Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0009436

Physical Location & Seq

Genomic Coordinates Forward (+)

448093 .. 454755

Gene Structure 6663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00218270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGGGGTTGTTATCCTCAGTTTCTGCTTGCTACCGTTGTGGCTGTTATTACGACCCTGGGACTGTTCGGCGGCCGAATTTAGATCGACGTTTGGTTAATGGTATCAGTTGGGCAAGGAAAGCGCTATCGTATTCTAATTGCCTCCTTATTTCTCAATATAATCATAATCGCAAACCACCAACGCACCCGAATCCAGACAATAACTACTACAAGTCCATTCATTTTGGTGCCAATTGCACTGGCGGTAGCGGTAGTGAGACCACCGAGCTCGAAGATTCGTCTGACATCGTTGATTGTGTGGGAACAGGGCAAGACGGCGTAGAGTGCGTGTTCACAACAGAAGAAACTGGTGGTCCTGGATTGCAACTGGAGTTAGTAGAACAAGTGCAAGAATGGGCAGTACTGGTCTCTCCCTTCTTCTTTTGGGGTACGGCTATGGTGGTCATGAAGGGGATTCTGCCAAAGACCGGCCCTTTCTTCATCTCAGCCTTCCGTCTAATTCCTGCTGGCTTTCTCCTCGTTGCCTTCGCCGCCTACAGAGGCCGCCCCTTTCCCTCTGGCCTCACCGCTTGGCTTTCTATTGCGCTTTTCGGCCTCGTTGATGCTGCTTGTTTTCAAGGATTTCTTGCTCAAGGTTTGCAGAGGACATCTGCTGGTCTTGGCAGCGTTATAATTGATTCACAACCTTTGACAGTCGCTATACTTGCGGCCTTGTTATTTGGTGAGTCCATTGGCTTCCTTGGAGCTGCAGGGCTTGTTCTTGGCGTCATTGGACTTTTACTTCTTGAGGCACCTTCACTTGCTTTGGATGGAAGTAACTCTTCATTGTGGCAAAGTGGGGAGTGGTGGATGCTTCTCTCAGCTCAGAGCATGGCAGTTGGTACAGTCATGGTGCGTTGGGTTTCCAAATACTCTGATCCTATTATGGCAACTGGATGGCATATGGTTATTGGAGGCCTGCCTCTTGTTATAATCTCGATTCTTAATCATGACAATGCTGTCAGCGGGAGTCTCATCGAGTTCACAGCAAATGATACATTGGCACTCTTTTATACATCCATTTTTGGAAGTGCCATCAGCTATGGTGTATACTTCTACAGTGCAACAAAAGGTAGCCTGACAAAGCTCAGCTCCCTCACCTTTCTAACCCCAATGTTTGCTTCCATATTTGGGTTTCTATATCTTGGTGAGACCTTCTCACCCTTGCAACTGGGTGGAGCCATGATTACTATTGTTGGAATATACTTGGTTAACTACAAAACCATTGTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

424

Amino Acids

45.51

Weight (kDa)

5.28

Isoelectric Point (pI)

