Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011299.1

Orthogroup ID

OG0009436

Physical Location & Seq

Genomic Coordinates Forward (+)

43771 .. 46266

Gene Structure 2496 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011299.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

atggaggtcggtttggacgtggccgcgccggtgattggggccgaggctggaggggtgagcgagccacggggccgatgctggagggagcacgttgcagcaacgagatcggaagcttgctgctgcgatcggtgctactgtaaggctgggatgatgaatgcgcgcaaatctgggctgagtatgagcgagaatctgggctgggcgagggagcagcgccgttgcaggtgggttgcaggtgatcgactggagaagataaagtcgatctgggacactggcgagcaggatgaggccgcgccggtgagcaggattggacctcgtcagagctgggaactgaaacaggacagaaatcccgtccgggtcgggtccagtcataatcgcaaaccaccaacgcacccgaatccacataataactactacaagtccattcattttggtgccaattgcactggcagtagcggtagtgagaccaccgagctcgaagattcgtctgacatcgttgattgtgtgggaacagggcaagacgacgtagtagagtccgtggtcacagccgaagaaactggtggtcctggattggaactggaattactagaacaagtgctagaatgggcagtactggtctctcccttcttcttttggggtacggctatggtggccatgaaggggattctgccaaagacgggccctttcttcatctcagccttccgtctgattcctgctggctttctcctcgttgccttcgccgcctacagaggccggccctttccctctggcctcaccgcttggctttctattgcgcttttcggcctcgttgatgctgcttgttttcaaggatttcttgctcaaggtttgcagaggacatctgctggtcttggcagcgttataattgattcacaacctttgacagtcgctatacttgcggccttgttatttggtgagtccattggcttccttggagctgcagggcttgttcttggcgtcattggacttttacttcttgaggtaaatctttcccaacccaaattgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

340

Amino Acids

36.48

Weight (kDa)

5.51

Isoelectric Point (pI)

