Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8506403.1

Orthogroup ID

OG0009436

Physical Location & Seq

Genomic Coordinates Reverse (-)

1310 .. 3150

Gene Structure 1841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8506403.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

atggagttgttatcctcagtttctgcttgctaccgttgtggctgttattacgaccctgggactgtccggcggccgaatttagatcgacgtttggttaatgatatcaggaaaagaaacagttggccaaggaaagcgctatcatattctaattgcctccttatttctcaatatagtcataatcgcaaaccaccaacgcacccgaatccacataataactactacaagtccattcattttggtgccaattgcactggcagtagcggtagtgagaccaccgagctcgaagattcgtctgacatcgttgattgtgtgggaacagggcaagacgacgtagtagagtccgtggtcacagccgaagaaactggtggtcctggattggaactggaattactagaacaagtgctagaatgggcagtactggtctctcccttcttcttttggggtacggctatggtggccatgaaggggattctgccaaagacgggccctttcttcatctcagccttccgtctgattcctgctggctttctcctcgttgccttcgccgcctacagaggccggccctttccctctggcctcaccgcttggctttctattgcgcttttcggcctcgttgatgctgcttgttttcaaggatttcttgctcaaggtttgcagaggacatctgctggtcttggcagcgttataattgattcacaacctttgacagtcgctatacttgcggccttgttatttggtgagtccattggcttccttggagctgcagggcttgttcttggcgtcattggacttttacttcttgaggcaccgtcacttgcttttgatggaagtaactcttcattgtggcaaagtggggagtggtggatgcttctctcagctcagagcatggcagttggtacagtcatggtgcgttgggtttccaaatactctgatcctattatggcaactggatgggtaggctattcaactcacttgataataacttataattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

330

Amino Acids

35.74

Weight (kDa)

5.55

Isoelectric Point (pI)