37.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	136 - 262	3.1e-23	EamA-like transporter family
EamA	PF00892	279 - 418	8.9e-26	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02690
fragaria_vesca	FvH4_5g39720 FvH4_5g39720 FvH4_5g39720 FvH4_5g39720
malus_domestica	MD09G1187600.v1.1
prunus_persica	Prupe.8G267800_v2.0.a1 Prupe.8G267800_v2.0.a1 Prupe.8G267800_v2.0.a1
pyrus_communis	pycom11g27780
rosa_chinensis	RchiOBHm_Chr7g0242021
rosa_laevigata	RLG00000000516
rosa_multiflora	Rmu_co8506403.1_g000001 Rmu_sc0003559.1_g000016 Rmu_sc0011299.1_g000014
rosa_roxburghii	Rroxscaffold_3G00218270
rosa_rugosa	Rorug07G0349800
rosa_samantha	Rh7AG504600 Rh7BG476400 Rh7CG521100 Rh7DG490200
rosa_wichuraiana	Rw7G042650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	671, 971
AasI	GACNNNNNNGTC	1 cut(s)	998
AccB1I	GGYRCC	2 cut(s)	227, 790
AccI	GTMKAC	1 cut(s)	1089
AciI	CCGC	8 cut(s)	70, 243, 249, 531, 544, 567, 707, 1005
AclWI	GGATC	1 cut(s)	911
AcoI	YGGCCR	1 cut(s)	71
AcsI	RAATTY	1 cut(s)	76
AcyI	GRCGYC	1 cut(s)	765
AfaI	GTAC	3 cut(s)	402, 430, 883
AfeI	AGCGCT	1 cut(s)	123
AfiI	CCNNNNNNNGG	2 cut(s)	467, 1170
AgsI	TTSAA	2 cut(s)	617, 1271
AjnI	CCWGG	2 cut(s)	55, 355
AjuI	GAANNNNNNNTTGG	2 cut(s)	1144, 1176
AluBI	AGCT	6 cut(s)	268, 746, 863, 1080, 1126, 1131
AluI	AGCT	6 cut(s)	268, 746, 863, 1080, 1126, 1131
Alw21I	GWGCWC	1 cut(s)	270
Alw26I	GTCTC	4 cut(s)	251, 412, 1016, 1184
AlwI	GGATC	1 cut(s)	911
AlwNI	CAGNNNCTG	1 cut(s)	23
Aor51HI	AGCGCT	1 cut(s)	123
AoxI	GGCC	7 cut(s)	71, 469, 541, 559, 592, 708, 955
ApeKI	GCWGC	3 cut(s)	605, 663, 746
ApoI	RAATTY	1 cut(s)	76
AspLEI	GCGC	2 cut(s)	124, 586
AspS9I	GGNCC	2 cut(s)	353, 470
AsuHPI	GGTGA	5 cut(s)	556, 734, 1129, 1191, 1199
AvaII	GGWCC	1 cut(s)	353
BanI	GGYRCC	2 cut(s)	227, 790
BanII	GRGCYC	1 cut(s)	270
Bbv12I	GWGCWC	1 cut(s)	270
BbvI	GCAGC	3 cut(s)	592, 675, 733
BccI	CCATC	3 cut(s)	803, 930, 1082
BceAI	ACGGC	2 cut(s)	331, 447
BciT130I	CCWGG	2 cut(s)	57, 357
BcoDI	GTCTC	4 cut(s)	251, 412, 1016, 1184
BfmI	CTRYAG	3 cut(s)	535, 747, 1096
BfoI	RGCGCY	1 cut(s)	125
BisI	GCNGC	7 cut(s)	71, 531, 544, 606, 664, 708, 747