40.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02690
fragaria_vesca	FvH4_5g39720 FvH4_5g39720 FvH4_5g39720 FvH4_5g39720
malus_domestica	MD09G1187600.v1.1
prunus_persica	Prupe.8G267800_v2.0.a1 Prupe.8G267800_v2.0.a1 Prupe.8G267800_v2.0.a1
pyrus_communis	pycom11g27780
rosa_chinensis	RchiOBHm_Chr7g0242021
rosa_laevigata	RLG00000000516
rosa_multiflora	Rmu_co8506403.1_g000001 Rmu_sc0003559.1_g000016 Rmu_sc0011299.1_g000014
rosa_roxburghii	Rroxscaffold_3G00218270
rosa_rugosa	Rorug07G0349800
rosa_samantha	Rh7AG504600 Rh7BG476400 Rh7CG521100 Rh7DG490200
rosa_wichuraiana	Rw7G042650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	878
AarI	CACCTGC	2 cut(s)	210, 221
Acc36I	ACCTGC	2 cut(s)	210, 221
AccB1I	GGYRCC	1 cut(s)	431
AccII	CGCG	3 cut(s)	26, 160, 290
AciI	CCGC	6 cut(s)	24, 288, 453, 738, 774, 914
AcoI	YGGCCR	2 cut(s)	21, 648
AcyI	GRCGYC	1 cut(s)	972
AfaI	GTAC	2 cut(s)	609, 637
AfiI	CCNNNNNNNGG	3 cut(s)	35, 657, 674
AgsI	TTSAA	1 cut(s)	824
AjiI	CACGTC	1 cut(s)	19
AjnI	CCWGG	1 cut(s)	562
AluBI	AGCT	4 cut(s)	113, 321, 472, 953
AluI	AGCT	4 cut(s)	113, 321, 472, 953
Alw21I	GWGCWC	2 cut(s)	90, 474
Alw26I	GTCTC	2 cut(s)	455, 619
ApaI	GGGCCC	1 cut(s)	680
ApeKI	GCWGC	7 cut(s)	95, 117, 120, 208, 812, 870, 953
AspLEI	GCGC	6 cut(s)	28, 160, 162, 213, 292, 793
AspS9I	GGNCC	8 cut(s)	39, 70, 308, 360, 560, 676, 677, 753
AsuC2I	CCSGG	1 cut(s)	353
AsuHPI	GGTGA	6 cut(s)	43, 67, 245, 307, 763, 941
AvaII	GGWCC	3 cut(s)	308, 360, 560
BaeGI	GKGCMC	1 cut(s)	680
BalI	TGGCCA	1 cut(s)	650
BanI	GGYRCC	1 cut(s)	431
BanII	GRGCYC	2 cut(s)	474, 680
Bbv12I	GWGCWC	2 cut(s)	90, 474
BbvI	GCAGC	7 cut(s)	104, 107, 107, 220, 799, 882, 940
BceAI	ACGGC	2 cut(s)	198, 654
BcgI	CGANNNNNNTGC	2 cut(s)	87, 121
BciT130I	CCWGG	1 cut(s)	564
BcnI	CCSGG	1 cut(s)	353
BcoDI	GTCTC	2 cut(s)	455, 619
BfaI	CTAG	2 cut(s)	584, 596
BfmI	CTRYAG	2 cut(s)	742, 954
BfoI	RGCGCY	1 cut(s)	214
BfuAI	ACCTGC	2 cut(s)	210, 221
BmcAI	AGTACT	1 cut(s)	609
Bme1390I	CCNGG	2 cut(s)	353, 564
Bme18I	GGWCC	3 cut(s)	308, 360, 560
BmgBI	CACGTC	1 cut(s)	19
BmgT120I	GGNCC	8 cut(s)	39, 70, 308, 360, 560, 676, 677, 753
BmiI	GGNNCC	5 cut(s)	40, 71, 361, 433, 678
BmrFI	CCNGG	2 cut(s)	353, 564
BmsI	GCATC	2 cut(s)	65, 799
BpmI	CTGGAG	3 cut(s)	69, 100, 263
BpuEI	CTTGAG	2 cut(s)	822, 1013
BpuMI	CCSGG	1 cut(s)	353
BsaHI	GRCGYC	1 cut(s)	972
BsaI	GGTCTC	2 cut(s)	455, 619
BsaJI	CCNNGG	4 cut(s)	42, 65, 534, 946
Bsc4I	CCNNNNNNNGG	3 cut(s)	35, 657, 674
Bse118I	RCCGGY	3 cut(s)	28, 292, 750
Bse1I	ACTGG	7 cut(s)	246, 274, 363, 448, 559, 579, 615
BseBI	CCWGG	1 cut(s)	564
BseDI	CCNNGG	4 cut(s)	42, 65, 534, 946