39.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02690
fragaria_vesca	FvH4_5g39720 FvH4_5g39720 FvH4_5g39720 FvH4_5g39720
malus_domestica	MD09G1187600.v1.1
prunus_persica	Prupe.8G267800_v2.0.a1 Prupe.8G267800_v2.0.a1 Prupe.8G267800_v2.0.a1
pyrus_communis	pycom11g27780
rosa_chinensis	RchiOBHm_Chr7g0242021
rosa_laevigata	RLG00000000516
rosa_multiflora	Rmu_co8506403.1_g000001 Rmu_sc0003559.1_g000016 Rmu_sc0011299.1_g000014
rosa_roxburghii	Rroxscaffold_3G00218270
rosa_rugosa	Rorug07G0349800
rosa_samantha	Rh7AG504600 Rh7BG476400 Rh7CG521100 Rh7DG490200
rosa_wichuraiana	Rw7G042650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	686, 987
AccB1I	GGYRCC	2 cut(s)	239, 805
AciI	CCGC	5 cut(s)	70, 261, 546, 582, 722
AclWI	GGATC	1 cut(s)	926
AcoI	YGGCCR	3 cut(s)	71, 122, 456
AcsI	RAATTY	1 cut(s)	76
AcyI	GRCGYC	1 cut(s)	780
AfaI	GTAC	3 cut(s)	417, 445, 898
AfeI	AGCGCT	1 cut(s)	135
AfiI	CCNNNNNNNGG	2 cut(s)	465, 482
AgsI	TTSAA	2 cut(s)	632, 966
AjnI	CCWGG	2 cut(s)	55, 370
AluBI	AGCT	3 cut(s)	280, 761, 878
AluI	AGCT	3 cut(s)	280, 761, 878
Alw21I	GWGCWC	1 cut(s)	282
Alw26I	GTCTC	2 cut(s)	263, 427
AlwI	GGATC	1 cut(s)	926
AlwNI	CAGNNNCTG	1 cut(s)	23
Aor51HI	AGCGCT	1 cut(s)	135
AoxI	GGCC	9 cut(s)	71, 122, 456, 484, 556, 560, 574, 607, 723
ApaI	GGGCCC	1 cut(s)	488
ApeKI	GCWGC	3 cut(s)	620, 678, 761
ApoI	RAATTY	1 cut(s)	76
AspLEI	GCGC	2 cut(s)	136, 601
AspS9I	GGNCC	4 cut(s)	368, 484, 485, 561
AsuHPI	GGTGA	2 cut(s)	571, 749
AvaII	GGWCC	1 cut(s)	368
BaeGI	GKGCMC	1 cut(s)	488
BalI	TGGCCA	2 cut(s)	124, 458
BanI	GGYRCC	2 cut(s)	239, 805
BanII	GRGCYC	2 cut(s)	282, 488
Bbv12I	GWGCWC	1 cut(s)	282
BbvI	GCAGC	3 cut(s)	607, 690, 748
BccI	CCATC	2 cut(s)	818, 945
BceAI	ACGGC	1 cut(s)	462
BciT130I	CCWGG	2 cut(s)	57, 372
BcoDI	GTCTC	2 cut(s)	263, 427
BfaI	CTAG	2 cut(s)	392, 404
BfmI	CTRYAG	2 cut(s)	550, 762
BfoI	RGCGCY	1 cut(s)	137
BisI	GCNGC	6 cut(s)	71, 546, 621, 679, 723, 762
BlsI	GCNGC	6 cut(s)	72, 547, 622, 680, 724, 763
BmcAI	AGTACT	1 cut(s)	417
Bme1390I	CCNGG	2 cut(s)	57, 372
Bme18I	GGWCC	1 cut(s)	368
BmgT120I	GGNCC	4 cut(s)	368, 484, 485, 561
BmiI	GGNNCC	3 cut(s)	241, 486, 807
BmrFI	CCNGG	2 cut(s)	57, 372
BmsI	GCATC	2 cut(s)	607, 855
BpuEI	CTTGAG	2 cut(s)	630, 821
BsaHI	GRCGYC	1 cut(s)	780
BsaI	GGTCTC	2 cut(s)	263, 427
BsaJI	CCNNGG	5 cut(s)	55, 56, 125, 342, 754
Bsc4I	CCNNNNNNNGG	2 cut(s)	465, 482
Bse118I	RCCGGY	1 cut(s)	558
Bse1I	ACTGG	5 cut(s)	256, 367, 387, 423, 952
BseBI	CCWGG	2 cut(s)	57, 372
BseDI	CCNNGG	5 cut(s)	55, 56, 125, 342, 754
BseGI	GGATG	2 cut(s)	870, 956
