AT3G02690

integral membrane family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0009436
Physical Location & Seq
Forward (+)
579586 .. 581611
2026 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G02690.1

Sequence Viewer

Length: 1254 bp
ATGGAGTGGCCATGGTCGGCCATCGCTGCTTCTTCTTCCTCTTCTTCTAGTTGCTTCTTTGCTTCTCCTAACTCTTGCTTGTCTATTACTAGACGAACGAATTTGAGCTGTGTTAACACTTCGGTTAAATCCTTGCGCCACAGCAGATTCGACTCGAAGCATAATCTCGTTAAACGTCGAATCAATGGAGATTCCGTTGTTCGGAGAAGCACCACAAGCAATAATAGCACTGAGGAGACAGAATCATCGTCGTCTTCTTCGTCTGTAGATTGCGTTGGAATGGGATCAGACGTGGAATGCGTCAATAACGGGGAAGATGAGGAGAATCGGAGCTCTGGAATCTTGAGCGGCGGTGAAGGAACGTTTCTTGAATGGACGGTTCTGATTTCACCCTTCTTTTTCTGGGGAACGGCGATGGTGGCGATGAAGGAAGTGTTGCCCATTACTGGTCCTTTCTTCGTGGCCGCGTTTCGGTTAATTCCGGCTGGTTTGTTGCTTGTCGCCTTTGCAGTTTACAAAGGCAGACCTTTGCCTGAAGGAATCAATGCTTGGTTCTCTATCGCTCTCTTTGCTCTTGTGGACGCCACTTGTTTCCAGGGATTTCTTGCTCAAGGGTTACAGAGAACTTCTGCTGGTTTAGGAAGTGTCATAATTGATTCTCAGCCACTGACTGTAGCTGTGTTAGCATCTTTCTTGTTTGGTGAGTCAATTGGAATAGTGAGAGCTGGAGGTTTGCTTCTTGGTGTTGCTGGACTTTTGCTTCTTGAGGTTCCATCAGTAACTTCAGATGGTAATAATTTTTCCTTGTGGGGAAGTGGAGAATGGTGGATGCTTCTTGCAGCTCAGAGCATGGCTATTGGCACTGTCATGGTTCGATGGGTCTCAAAATACTCAGATCCAATTATGGCAACCGGTTGGCATATGGTTATCGGTGGCCTTCCTCTTTTGGCGATTTCTGTTATAAATCATGACCCGGTTTTTAATGGTAGTCTTCAAGATCTATCCACAAATGATGTTATAGCACTTCTCTACACATCCATTTTTGGCAGCGCAGTTAGCTACGGTGTTTACTTCTATAGCGCTACTAAAGGAAGCCTAACTAAACTCAGCTCACTCACCTTCTTGACACCAATGTTTGCATCAATCTTTGGGTATCTGTACCTCAATGAGACTTTCTCCTCATTGCAACTGGTCGGAGCAGCAGTGACTTTGGTCGCTATATACTTGGTGAACTTTCCCGAAGGCAACGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

417

Amino Acids

44.6

Weight (kDa)

5.09

Isoelectric Point (pI)