BseGI	GGATG	2 cut(s)	153, 286
BseLI	CCNNNNNNNGG	3 cut(s)	35, 657, 674
BseMII	CTCAG	2 cut(s)	164, 705
BseNI	ACTGG	7 cut(s)	246, 274, 363, 448, 559, 579, 615
BsePI	GCGCGC	1 cut(s)	158
BseRI	GAGGAG	1 cut(s)	713
BseSI	GKGCMC	1 cut(s)	680
BseXI	GCAGC	7 cut(s)	104, 107, 107, 220, 799, 882, 940
BseYI	CCCAGC	3 cut(s)	143, 195, 321
Bsh1236I	CGCG	3 cut(s)	26, 160, 290
Bsh1285I	CGRYCG	1 cut(s)	127
BshNI	GGYRCC	1 cut(s)	431
BsiEI	CGRYCG	1 cut(s)	127
BsiHKAI	GWGCWC	2 cut(s)	90, 474
BsiSI	CCGG	4 cut(s)	29, 293, 352, 751
BslFI	GGGAC	1 cut(s)	278
BslI	CCNNNNNNNGG	3 cut(s)	35, 657, 674
BsmAI	GTCTC	2 cut(s)	455, 619
BsmFI	GGGAC	1 cut(s)	278
BsmI	GAATGC	1 cut(s)	160
Bso31I	GGTCTC	2 cut(s)	455, 619
Bsp120I	GGGCCC	1 cut(s)	676
Bsp1286I	GDGCHC	3 cut(s)	90, 474, 680
Bsp143I	GATC	4 cut(s)	104, 124, 235, 258
BspACI	CCGC	6 cut(s)	24, 288, 453, 738, 774, 914
BspCNI	CTCAG	2 cut(s)	165, 704
BspFNI	CGCG	3 cut(s)	26, 160, 290
BspLI	GGNNCC	5 cut(s)	40, 71, 361, 433, 678
BspMAI	CTGCAG	1 cut(s)	958
BspMI	ACCTGC	2 cut(s)	210, 221
BspT107I	GGYRCC	1 cut(s)	431
BspTNI	GGTCTC	2 cut(s)	455, 619
BsrFI	RCCGGY	3 cut(s)	28, 292, 750
BsrI	ACTGG	7 cut(s)	246, 274, 363, 448, 559, 579, 615
BssAI	RCCGGY	3 cut(s)	28, 292, 750
BssECI	CCNNGG	4 cut(s)	42, 65, 534, 946
BssHII	GCGCGC	1 cut(s)	158
BssMI	GATC	4 cut(s)	104, 124, 235, 258
BssNI	GRCGYC	1 cut(s)	972
BssT1I	CCWWGG	1 cut(s)	946
Bst2UI	CCWGG	1 cut(s)	564
Bst4CI	ACNGT	2 cut(s)	137, 901
BstACI	GRCGYC	1 cut(s)	972
BstC8I	GCNNGC	6 cut(s)	62, 115, 160, 275, 715, 752
BstDEI	CTNAG	2 cut(s)	173, 691
BstDSI	CCRYGG	2 cut(s)	65, 534
BstF5I	GGATG	2 cut(s)	153, 286
BstFNI	CGCG	3 cut(s)	26, 160, 290
BstH2I	RGCGCY	1 cut(s)	214
BstHHI	GCGC	6 cut(s)	28, 160, 162, 213, 292, 793
BstKTI	GATC	4 cut(s)	107, 127, 238, 261
BstMAI	GTCTC	2 cut(s)	455, 619
BstMBI	GATC	4 cut(s)	104, 124, 235, 258
BstMCI	CGRYCG	1 cut(s)	127
BstMWI	GCNNNNNNNGC	4 cut(s)	129, 647, 737, 911
BstNI	CCWGG	1 cut(s)	564
BstSCI	CCNGG	2 cut(s)	351, 562
BstSFI	CTRYAG	2 cut(s)	742, 954
BstSLI	GKGCMC	1 cut(s)	680
BstUI	CGCG	3 cut(s)	26, 160, 290
BstV1I	GCAGC	7 cut(s)	104, 107, 107, 220, 799, 882, 940
BtgI	CCRYGG	2 cut(s)	65, 534
BtrI	CACGTC	1 cut(s)	19
BtsCI	GGATG	2 cut(s)	153, 286
BtsIMutI	CAGTG	2 cut(s)	267, 441
BveI	ACCTGC	2 cut(s)	210, 221
Cac8I	GCNNGC	6 cut(s)	62, 115, 160, 275, 715, 752
CfoI	GCGC	6 cut(s)	28, 160, 162, 213, 292, 793
Cfr10I	RCCGGY	3 cut(s)	28, 292, 750
Cfr13I	GGNCC	8 cut(s)	39, 70, 308, 360, 560, 676, 677, 753
CseI	GACGC	1 cut(s)	961
Csp6I	GTAC	2 cut(s)	608, 636
CviAII	CATG	1 cut(s)	652
CviQI	GTAC	2 cut(s)	608, 636
DdeI	CTNAG	2 cut(s)	173, 691