BlpI	GCTNAGC	1 cut(s)	1127
BlsI	GCNGC	7 cut(s)	72, 532, 545, 607, 665, 709, 748
BmcAI	AGTACT	1 cut(s)	402
Bme1390I	CCNGG	2 cut(s)	57, 357
Bme18I	GGWCC	1 cut(s)	353
BmgT120I	GGNCC	2 cut(s)	353, 470
BmiI	GGNNCC	3 cut(s)	229, 792, 1219
BmrFI	CCNGG	2 cut(s)	57, 357
BmrI	ACTGGG	1 cut(s)	1220
BmsI	GCATC	2 cut(s)	592, 840
BmuI	ACTGGG	1 cut(s)	1220
BplI	GAGNNNNNCTC	2 cut(s)	1181, 1213
BpmI	CTGGAG	1 cut(s)	389
Bpu1102I	GCTNAGC	1 cut(s)	1127
BpuEI	CTTGAG	2 cut(s)	615, 806
BsaHI	GRCGYC	1 cut(s)	765
BsaI	GGTCTC	3 cut(s)	251, 412, 1184
BsaJI	CCNNGG	3 cut(s)	55, 56, 739
Bsc4I	CCNNNNNNNGG	2 cut(s)	467, 1170
Bse118I	RCCGGY	1 cut(s)	467
Bse1I	ACTGG	6 cut(s)	244, 352, 372, 408, 937, 1215
BseBI	CCWGG	2 cut(s)	57, 357
BseDI	CCNNGG	3 cut(s)	55, 56, 739
BseGI	GGATG	4 cut(s)	814, 855, 941, 1055
BseLI	CCNNNNNNNGG	2 cut(s)	467, 1170
BseMII	CTCAG	5 cut(s)	30, 498, 873, 878, 1141
BseNI	ACTGG	6 cut(s)	244, 352, 372, 408, 937, 1215
BseRI	GAGGAG	1 cut(s)	506
BseX3I	CGGCCG	1 cut(s)	71
BseXI	GCAGC	3 cut(s)	592, 675, 733
Bsh1285I	CGRYCG	1 cut(s)	74
BshFI	GGCC	7 cut(s)	73, 471, 543, 561, 594, 710, 957
BshNI	GGYRCC	2 cut(s)	227, 790
BsiEI	CGRYCG	1 cut(s)	74
BsiHKAI	GWGCWC	1 cut(s)	270
BsiSI	CCGG	1 cut(s)	468
BslFI	GGGAC	1 cut(s)	73
BslI	CCNNNNNNNGG	2 cut(s)	467, 1170
BsmAI	GTCTC	4 cut(s)	251, 412, 1016, 1184
BsmFI	GGGAC	1 cut(s)	73
BsnI	GGCC	7 cut(s)	73, 471, 543, 561, 594, 710, 957
Bso31I	GGTCTC	3 cut(s)	251, 412, 1184
Bsp1286I	GDGCHC	1 cut(s)	270
Bsp143I	GATC	2 cut(s)	82, 916
Bsp1720I	GCTNAGC	1 cut(s)	1127
BspACI	CCGC	8 cut(s)	70, 243, 249, 531, 544, 567, 707, 1005
BspANI	GGCC	7 cut(s)	73, 471, 543, 561, 594, 710, 957
BspCNI	CTCAG	5 cut(s)	29, 497, 872, 877, 1140
BspHI	TCATGA	2 cut(s)	444, 988
BspLI	GGNNCC	3 cut(s)	229, 792, 1219
BspMAI	CTGCAG	1 cut(s)	751
BspPI	GGATC	1 cut(s)	911
BspT107I	GGYRCC	2 cut(s)	227, 790
BspTNI	GGTCTC	3 cut(s)	251, 412, 1184
BsrFI	RCCGGY	1 cut(s)	467
BsrI	ACTGG	6 cut(s)	244, 352, 372, 408, 937, 1215
BssAI	RCCGGY	1 cut(s)	467
BssECI	CCNNGG	3 cut(s)	55, 56, 739
BssMI	GATC	2 cut(s)	82, 916
BssNAI	GTATAC	1 cut(s)	1090
BssNI	GRCGYC	1 cut(s)	765