42.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EamA PF00892 128 - 255 7.5e-22 EamA-like transporter family
EamA PF00892 272 - 411 1.5e-26 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 962
AccBSI CCGCTC 1 cut(s) 348
AccII CGCG 1 cut(s) 467
AciI CCGC 3 cut(s) 348, 351, 465
AclI AACGTT 1 cut(s) 362
AclWI GGATC 2 cut(s) 292, 890
AcoI YGGCCR 3 cut(s) 8, 18, 462
AcsI RAATTY 1 cut(s) 100
AcuI CTGAAG 2 cut(s) 555, 768
AcyI GRCGYC 1 cut(s) 582
AfaI GTAC 1 cut(s) 1160
AfeI AGCGCT 1 cut(s) 1081
AfiI CCNNNNNNNGG 3 cut(s) 201, 446, 471
AgeI ACCGGT 1 cut(s) 911
AgsI TTSAA 2 cut(s) 371, 995
AjiI CACGTC 1 cut(s) 292
AjnI CCWGG 1 cut(s) 594
AjuI GAANNNNNNNTTGG 2 cut(s) 532, 564
AluBI AGCT 7 cut(s) 108, 333, 677, 725, 842, 1059, 1110
AluI AGCT 7 cut(s) 108, 333, 677, 725, 842, 1059, 1110
Alw21I GWGCWC 1 cut(s) 335
Alw26I GTCTC 3 cut(s) 230, 886, 1163
AlwI GGATC 2 cut(s) 292, 890
AlwNI CAGNNNCTG 1 cut(s) 667
Aor51HI AGCGCT 1 cut(s) 1081
AoxI GGCC 4 cut(s) 8, 18, 462, 934
ApeKI GCWGC 4 cut(s) 26, 839, 1047, 1199
ApoI RAATTY 1 cut(s) 100
AsiGI ACCGGT 1 cut(s) 911
AspLEI GCGC 3 cut(s) 138, 1052, 1082
AspS9I GGNCC 1 cut(s) 449
AsuC2I CCSGG 1 cut(s) 974
AsuHPI GGTGA 5 cut(s) 365, 381, 713, 1108, 1240
AvaII GGWCC 1 cut(s) 449
BalI TGGCCA 1 cut(s) 10
BanII GRGCYC 1 cut(s) 335
BbsI GAAGAC 2 cut(s) 246, 983
Bbv12I GWGCWC 1 cut(s) 335
BbvI GCAGC 4 cut(s) 13, 851, 1059, 1211
BccI CCATC 5 cut(s) 29, 409, 781, 782, 870
BceAI ACGGC 1 cut(s) 426
BciT130I CCWGG 1 cut(s) 596
BcnI CCSGG 1 cut(s) 974
BcoDI GTCTC 3 cut(s) 230, 886, 1163
BfaI CTAG 2 cut(s) 48, 90
BfmI CTRYAG 3 cut(s) 264, 672, 1075
BfoI RGCGCY 1 cut(s) 1083
BglII AGATCT 1 cut(s) 997
BisI GCNGC 6 cut(s) 27, 349, 465, 840, 1048, 1200
BlsI GCNGC 6 cut(s) 28, 350, 466, 841, 1049, 1201
Bme1390I CCNGG 2 cut(s) 596, 974
Bme18I GGWCC 1 cut(s) 449
BmgBI CACGTC 1 cut(s) 292
BmgT120I GGNCC 1 cut(s) 449
BmiI GGNNCC 1 cut(s) 771
BmrFI CCNGG 2 cut(s) 596, 974
BmsI GCATC 3 cut(s) 695, 819, 1148
BoxI GACNNNNGTC 1 cut(s) 1211
BpiI GAAGAC 2 cut(s) 246, 983
BplI GAGNNNNNCTC 2 cut(s) 1160, 1192
BpmI CTGGAG 1 cut(s) 747
BpuEI CTTGAG 3 cut(s) 364, 594, 785
BpuMI CCSGG 1 cut(s) 974
BsaHI GRCGYC 1 cut(s) 582
BsaI GGTCTC 1 cut(s) 886
BsaJI CCNNGG 2 cut(s) 11, 595
BsaWI WCCGGW 1 cut(s) 911
BsaXI ACNNNNNCTCC 4 cut(s) 180, 210, 1188, 1218
Bsc4I CCNNNNNNNGG 3 cut(s) 201, 446, 471
Bse118I RCCGGY 1 cut(s) 911
Bse1I ACTGG 2 cut(s) 451, 1194
Bse3DI GCAATG 1 cut(s) 1181
BseBI CCWGG 1 cut(s) 596
BseDI CCNNGG 2 cut(s) 11, 595
BseGI GGATG 2 cut(s) 834, 1034
BseLI CCNNNNNNNGG 3 cut(s) 201, 446, 471
BseMI GCAATG 1 cut(s) 1181