BseLI	CCNNNNNNNGG	2 cut(s)	465, 482
BseMII	CTCAG	4 cut(s)	30, 513, 888, 893
BseNI	ACTGG	5 cut(s)	256, 367, 387, 423, 952
BseRI	GAGGAG	1 cut(s)	521
BseSI	GKGCMC	1 cut(s)	488
BseX3I	CGGCCG	1 cut(s)	71
BseXI	GCAGC	3 cut(s)	607, 690, 748
Bsh1285I	CGRYCG	1 cut(s)	74
BshFI	GGCC	9 cut(s)	73, 124, 458, 486, 558, 562, 576, 609, 725
BshNI	GGYRCC	2 cut(s)	239, 805
BsiEI	CGRYCG	1 cut(s)	74
BsiHKAI	GWGCWC	1 cut(s)	282
BsiSI	CCGG	2 cut(s)	67, 559
BslFI	GGGAC	1 cut(s)	73
BslI	CCNNNNNNNGG	2 cut(s)	465, 482
BsmAI	GTCTC	2 cut(s)	263, 427
BsmFI	GGGAC	1 cut(s)	73
BsnI	GGCC	9 cut(s)	73, 124, 458, 486, 558, 562, 576, 609, 725
Bso31I	GGTCTC	2 cut(s)	263, 427
Bsp120I	GGGCCC	1 cut(s)	484
Bsp1286I	GDGCHC	2 cut(s)	282, 488
Bsp143I	GATC	2 cut(s)	82, 931
BspACI	CCGC	5 cut(s)	70, 261, 546, 582, 722
BspANI	GGCC	9 cut(s)	73, 124, 458, 486, 558, 562, 576, 609, 725
BspCNI	CTCAG	4 cut(s)	29, 512, 887, 892
BspLI	GGNNCC	3 cut(s)	241, 486, 807
BspMAI	CTGCAG	1 cut(s)	766
BspPI	GGATC	1 cut(s)	926
BspT107I	GGYRCC	2 cut(s)	239, 805
BspTNI	GGTCTC	2 cut(s)	263, 427
BsrFI	RCCGGY	1 cut(s)	558
BsrI	ACTGG	5 cut(s)	256, 367, 387, 423, 952
BssAI	RCCGGY	1 cut(s)	558
BssECI	CCNNGG	5 cut(s)	55, 56, 125, 342, 754
BssMI	GATC	2 cut(s)	82, 931
BssNI	GRCGYC	1 cut(s)	780
BssT1I	CCWWGG	2 cut(s)	125, 754
Bst2UI	CCWGG	2 cut(s)	57, 372
Bst4CI	ACNGT	6 cut(s)	35, 64, 119, 709, 810, 901
Bst6I	CTCTTC	1 cut(s)	841
BstACI	GRCGYC	1 cut(s)	780
BstC8I	GCNNGC	3 cut(s)	28, 523, 560
BstDEI	CTNAG	4 cut(s)	16, 499, 874, 879
BstDSI	CCRYGG	1 cut(s)	342
BstF5I	GGATG	2 cut(s)	870, 956
BstH2I	RGCGCY	1 cut(s)	137
BstHHI	GCGC	2 cut(s)	136, 601
BstKTI	GATC	2 cut(s)	85, 934
BstMAI	GTCTC	2 cut(s)	263, 427
BstMBI	GATC	2 cut(s)	82, 931
BstMCI	CGRYCG	1 cut(s)	74
BstMWI	GCNNNNNNNGC	3 cut(s)	455, 545, 719
BstNI	CCWGG	2 cut(s)	57, 372
BstSCI	CCNGG	2 cut(s)	55, 370
BstSFI	CTRYAG	2 cut(s)	550, 762
BstSLI	GKGCMC	1 cut(s)	488
BstV1I	GCAGC	3 cut(s)	607, 690, 748
BstZI	CGGCCG	1 cut(s)	71
BsuRI	GGCC	9 cut(s)	73, 124, 458, 486, 558, 562, 576, 609, 725
BtgI	CCRYGG	1 cut(s)	342
BtsCI	GGATG	2 cut(s)	870, 956
BtsIMutI	CAGTG	1 cut(s)	249
Cac8I	GCNNGC	3 cut(s)	28, 523, 560
CaiI	CAGNNNCTG	1 cut(s)	23
CfoI	GCGC	2 cut(s)	136, 601
Cfr10I	RCCGGY	1 cut(s)	558
Cfr13I	GGNCC	4 cut(s)	368, 484, 485, 561
CseI	GACGC	1 cut(s)	769
Csp6I	GTAC	3 cut(s)	416, 444, 897
CviAII	CATG	3 cut(s)	460, 886, 904
CviQI	GTAC	3 cut(s)	416, 444, 897
DdeI	CTNAG	4 cut(s)	16, 499, 874, 879
DpnI	GATC	2 cut(s)	84, 933
DpnII	GATC	2 cut(s)	82, 931
EaeI	YGGCCR	3 cut(s)	71, 122, 456
EagI	CGGCCG	1 cut(s)	71