BssT1I	CCWWGG	1 cut(s)	739
Bst1107I	GTATAC	1 cut(s)	1090
Bst2UI	CCWGG	2 cut(s)	57, 357
Bst4CI	ACNGT	5 cut(s)	35, 64, 694, 886, 1100
Bst6I	CTCTTC	1 cut(s)	826
BstACI	GRCGYC	1 cut(s)	765
BstC8I	GCNNGC	3 cut(s)	28, 508, 959
BstDEI	CTNAG	5 cut(s)	16, 484, 859, 864, 1127
BstF5I	GGATG	4 cut(s)	814, 855, 941, 1055
BstH2I	RGCGCY	1 cut(s)	125
BstHHI	GCGC	2 cut(s)	124, 586
BstKTI	GATC	2 cut(s)	85, 919
BstMAI	GTCTC	4 cut(s)	251, 412, 1016, 1184
BstMBI	GATC	2 cut(s)	82, 916
BstMCI	CGRYCG	1 cut(s)	74
BstMWI	GCNNNNNNNGC	4 cut(s)	119, 324, 530, 704
BstNI	CCWGG	2 cut(s)	57, 357
BstSCI	CCNGG	2 cut(s)	55, 355
BstSFI	CTRYAG	3 cut(s)	535, 747, 1096
BstV1I	GCAGC	3 cut(s)	592, 675, 733
BstZ17I	GTATAC	1 cut(s)	1090
BstZI	CGGCCG	1 cut(s)	71
BsuRI	GGCC	7 cut(s)	73, 471, 543, 561, 594, 710, 957
BtsCI	GGATG	4 cut(s)	814, 855, 941, 1055
BtsIMutI	CAGTG	2 cut(s)	237, 1105
Cac8I	GCNNGC	3 cut(s)	28, 508, 959
CaiI	CAGNNNCTG	1 cut(s)	23
CciI	TCATGA	2 cut(s)	444, 988
CfoI	GCGC	2 cut(s)	124, 586
Cfr10I	RCCGGY	1 cut(s)	467
Cfr13I	GGNCC	2 cut(s)	353, 470
CseI	GACGC	1 cut(s)	754
Csp6I	GTAC	3 cut(s)	401, 429, 882
CviAII	CATG	5 cut(s)	445, 871, 889, 989, 1222
CviQI	GTAC	3 cut(s)	401, 429, 882
DdeI	CTNAG	5 cut(s)	16, 484, 859, 864, 1127
DpnI	GATC	2 cut(s)	84, 918
DpnII	GATC	2 cut(s)	82, 916
DrdI	GACNNNNNNGTC	1 cut(s)	998
DseDI	GACNNNNNNGTC	1 cut(s)	998
EaeI	YGGCCR	1 cut(s)	71
EagI	CGGCCG	1 cut(s)	71
Eam1104I	CTCTTC	1 cut(s)	826
EarI	CTCTTC	1 cut(s)	826
Ecl136II	GAGCTC	1 cut(s)	268
EclXI	CGGCCG	1 cut(s)	71
Eco130I	CCWWGG	1 cut(s)	739
Eco147I	AGGCCT	1 cut(s)	957
Eco24I	GRGCYC	1 cut(s)	270
Eco31I	GGTCTC	3 cut(s)	251, 412, 1184
Eco47I	GGWCC	1 cut(s)	353
Eco47III	AGCGCT	1 cut(s)	123
Eco52I	CGGCCG	1 cut(s)	71
Eco53kI	GAGCTC	1 cut(s)	268
EcoICRI	GAGCTC	1 cut(s)	268
EcoRII	CCWGG	2 cut(s)	55, 355
EcoT14I	CCWWGG	1 cut(s)	739
EcoT38I	GRGCYC	1 cut(s)	270
ErhI	CCWWGG	1 cut(s)	739
FaeI	CATG	5 cut(s)	448, 874, 892, 992, 1225
FalI	AAGNNNNNCTT	4 cut(s)	609, 641, 805, 837
FaqI	GGGAC	1 cut(s)	73
FatI	CATG	5 cut(s)	444, 870, 888, 988, 1221
FauI	CCCGC	1 cut(s)	998
FauNDI	CATATG	1 cut(s)	942
FblI	GTMKAC	1 cut(s)	1089