BseMII CTCAG 5 cut(s) 222, 674, 857, 906, 1120
BseNI ACTGG 2 cut(s) 451, 1194
BseRI GAGGAG 3 cut(s) 248, 335, 1168
BseXI GCAGC 4 cut(s) 13, 851, 1059, 1211
Bsh1236I CGCG 1 cut(s) 467
BshFI GGCC 4 cut(s) 10, 20, 464, 936
BshTI ACCGGT 1 cut(s) 911
BsiHKAI GWGCWC 1 cut(s) 335
BsiSI CCGG 3 cut(s) 482, 912, 974
BslI CCNNNNNNNGG 3 cut(s) 201, 446, 471
BsmAI GTCTC 3 cut(s) 230, 886, 1163
BsmI GAATGC 1 cut(s) 302
BsnI GGCC 4 cut(s) 10, 20, 464, 936
Bso31I GGTCTC 1 cut(s) 886
Bsp1286I GDGCHC 1 cut(s) 335
Bsp143I GATC 3 cut(s) 284, 895, 997
Bsp19I CCATGG 1 cut(s) 11
BspACI CCGC 3 cut(s) 348, 351, 465
BspANI GGCC 4 cut(s) 10, 20, 464, 936
BspCNI CTCAG 5 cut(s) 223, 673, 856, 905, 1119
BspFNI CGCG 1 cut(s) 467
BspHI TCATGA 1 cut(s) 967
BspLI GGNNCC 1 cut(s) 771
BspPI GGATC 2 cut(s) 292, 890
BspTNI GGTCTC 1 cut(s) 886
BsrBI CCGCTC 1 cut(s) 348
BsrDI GCAATG 1 cut(s) 1181
BsrFI RCCGGY 1 cut(s) 911
BsrI ACTGG 2 cut(s) 451, 1194
BssAI RCCGGY 1 cut(s) 911
BssECI CCNNGG 2 cut(s) 11, 595
BssMI GATC 3 cut(s) 284, 895, 997
BssNI GRCGYC 1 cut(s) 582
BssT1I CCWWGG 1 cut(s) 11
Bst2UI CCWGG 1 cut(s) 596
Bst4CI ACNGT 4 cut(s) 379, 673, 865, 1064
Bst6I CTCTTC 1 cut(s) 46
BstACI GRCGYC 1 cut(s) 582
BstDEI CTNAG 5 cut(s) 231, 660, 843, 892, 1106
BstDSI CCRYGG 1 cut(s) 11
BstF5I GGATG 2 cut(s) 834, 1034
BstFNI CGCG 1 cut(s) 467
BstH2I RGCGCY 1 cut(s) 1083
BstHHI GCGC 3 cut(s) 138, 1052, 1082
BstKTI GATC 3 cut(s) 287, 898, 1000
BstMAI GTCTC 3 cut(s) 230, 886, 1163
BstMBI GATC 3 cut(s) 284, 895, 997
BstMWI GCNNNNNNNGC 7 cut(s) 26, 216, 225, 419, 569, 683, 1056
BstNI CCWGG 1 cut(s) 596
BstPAI GACNNNNGTC 1 cut(s) 1211
BstSCI CCNGG 2 cut(s) 594, 972
BstSFI CTRYAG 3 cut(s) 264, 672, 1075
BstUI CGCG 1 cut(s) 467
BstV1I GCAGC 4 cut(s) 13, 851, 1059, 1211
BstV2I GAAGAC 2 cut(s) 246, 983
BstX2I RGATCY 2 cut(s) 895, 997
BstYI RGATCY 2 cut(s) 895, 997
BsuRI GGCC 4 cut(s) 10, 20, 464, 936
BtgI CCRYGG 1 cut(s) 11
BtgZI GCGATG 3 cut(s) 7, 428, 437
BtrI CACGTC 1 cut(s) 292
BtsCI GGATG 2 cut(s) 834, 1034
BtsI GCAGTG 1 cut(s) 1209
BtsIMutI CAGTG 4 cut(s) 228, 665, 861, 1209
CaiI CAGNNNCTG 1 cut(s) 667
CciI TCATGA 1 cut(s) 967
CfoI GCGC 3 cut(s) 138, 1052, 1082
Cfr10I RCCGGY 1 cut(s) 911
Cfr13I GGNCC 1 cut(s) 449
CseI GACGC 2 cut(s) 289, 590
Csp6I GTAC 1 cut(s) 1159
CspAI ACCGGT 1 cut(s) 911
CviAII CATG 4 cut(s) 12, 850, 868, 968
CviQI GTAC 1 cut(s) 1159
DdeI CTNAG 5 cut(s) 231, 660, 843, 892, 1106
DpnI GATC 3 cut(s) 286, 897, 999
DpnII GATC 3 cut(s) 284, 895, 997
EaeI YGGCCR 3 cut(s) 8, 18, 462
Eam1104I CTCTTC 1 cut(s) 46
EarI CTCTTC 1 cut(s) 46
Ecl136II GAGCTC 1 cut(s) 333