Eam1104I	CTCTTC	1 cut(s)	841
EarI	CTCTTC	1 cut(s)	841
Ecl136II	GAGCTC	1 cut(s)	280
EclXI	CGGCCG	1 cut(s)	71
Eco130I	CCWWGG	2 cut(s)	125, 754
Eco24I	GRGCYC	2 cut(s)	282, 488
Eco31I	GGTCTC	2 cut(s)	263, 427
Eco32I	GATATC	1 cut(s)	103
Eco47I	GGWCC	1 cut(s)	368
Eco47III	AGCGCT	1 cut(s)	135
Eco52I	CGGCCG	1 cut(s)	71
Eco53kI	GAGCTC	1 cut(s)	280
EcoICRI	GAGCTC	1 cut(s)	280
EcoO109I	RGGNCCY	1 cut(s)	485
EcoRII	CCWGG	2 cut(s)	55, 370
EcoRV	GATATC	1 cut(s)	103
EcoT14I	CCWWGG	2 cut(s)	125, 754
EcoT38I	GRGCYC	2 cut(s)	282, 488
ErhI	CCWWGG	2 cut(s)	125, 754
FaeI	CATG	3 cut(s)	463, 889, 907
FalI	AAGNNNNNCTT	4 cut(s)	624, 656, 820, 852
FaqI	GGGAC	1 cut(s)	73
FatI	CATG	3 cut(s)	459, 885, 903
Fnu4HI	GCNGC	6 cut(s)	71, 546, 621, 679, 723, 762
FokI	GGATG	2 cut(s)	877, 963
FriOI	GRGCYC	2 cut(s)	282, 488
FseI	GGCCGGCC	1 cut(s)	562
Fsp4HI	GCNGC	6 cut(s)	71, 546, 621, 679, 723, 762
FspBI	CTAG	2 cut(s)	392, 404
GlaI	GCGC	2 cut(s)	135, 600
GluI	GCNGC	6 cut(s)	71, 546, 621, 679, 723, 762
HaeII	RGCGCY	1 cut(s)	137
HaeIII	GGCC	9 cut(s)	73, 124, 458, 486, 558, 562, 576, 609, 725
HapII	CCGG	2 cut(s)	67, 559
HgaI	GACGC	1 cut(s)	769
HhaI	GCGC	2 cut(s)	136, 601
Hin1I	GRCGYC	1 cut(s)	780
Hin1II	CATG	3 cut(s)	463, 889, 907
Hin6I	GCGC	2 cut(s)	134, 599
HinP1I	GCGC	2 cut(s)	134, 599
HinfI	GANTC	7 cut(s)	202, 287, 338, 469, 514, 692, 740
HpaII	CCGG	2 cut(s)	67, 559
HphI	GGTGA	2 cut(s)	571, 749
Hpy188I	TCNGA	4 cut(s)	295, 513, 882, 931
Hpy188III	TCNNGA	2 cut(s)	106, 800
Hpy99I	CGWCG	2 cut(s)	90, 332
HpyAV	CCTTC	4 cut(s)	439, 457, 514, 550
HpyCH4III	ACNGT	6 cut(s)	35, 64, 119, 709, 810, 901
HpyCH4IV	ACGT	2 cut(s)	88, 330
HpyCH4V	TGCA	3 cut(s)	249, 655, 764
HpyF10VI	GCNNNNNNNGC	3 cut(s)	455, 545, 719
HpyF3I	CTNAG	4 cut(s)	16, 499, 874, 879
HpySE526I	ACGT	2 cut(s)	88, 330
Hsp92I	GRCGYC	1 cut(s)	780
Hsp92II	CATG	3 cut(s)	463, 889, 907
HspAI	GCGC	2 cut(s)	134, 599
KroI	GCCGGC	1 cut(s)	558
KroNI	GCCGGC	1 cut(s)	560
Kzo9I	GATC	2 cut(s)	82, 931
LmnI	GCTCC	1 cut(s)	758
Lsp1109I	GCAGC	3 cut(s)	607, 690, 748
LweI	GCATC	2 cut(s)	607, 855
MaeI	CTAG	2 cut(s)	392, 404
MaeII	ACGT	2 cut(s)	88, 330
MaeIII	GTNAC	3 cut(s)	346, 810, 830
MalI	GATC	2 cut(s)	84, 933
MboI	GATC	2 cut(s)	82, 931
MboII	GAAGA	5 cut(s)	296, 368, 424, 484, 828
MfeI	CAATTG	1 cut(s)	244
MhlI	GDGCHC	2 cut(s)	282, 488
MlsI	TGGCCA	2 cut(s)	124, 458
MluCI	AATT	6 cut(s)	76, 148, 244, 386, 687, 988
MluNI	TGGCCA	2 cut(s)	124, 458
MlyI	GAGTC	2 cut(s)	347, 749
MnlI	CCTC	9 cut(s)	25, 164, 542, 548, 580, 587, 620, 651, 796
Mox20I	TGGCCA	2 cut(s)	124, 458