Fnu4HI	GCNGC	7 cut(s)	71, 531, 544, 606, 664, 708, 747
FokI	GGATG	4 cut(s)	821, 862, 948, 1042
FriOI	GRGCYC	1 cut(s)	270
Fsp4HI	GCNGC	7 cut(s)	71, 531, 544, 606, 664, 708, 747
GlaI	GCGC	2 cut(s)	123, 585
GluI	GCNGC	7 cut(s)	71, 531, 544, 606, 664, 708, 747
GsuI	CTGGAG	1 cut(s)	389
HaeII	RGCGCY	1 cut(s)	125
HaeIII	GGCC	7 cut(s)	73, 471, 543, 561, 594, 710, 957
HapII	CCGG	1 cut(s)	468
HgaI	GACGC	1 cut(s)	754
HhaI	GCGC	2 cut(s)	124, 586
Hin1I	GRCGYC	1 cut(s)	765
Hin1II	CATG	5 cut(s)	448, 874, 892, 992, 1225
Hin6I	GCGC	2 cut(s)	122, 584
HinP1I	GCGC	2 cut(s)	122, 584
HincII	GTYRAC	1 cut(s)	1252
HindII	GTYRAC	1 cut(s)	1252
HinfI	GANTC	7 cut(s)	190, 275, 454, 677, 725, 979, 1009
HpaI	GTTAAC	1 cut(s)	1252
HpaII	CCGG	1 cut(s)	468
HphI	GGTGA	5 cut(s)	556, 734, 1129, 1191, 1199
Hpy166II	GTNNAC	4 cut(s)	333, 1023, 1090, 1252
Hpy188I	TCNGA	3 cut(s)	283, 867, 916
Hpy188III	TCNNGA	5 cut(s)	194, 445, 785, 976, 989
Hpy8I	GTNNAC	4 cut(s)	333, 1023, 1090, 1252
Hpy99I	CGWCG	1 cut(s)	90
HpyAV	CCTTC	6 cut(s)	424, 442, 499, 535, 804, 1204
HpyCH4III	ACNGT	5 cut(s)	35, 64, 694, 886, 1100
HpyCH4IV	ACGT	1 cut(s)	88
HpyCH4V	TGCA	7 cut(s)	237, 364, 388, 640, 749, 1103, 1207
HpyF10VI	GCNNNNNNNGC	4 cut(s)	119, 324, 530, 704
HpyF3I	CTNAG	5 cut(s)	16, 484, 859, 864, 1127
HpySE526I	ACGT	1 cut(s)	88
Hsp92I	GRCGYC	1 cut(s)	765
Hsp92II	CATG	5 cut(s)	448, 874, 892, 992, 1225
HspAI	GCGC	2 cut(s)	122, 584
KspAI	GTTAAC	1 cut(s)	1252
Kzo9I	GATC	2 cut(s)	82, 916
LmnI	GCTCC	3 cut(s)	743, 1136, 1217
Lsp1109I	GCAGC	3 cut(s)	592, 675, 733
LweI	GCATC	2 cut(s)	592, 840
MaeII	ACGT	1 cut(s)	88
MaeIII	GTNAC	1 cut(s)	815
MalI	GATC	2 cut(s)	84, 918
MboI	GATC	2 cut(s)	82, 916
MboII	GAAGA	5 cut(s)	284, 353, 409, 469, 813
MfeI	CAATTG	1 cut(s)	232
MhlI	GDGCHC	1 cut(s)	270
MluCI	AATT	5 cut(s)	76, 136, 232, 498, 672
MlyI	GAGTC	2 cut(s)	734, 1018
MmeI	TCCRAC	1 cut(s)	1216
MseI	TTAA	3 cut(s)	96, 984, 1251
MslI	CAYNNNNRTG	2 cut(s)	225, 993
MspA1I	CMGCKG	1 cut(s)	1005
MspI	CCGG	1 cut(s)	468
MspR9I	CCNGG	2 cut(s)	57, 357
MunI	CAATTG	1 cut(s)	232
MvaI	CCWGG	2 cut(s)	57, 357
MwoI	GCNNNNNNNGC	4 cut(s)	119, 324, 530, 704