Eco130I CCWWGG 1 cut(s) 11
Eco24I GRGCYC 1 cut(s) 335
Eco31I GGTCTC 1 cut(s) 886
Eco47I GGWCC 1 cut(s) 449
Eco47III AGCGCT 1 cut(s) 1081
Eco53kI GAGCTC 1 cut(s) 333
Eco57I CTGAAG 2 cut(s) 555, 768
EcoICRI GAGCTC 1 cut(s) 333
EcoRII CCWGG 1 cut(s) 594
EcoT14I CCWWGG 1 cut(s) 11
EcoT38I GRGCYC 1 cut(s) 335
ErhI CCWWGG 1 cut(s) 11
FaeI CATG 4 cut(s) 15, 853, 871, 971
FatI CATG 4 cut(s) 11, 849, 867, 967
FauNDI CATATG 1 cut(s) 921
Fnu4HI GCNGC 6 cut(s) 27, 349, 465, 840, 1048, 1200
FokI GGATG 2 cut(s) 841, 1021
FriOI GRGCYC 1 cut(s) 335
Fsp4HI GCNGC 6 cut(s) 27, 349, 465, 840, 1048, 1200
FspBI CTAG 2 cut(s) 48, 90
GlaI GCGC 3 cut(s) 137, 1051, 1081
GluI GCNGC 6 cut(s) 27, 349, 465, 840, 1048, 1200
GsuI CTGGAG 1 cut(s) 747
HaeII RGCGCY 1 cut(s) 1083
HaeIII GGCC 4 cut(s) 10, 20, 464, 936
HapII CCGG 3 cut(s) 482, 912, 974
HgaI GACGC 2 cut(s) 289, 590
HhaI GCGC 3 cut(s) 138, 1052, 1082
Hin1I GRCGYC 1 cut(s) 582
Hin1II CATG 4 cut(s) 15, 853, 871, 971
Hin6I GCGC 3 cut(s) 136, 1050, 1080
HinP1I GCGC 3 cut(s) 136, 1050, 1080
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HpaI GTTAAC 1 cut(s) 115
HpaII CCGG 3 cut(s) 482, 912, 974
HphI GGTGA 5 cut(s) 365, 381, 713, 1108, 1240
Hpy166II GTNNAC 5 cut(s) 115, 514, 580, 1069, 1231
Hpy188I TCNGA 8 cut(s) 204, 289, 330, 384, 787, 846, 895, 1196
Hpy188III TCNNGA 8 cut(s) 336, 343, 368, 764, 968, 995, 1123, 1238
Hpy8I GTNNAC 5 cut(s) 115, 514, 580, 1069, 1231
Hpy99I CGWCG 2 cut(s) 180, 253
HpyAV CCTTC 7 cut(s) 350, 403, 421, 530, 947, 1129, 1235
HpyCH4III ACNGT 4 cut(s) 379, 673, 865, 1064
HpyCH4IV ACGT 3 cut(s) 175, 291, 362
HpyCH4V TGCA 4 cut(s) 509, 839, 1139, 1186
HpyF10VI GCNNNNNNNGC 7 cut(s) 26, 216, 225, 419, 569, 683, 1056
HpyF3I CTNAG 5 cut(s) 231, 660, 843, 892, 1106
HpySE526I ACGT 3 cut(s) 175, 291, 362
Hsp92I GRCGYC 1 cut(s) 582
Hsp92II CATG 4 cut(s) 15, 853, 871, 971
HspAI GCGC 3 cut(s) 136, 1050, 1080
KspAI GTTAAC 1 cut(s) 115
Kzo9I GATC 3 cut(s) 284, 895, 997
LmnI GCTCC 2 cut(s) 330, 1196
Lsp1109I GCAGC 4 cut(s) 13, 851, 1059, 1211
LweI GCATC 3 cut(s) 695, 819, 1148
MaeI CTAG 2 cut(s) 48, 90
MaeII ACGT 3 cut(s) 175, 291, 362
MaeIII GTNAC 3 cut(s) 615, 778, 1204
MalI GATC 3 cut(s) 286, 897, 999
MbiI CCGCTC 1 cut(s) 348
MboI GATC 3 cut(s) 284, 895, 997
MboII GAAGA 9 cut(s) 24, 27, 33, 36, 246, 249, 326, 448, 983
MfeI CAATTG 1 cut(s) 708
MflI RGATCY 2 cut(s) 895, 997
MhlI GDGCHC 1 cut(s) 335
MlsI TGGCCA 1 cut(s) 10
MluCI AATT 6 cut(s) 100, 477, 651, 708, 796, 900
MluNI TGGCCA 1 cut(s) 10
MlyI GAGTC 2 cut(s) 146, 713
MmeI TCCRAC 2 cut(s) 256, 1174
MnlI CCTC 8 cut(s) 49, 226, 313, 722, 760, 951, 1172, 1189
