCY 1 cut(s) 103
BisI GCNGC 2 cut(s) 103, 460
BlsI GCNGC 2 cut(s) 104, 461
BmiI GGNNCC 1 cut(s) 101
BmrI ACTGGG 1 cut(s) 132
BmuI ACTGGG 1 cut(s) 132
BsaAI YACGTR 1 cut(s) 283
BsaHI GRCGYC 1 cut(s) 100
Bse1I ACTGG 2 cut(s) 138, 208
BseGI GGATG 2 cut(s) 371, 433
BseNI ACTGG 2 cut(s) 138, 208
BseRI GAGGAG 1 cut(s) 97
BseXI GCAGC 1 cut(s) 446
BsgI GTGCAG 2 cut(s) 198, 443
BshFI GGCC 3 cut(s) 78, 144, 406
BshNI GGYRCC 1 cut(s) 99
BsiHKAI GWGCWC 1 cut(s) 90
BslFI GGGAC 2 cut(s) 108, 392
BsmAI GTCTC 1 cut(s) 5
BsmFI GGGAC 2 cut(s) 108, 392
BsnI GGCC 3 cut(s) 78, 144, 406
Bsp1286I GDGCHC 2 cut(s) 90, 330
Bsp143I GATC 1 cut(s) 313
BspACI CCGC 2 cut(s) 53, 103
BspANI GGCC 3 cut(s) 78, 144, 406
BspHI TCATGA 1 cut(s) 294
BspLI GGNNCC 1 cut(s) 101
BspPI GGATC 1 cut(s) 308
BspT107I GGYRCC 1 cut(s) 99
BsrBI CCGCTC 1 cut(s) 105
BsrI ACTGG 2 cut(s) 138, 208
BssMI GATC 1 cut(s) 313
BssNI GRCGYC 1 cut(s) 100
Bst4CI ACNGT 3 cut(s) 16, 34, 238
BstACI GRCGYC 1 cut(s) 100
BstBAI YACGTR 1 cut(s) 283
BstC8I GCNNGC 1 cut(s) 309
BstF5I GGATG 2 cut(s) 371, 433
BstH2I RGCGCY 1 cut(s) 103
BstHHI GCGC 1 cut(s) 102
BstKTI GATC 1 cut(s) 316
BstMAI GTCTC 1 cut(s) 5
BstMBI GATC 1 cut(s) 313
BstMWI GCNNNNNNNGC 1 cut(s) 308
BstV1I GCAGC 1 cut(s) 446
BstX2I RGATCY 1 cut(s) 313
BstXI CCANNNNNNTGG 1 cut(s) 402
BstYI RGATCY 1 cut(s) 313
BsuRI GGCC 3 cut(s) 78, 144, 406
BtgZI GCGATG 1 cut(s) 258
BtsCI GGATG 2 cut(s) 371, 433
BtsI GCAGTG 2 cut(s) 66, 309
BtsIMutI CAGTG 3 cut(s) 66, 145, 309
Cac8I GCNNGC 1 cut(s) 309
CciI TCATGA 1 cut(s) 294
CfoI GCGC 1 cut(s) 102
Csp6I GTAC 1 cut(s) 280
CviAII CATG 1 cut(s) 295
CviQI GTAC 1 cut(s) 280
DinI GGCGCC 1 cut(s) 101
DpnI GATC 1 cut(s) 315
DpnII GATC 1 cut(s) 313
EaeI YGGCCR 1 cut(s) 142
Eco24I GRGCYC 1 cut(s) 330
EcoRI GAATTC 1 cut(s) 347
EcoT38I GRGCYC 1 cut(s) 330
EgeI GGCGCC 1 cut(s) 101
EheI GGCGCC 1 cut(s) 101
FaeI CATG 1 cut(s) 298
FaiI YATR 3 cut(s) 296, 333, 372
FaqI GGGAC 2 cut(s) 108, 392
FatI CATG 1 cut(s) 294
Fnu4HI GCNGC 2 cut(s) 103, 460
FokI GGATG 2 cut(s) 378, 440
FriOI GRGCYC 1 cut(s) 330
Fsp4HI GCNGC 2 cut(s) 103, 460
FspBI CTAG 2 cut(s) 257, 463
GlaI GCGC 1 cut(s) 101
GluI GCNGC 2 cut(s) 103, 460
HaeII RGCGCY 1 cut(s) 103
HaeIII GGCC 3 cut(s) 78, 144, 406
HhaI GCGC 1 cut(s) 102
Hin1I GRCGYC 1 cut(s) 100
Hin1II CATG 1 cut(s) 298
Hin6I GCGC 1 cut(s) 100