NdeI	CATATG	1 cut(s)	942
NdeII	GATC	2 cut(s)	82, 916
NlaIII	CATG	5 cut(s)	448, 874, 892, 992, 1225
NlaIV	GGNNCC	3 cut(s)	229, 792, 1219
PagI	TCATGA	2 cut(s)	444, 988
PasI	CCCWGGG	1 cut(s)	56
PceI	AGGCCT	1 cut(s)	957
PfeI	GAWTC	5 cut(s)	190, 275, 454, 677, 979
PfoI	TCCNGGA	1 cut(s)	355
PkrI	GCNGC	7 cut(s)	72, 532, 545, 607, 665, 709, 748
PleI	GAGTC	2 cut(s)	733, 1017
PpsI	GAGTC	2 cut(s)	733, 1017
PsiI	TTATAA	2 cut(s)	671, 971
Psp124BI	GAGCTC	1 cut(s)	270
Psp6I	CCWGG	2 cut(s)	55, 355
PspGI	CCWGG	2 cut(s)	55, 355
PspN4I	GGNNCC	3 cut(s)	229, 792, 1219
PspPI	GGNCC	2 cut(s)	353, 470
PstI	CTGCAG	1 cut(s)	751
PstNI	CAGNNNCTG	1 cut(s)	23
RsaI	GTAC	3 cut(s)	402, 430, 883
RsaNI	GTAC	3 cut(s)	401, 429, 882
RseI	CAYNNNNRTG	2 cut(s)	225, 993
SacI	GAGCTC	1 cut(s)	270
SaqAI	TTAA	3 cut(s)	96, 984, 1251
SatI	GCNGC	7 cut(s)	71, 531, 544, 606, 664, 708, 747
Sau3AI	GATC	2 cut(s)	82, 916
Sau96I	GGNCC	2 cut(s)	353, 470
ScaI	AGTACT	1 cut(s)	402
SchI	GAGTC	2 cut(s)	734, 1018
ScrFI	CCNGG	2 cut(s)	57, 357
SduI	GDGCHC	1 cut(s)	270
SfaNI	GCATC	2 cut(s)	592, 840
SfcI	CTRYAG	3 cut(s)	535, 747, 1096
SinI	GGWCC	1 cut(s)	353
SmiMI	CAYNNNNRTG	2 cut(s)	225, 993
SmlI	CTYRAG	2 cut(s)	630, 785
SmoI	CTYRAG	2 cut(s)	630, 785
Sse9I	AATT	5 cut(s)	76, 136, 232, 498, 672
SseBI	AGGCCT	1 cut(s)	957
SsiI	CCGC	8 cut(s)	70, 243, 249, 531, 544, 567, 707, 1005
SstI	GAGCTC	1 cut(s)	270
StuI	AGGCCT	1 cut(s)	957
StyD4I	CCNGG	2 cut(s)	55, 355
StyI	CCWWGG	1 cut(s)	739
TaaI	ACNGT	5 cut(s)	35, 64, 694, 886, 1100
TaiI	ACGT	1 cut(s)	91
TaqI	TCGA	4 cut(s)	85, 270, 977, 1017
TasI	AATT	5 cut(s)	76, 136, 232, 498, 672
TatI	WGTACW	1 cut(s)	400
TauI	GCSGC	4 cut(s)	73, 533, 546, 710
TfiI	GAWTC	5 cut(s)	190, 275, 454, 677, 979
Tru1I	TTAA	3 cut(s)	96, 984, 1251
Tru9I	TTAA	3 cut(s)	96, 984, 1251
TscAI	CASTG	2 cut(s)	244, 1105
TseI	GCWGC	3 cut(s)	605, 663, 746
TspDTI	ATGAA	4 cut(s)	209, 461, 469, 813
TspGWI	ACGGA	1 cut(s)	482
TspRI	CASTG	2 cut(s)	244, 1105
VpaK11BI	GGWCC	1 cut(s)	353
XapI	RAATTY	1 cut(s)	76
XmiI	GTMKAC	1 cut(s)	1089
ZrmI	AGTACT	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.