DpnI	GATC	4 cut(s)	106, 126, 237, 260
DpnII	GATC	4 cut(s)	104, 124, 235, 258
EaeI	YGGCCR	2 cut(s)	21, 648
Ecl136II	GAGCTC	1 cut(s)	472
Eco130I	CCWWGG	1 cut(s)	946
Eco24I	GRGCYC	2 cut(s)	474, 680
Eco31I	GGTCTC	2 cut(s)	455, 619
Eco47I	GGWCC	3 cut(s)	308, 360, 560
Eco53kI	GAGCTC	1 cut(s)	472
EcoICRI	GAGCTC	1 cut(s)	472
EcoO109I	RGGNCCY	1 cut(s)	677
EcoRII	CCWGG	1 cut(s)	562
EcoT14I	CCWWGG	1 cut(s)	946
EcoT38I	GRGCYC	2 cut(s)	474, 680
ErhI	CCWWGG	1 cut(s)	946
FaeI	CATG	1 cut(s)	655
FaiI	YATR	7 cut(s)	179, 369, 402, 644, 653, 878, 908
FalI	AAGNNNNNCTT	2 cut(s)	816, 848
FaqI	GGGAC	1 cut(s)	278
FatI	CATG	1 cut(s)	651
FokI	GGATG	2 cut(s)	160, 293
FriOI	GRGCYC	2 cut(s)	474, 680
FseI	GGCCGGCC	1 cut(s)	754
FspBI	CTAG	2 cut(s)	584, 596
GlaI	GCGC	6 cut(s)	27, 159, 161, 212, 291, 792
GsaI	CCCAGC	3 cut(s)	147, 199, 325
GsuI	CTGGAG	3 cut(s)	69, 100, 263
HaeII	RGCGCY	1 cut(s)	214
HapII	CCGG	4 cut(s)	29, 293, 352, 751
HgaI	GACGC	1 cut(s)	961
HhaI	GCGC	6 cut(s)	28, 160, 162, 213, 292, 793
Hin1I	GRCGYC	1 cut(s)	972
Hin1II	CATG	1 cut(s)	655
Hin6I	GCGC	6 cut(s)	26, 158, 160, 211, 290, 791
HinP1I	GCGC	6 cut(s)	26, 158, 160, 211, 290, 791
HindIII	AAGCTT	1 cut(s)	111
HinfI	GANTC	8 cut(s)	187, 394, 479, 530, 661, 706, 884, 932
HpaII	CCGG	4 cut(s)	29, 293, 352, 751
HphI	GGTGA	6 cut(s)	43, 67, 245, 307, 763, 941
Hpy188I	TCNGA	4 cut(s)	109, 318, 487, 705
Hpy188III	TCNNGA	1 cut(s)	992
Hpy99I	CGWCG	1 cut(s)	524
HpyAV	CCTTC	4 cut(s)	631, 649, 706, 742
HpyCH4III	ACNGT	2 cut(s)	137, 901
HpyCH4IV	ACGT	3 cut(s)	18, 90, 522
HpyCH4V	TGCA	6 cut(s)	95, 219, 230, 441, 847, 956
HpyF10VI	GCNNNNNNNGC	4 cut(s)	129, 647, 737, 911
HpyF3I	CTNAG	2 cut(s)	173, 691
HpySE526I	ACGT	3 cut(s)	18, 90, 522
Hsp92I	GRCGYC	1 cut(s)	972
Hsp92II	CATG	1 cut(s)	655
HspAI	GCGC	6 cut(s)	26, 158, 160, 211, 290, 791
KroI	GCCGGC	1 cut(s)	750
KroNI	GCCGGC	1 cut(s)	752
Kzo9I	GATC	4 cut(s)	104, 124, 235, 258
LmnI	GCTCC	3 cut(s)	85, 205, 950
Lsp1109I	GCAGC	7 cut(s)	104, 107, 107, 220, 799, 882, 940
LweI	GCATC	2 cut(s)	65, 799
MaeI	CTAG	2 cut(s)	584, 596
MaeII	ACGT	3 cut(s)	18, 90, 522
MaeIII	GTNAC	1 cut(s)	538
MalI	GATC	4 cut(s)	106, 126, 237, 260
MboI	GATC	4 cut(s)	104, 124, 235, 258
MboII	GAAGA	5 cut(s)	259, 488, 560, 616, 676
MfeI	CAATTG	1 cut(s)	436
MhlI	GDGCHC	3 cut(s)	90, 474, 680
MlsI	TGGCCA	1 cut(s)	650
MluCI	AATT	4 cut(s)	436, 578, 879, 1016
MluNI	TGGCCA	1 cut(s)	650
MlyI	GAGTC	2 cut(s)	539, 941
Mox20I	TGGCCA	1 cut(s)	650
MroNI	GCCGGC	1 cut(s)	750
MscI	TGGCCA	1 cut(s)	650
MslI	CAYNNNNRTG	1 cut(s)	429
Msp20I	TGGCCA	1 cut(s)	650
MspI	CCGG	4 cut(s)	29, 293, 352, 751
MspR9I	CCNGG	2 cut(s)	353, 564