HinP1I GCGC 1 cut(s) 100
HinfI GANTC 1 cut(s) 119
Hpy188I TCNGA 1 cut(s) 116
Hpy188III TCNNGA 4 cut(s) 170, 295, 323, 388
HpyAV CCTTC 1 cut(s) 187
HpyCH4III ACNGT 3 cut(s) 16, 34, 238
HpyCH4IV ACGT 2 cut(s) 84, 282
HpyCH4V TGCA 2 cut(s) 179, 424
HpyF10VI GCNNNNNNNGC 1 cut(s) 308
HpySE526I ACGT 2 cut(s) 84, 282
Hsp92I GRCGYC 1 cut(s) 100
Hsp92II CATG 1 cut(s) 298
HspAI GCGC 1 cut(s) 100
KasI GGCGCC 1 cut(s) 99
Kzo9I GATC 1 cut(s) 313
LmnI GCTCC 1 cut(s) 110
LpnPI CCDG 8 cut(s) 151, 155, 189, 263, 293, 357, 388, 410
Lsp1109I GCAGC 1 cut(s) 446
MaeI CTAG 2 cut(s) 257, 463
MaeII ACGT 2 cut(s) 84, 282
MaeIII GTNAC 1 cut(s) 238
MalI GATC 1 cut(s) 315
MbiI CCGCTC 1 cut(s) 105
MboI GATC 1 cut(s) 313
MboII GAAGA 1 cut(s) 209
MflI RGATCY 1 cut(s) 313
MhlI GDGCHC 2 cut(s) 90, 330
MlsI TGGCCA 1 cut(s) 144
MluCI AATT 3 cut(s) 152, 188, 347
MluNI TGGCCA 1 cut(s) 144
Mly113I GGCGCC 1 cut(s) 100
MnlI CCTC 2 cut(s) 68, 118
Mox20I TGGCCA 1 cut(s) 144
MscI TGGCCA 1 cut(s) 144
MseI TTAA 1 cut(s) 435
Msp20I TGGCCA 1 cut(s) 144
MspA1I CMGCKG 1 cut(s) 459
MwoI GCNNNNNNNGC 1 cut(s) 308
NarI GGCGCC 1 cut(s) 100
NdeII GATC 1 cut(s) 313
NlaIII CATG 1 cut(s) 298
NlaIV GGNNCC 1 cut(s) 101
NmuCI GTSAC 1 cut(s) 238
PagI TCATGA 1 cut(s) 294
PfeI GAWTC 1 cut(s) 119
PkrI GCNGC 2 cut(s) 104, 461
PluTI GGCGCC 1 cut(s) 103
Ppu21I YACGTR 1 cut(s) 283
PspN4I GGNNCC 1 cut(s) 101
PsuI RGATCY 1 cut(s) 313
PvuII CAGCTG 1 cut(s) 459
RsaI GTAC 1 cut(s) 281
RsaNI GTAC 1 cut(s) 280
SaqAI TTAA 1 cut(s) 435
SatI GCNGC 2 cut(s) 103, 460
Sau3AI GATC 1 cut(s) 313
SduI GDGCHC 2 cut(s) 90, 330
SetI ASST 7 cut(s) 87, 128, 150, 167, 252, 285, 461
SfoI GGCGCC 1 cut(s) 101
Sse9I AATT 3 cut(s) 152, 188, 347
SsiI CCGC 2 cut(s) 53, 103
SspDI GGCGCC 1 cut(s) 99
SspI AATATT 1 cut(s) 337
SspMI CTAG 2 cut(s) 257, 463
TaaI ACNGT 3 cut(s) 16, 34, 238
TaiI ACGT 2 cut(s) 87, 285
TaqI TCGA 1 cut(s) 41
TasI AATT 3 cut(s) 152, 188, 347
TauI GCSGC 1 cut(s) 105
TfiI GAWTC 1 cut(s) 119
Tru1I TTAA 1 cut(s) 435
Tru9I TTAA 1 cut(s) 435
TscAI CASTG 3 cut(s) 66, 145, 309
TseFI GTSAC 1 cut(s) 238
TseI GCWGC 1 cut(s) 459
Tsp45I GTSAC 1 cut(s) 238
TspDTI ATGAA 3 cut(s) 276, 283, 387
TspRI CASTG 3 cut(s) 66, 145, 309
XapI RAATTY 2 cut(s) 152, 347
XcmI CCANNNNNNNNNTGG 1 cut(s) 152
XspI CTAG 2 cut(s) 257, 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.