MroNI	GCCGGC	1 cut(s)	558
MscI	TGGCCA	2 cut(s)	124, 458
MseI	TTAA	1 cut(s)	96
MslI	CAYNNNNRTG	1 cut(s)	237
Msp20I	TGGCCA	2 cut(s)	124, 458
MspI	CCGG	2 cut(s)	67, 559
MspR9I	CCNGG	2 cut(s)	57, 372
MunI	CAATTG	1 cut(s)	244
MvaI	CCWGG	2 cut(s)	57, 372
MwoI	GCNNNNNNNGC	3 cut(s)	455, 545, 719
NaeI	GCCGGC	1 cut(s)	560
NdeII	GATC	2 cut(s)	82, 931
NgoMIV	GCCGGC	1 cut(s)	558
NlaIII	CATG	3 cut(s)	463, 889, 907
NlaIV	GGNNCC	3 cut(s)	241, 486, 807
NmuCI	GTSAC	2 cut(s)	346, 810
PasI	CCCWGGG	1 cut(s)	56
PdiI	GCCGGC	1 cut(s)	560
PfeI	GAWTC	5 cut(s)	202, 287, 469, 514, 692
PfoI	TCCNGGA	1 cut(s)	370
PkrI	GCNGC	6 cut(s)	72, 547, 622, 680, 724, 763
PleI	GAGTC	2 cut(s)	346, 748
PpsI	GAGTC	2 cut(s)	346, 748
PsiI	TTATAA	2 cut(s)	686, 987
Psp124BI	GAGCTC	1 cut(s)	282
Psp6I	CCWGG	2 cut(s)	55, 370
PspGI	CCWGG	2 cut(s)	55, 370
PspN4I	GGNNCC	3 cut(s)	241, 486, 807
PspOMI	GGGCCC	1 cut(s)	484
PspPI	GGNCC	4 cut(s)	368, 484, 485, 561
PsrI	GAACNNNNNNTAC	2 cut(s)	372, 404
PstI	CTGCAG	1 cut(s)	766
PstNI	CAGNNNCTG	1 cut(s)	23
RigI	GGCCGGCC	1 cut(s)	562
RsaI	GTAC	3 cut(s)	417, 445, 898
RsaNI	GTAC	3 cut(s)	416, 444, 897
RseI	CAYNNNNRTG	1 cut(s)	237
SacI	GAGCTC	1 cut(s)	282
SaqAI	TTAA	1 cut(s)	96
SatI	GCNGC	6 cut(s)	71, 546, 621, 679, 723, 762
Sau3AI	GATC	2 cut(s)	82, 931
Sau96I	GGNCC	4 cut(s)	368, 484, 485, 561
ScaI	AGTACT	1 cut(s)	417
SchI	GAGTC	2 cut(s)	347, 749
ScrFI	CCNGG	2 cut(s)	57, 372
SduI	GDGCHC	2 cut(s)	282, 488
SetI	ASST	7 cut(s)	91, 282, 333, 652, 703, 763, 880
SfaNI	GCATC	2 cut(s)	607, 855
SfcI	CTRYAG	2 cut(s)	550, 762
SinI	GGWCC	1 cut(s)	368
SmiMI	CAYNNNNRTG	1 cut(s)	237
SmlI	CTYRAG	2 cut(s)	645, 800
SmoI	CTYRAG	2 cut(s)	645, 800
Sse9I	AATT	6 cut(s)	76, 148, 244, 386, 687, 988
SsiI	CCGC	5 cut(s)	70, 261, 546, 582, 722
SspMI	CTAG	2 cut(s)	392, 404
SstI	GAGCTC	1 cut(s)	282
StyD4I	CCNGG	2 cut(s)	55, 370
StyI	CCWWGG	2 cut(s)	125, 754
TaaI	ACNGT	6 cut(s)	35, 64, 119, 709, 810, 901
TaiI	ACGT	2 cut(s)	91, 333
TaqI	TCGA	2 cut(s)	85, 282
TasI	AATT	6 cut(s)	76, 148, 244, 386, 687, 988
TatI	WGTACW	1 cut(s)	415
TauI	GCSGC	3 cut(s)	73, 548, 725
TfiI	GAWTC	5 cut(s)	202, 287, 469, 514, 692
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TscAI	CASTG	1 cut(s)	256
TseFI	GTSAC	2 cut(s)	346, 810
TseI	GCWGC	3 cut(s)	620, 678, 761
Tsp45I	GTSAC	2 cut(s)	346, 810
TspDTI	ATGAA	4 cut(s)	221, 476, 484, 828
TspGWI	ACGGA	2 cut(s)	331, 497
TspRI	CASTG	1 cut(s)	256
VpaK11BI	GGWCC	1 cut(s)	368
XapI	RAATTY	1 cut(s)	76
XspI	CTAG	2 cut(s)	392, 404
ZrmI	AGTACT	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.