Mox20I TGGCCA 1 cut(s) 10
MscI TGGCCA 1 cut(s) 10
MseI TTAA 5 cut(s) 114, 126, 171, 476, 981
MslI CAYNNNNRTG 1 cut(s) 866
Msp20I TGGCCA 1 cut(s) 10
MspI CCGG 3 cut(s) 482, 912, 974
MspR9I CCNGG 2 cut(s) 596, 974
MunI CAATTG 1 cut(s) 708
Mva1269I GAATGC 1 cut(s) 302
MvaI CCWGG 1 cut(s) 596
MvnI CGCG 1 cut(s) 467
MwoI GCNNNNNNNGC 7 cut(s) 26, 216, 225, 419, 569, 683, 1056
NciI CCSGG 1 cut(s) 974
NcoI CCATGG 1 cut(s) 11
NdeI CATATG 1 cut(s) 921
NdeII GATC 3 cut(s) 284, 895, 997
NlaIII CATG 4 cut(s) 15, 853, 871, 971
NlaIV GGNNCC 1 cut(s) 771
NmuCI GTSAC 1 cut(s) 1204
PagI TCATGA 1 cut(s) 967
PcsI WCGNNNNNNNCGW 2 cut(s) 257, 297
PctI GAATGC 1 cut(s) 302
PfeI GAWTC 8 cut(s) 147, 180, 191, 242, 325, 339, 540, 656
PinAI ACCGGT 1 cut(s) 911
PkrI GCNGC 6 cut(s) 28, 350, 466, 841, 1049, 1201
PleI GAGTC 2 cut(s) 146, 712
PpsI GAGTC 2 cut(s) 146, 712
PshAI GACNNNNGTC 1 cut(s) 1211
PsiI TTATAA 1 cut(s) 962
Psp124BI GAGCTC 1 cut(s) 335
Psp1406I AACGTT 1 cut(s) 362
Psp6I CCWGG 1 cut(s) 594
PspGI CCWGG 1 cut(s) 594
PspN4I GGNNCC 1 cut(s) 771
PspPI GGNCC 1 cut(s) 449
PstNI CAGNNNCTG 1 cut(s) 667
PsuI RGATCY 2 cut(s) 895, 997
RsaI GTAC 1 cut(s) 1160
RsaNI GTAC 1 cut(s) 1159
RseI CAYNNNNRTG 1 cut(s) 866
SacI GAGCTC 1 cut(s) 335
SaqAI TTAA 5 cut(s) 114, 126, 171, 476, 981
SatI GCNGC 6 cut(s) 27, 349, 465, 840, 1048, 1200
Sau3AI GATC 3 cut(s) 284, 895, 997
Sau96I GGNCC 1 cut(s) 449
SchI GAGTC 2 cut(s) 146, 713
ScrFI CCNGG 2 cut(s) 596, 974
SduI GDGCHC 1 cut(s) 335
SfaNI GCATC 3 cut(s) 695, 819, 1148
SfcI CTRYAG 3 cut(s) 264, 672, 1075
SinI GGWCC 1 cut(s) 449
SmiMI CAYNNNNRTG 1 cut(s) 866
SmlI CTYRAG 3 cut(s) 343, 609, 764
SmoI CTYRAG 3 cut(s) 343, 609, 764
Sse9I AATT 6 cut(s) 100, 477, 651, 708, 796, 900
SsiI CCGC 3 cut(s) 348, 351, 465
SspMI CTAG 2 cut(s) 48, 90
SstI GAGCTC 1 cut(s) 335
StyD4I CCNGG 2 cut(s) 594, 972
StyI CCWWGG 1 cut(s) 11
TaaI ACNGT 4 cut(s) 379, 673, 865, 1064
TaiI ACGT 3 cut(s) 178, 294, 365
TaqI TCGA 4 cut(s) 150, 155, 178, 874
TasI AATT 6 cut(s) 100, 477, 651, 708, 796, 900
TauI GCSGC 2 cut(s) 351, 467
TfiI GAWTC 8 cut(s) 147, 180, 191, 242, 325, 339, 540, 656
Tru1I TTAA 5 cut(s) 114, 126, 171, 476, 981
Tru9I TTAA 5 cut(s) 114, 126, 171, 476, 981
TscAI CASTG 4 cut(s) 235, 672, 868, 1209
TseFI GTSAC 1 cut(s) 1204
TseI GCWGC 4 cut(s) 26, 839, 1047, 1199
Tsp45I GTSAC 1 cut(s) 1204
TspDTI ATGAA 1 cut(s) 440
TspGWI ACGGA 1 cut(s) 184
TspRI CASTG 4 cut(s) 235, 672, 868, 1209
VpaK11BI GGWCC 1 cut(s) 449
XapI RAATTY 1 cut(s) 100
XspI CTAG 2 cut(s) 48, 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.