MunI	CAATTG	1 cut(s)	436
Mva1269I	GAATGC	1 cut(s)	160
MvaI	CCWGG	1 cut(s)	564
MvnI	CGCG	3 cut(s)	26, 160, 290
MwoI	GCNNNNNNNGC	4 cut(s)	129, 647, 737, 911
NaeI	GCCGGC	1 cut(s)	752
NciI	CCSGG	1 cut(s)	353
NdeII	GATC	4 cut(s)	104, 124, 235, 258
NgoMIV	GCCGGC	1 cut(s)	750
NlaIII	CATG	1 cut(s)	655
NlaIV	GGNNCC	5 cut(s)	40, 71, 361, 433, 678
NmeAIII	GCCGAG	1 cut(s)	67
NmuCI	GTSAC	1 cut(s)	538
PaqCI	CACCTGC	2 cut(s)	210, 221
PauI	GCGCGC	1 cut(s)	158
PcsI	WCGNNNNNNNCGW	1 cut(s)	15
PctI	GAATGC	1 cut(s)	160
PdiI	GCCGGC	1 cut(s)	752
PfeI	GAWTC	6 cut(s)	187, 394, 479, 661, 706, 884
PflFI	GACNNNGTC	1 cut(s)	312
PfoI	TCCNGGA	1 cut(s)	562
Ple19I	CGATCG	1 cut(s)	127
PleI	GAGTC	2 cut(s)	538, 940
PpsI	GAGTC	2 cut(s)	538, 940
PsiI	TTATAA	1 cut(s)	878
Psp124BI	GAGCTC	1 cut(s)	474
Psp6I	CCWGG	1 cut(s)	562
PspFI	CCCAGC	3 cut(s)	143, 195, 321
PspGI	CCWGG	1 cut(s)	562
PspN4I	GGNNCC	5 cut(s)	40, 71, 361, 433, 678
PspOMI	GGGCCC	1 cut(s)	676
PspPI	GGNCC	8 cut(s)	39, 70, 308, 360, 560, 676, 677, 753
PsrI	GAACNNNNNNTAC	2 cut(s)	564, 596
PstI	CTGCAG	1 cut(s)	958
PsyI	GACNNNGTC	1 cut(s)	312
PteI	GCGCGC	1 cut(s)	158
PvuI	CGATCG	1 cut(s)	127
RigI	GGCCGGCC	1 cut(s)	754
RsaI	GTAC	2 cut(s)	609, 637
RsaNI	GTAC	2 cut(s)	608, 636
RseI	CAYNNNNRTG	1 cut(s)	429
SacI	GAGCTC	1 cut(s)	474
Sau3AI	GATC	4 cut(s)	104, 124, 235, 258
Sau96I	GGNCC	8 cut(s)	39, 70, 308, 360, 560, 676, 677, 753
ScaI	AGTACT	1 cut(s)	609
SchI	GAGTC	2 cut(s)	539, 941
ScrFI	CCNGG	2 cut(s)	353, 564
SduI	GDGCHC	3 cut(s)	90, 474, 680
SfaNI	GCATC	2 cut(s)	65, 799
SfcI	CTRYAG	2 cut(s)	742, 954
SgrAI	CRCCGGYG	2 cut(s)	28, 292
SinI	GGWCC	3 cut(s)	308, 360, 560
SmiMI	CAYNNNNRTG	1 cut(s)	429
SmlI	CTYRAG	2 cut(s)	837, 992
SmoI	CTYRAG	2 cut(s)	837, 992
Sse9I	AATT	4 cut(s)	436, 578, 879, 1016
SsiI	CCGC	6 cut(s)	24, 288, 453, 738, 774, 914
SspMI	CTAG	2 cut(s)	584, 596
SstI	GAGCTC	1 cut(s)	474
StyD4I	CCNGG	2 cut(s)	351, 562
StyI	CCWWGG	1 cut(s)	946
TaaI	ACNGT	2 cut(s)	137, 901
TaiI	ACGT	3 cut(s)	21, 93, 525
TaqI	TCGA	3 cut(s)	238, 257, 474
TasI	AATT	4 cut(s)	436, 578, 879, 1016
TatI	WGTACW	1 cut(s)	607
TauI	GCSGC	4 cut(s)	26, 290, 740, 917
TfiI	GAWTC	6 cut(s)	187, 394, 479, 661, 706, 884
TscAI	CASTG	2 cut(s)	274, 448
TseFI	GTSAC	1 cut(s)	538
TseI	GCWGC	7 cut(s)	95, 117, 120, 208, 812, 870, 953
Tsp45I	GTSAC	1 cut(s)	538
TspDTI	ATGAA	4 cut(s)	167, 413, 668, 676
TspGWI	ACGGA	2 cut(s)	523, 689
TspRI	CASTG	2 cut(s)	274, 448
Tth111I	GACNNNGTC	1 cut(s)	312
VpaK11BI	GGWCC	3 cut(s)	308, 360, 560
XspI	CTAG	2 cut(s)	584, 596
ZrmI	AGTACT	1 cut(s)	609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.