RLG00000000516

WAT1-related protein At3g02690

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
1399574 .. 1405085
5512 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000516

Sequence Viewer

Length: 1287 bp
ATGGGGTTGTTATCCTCGGTTTCTGCTTGCTACCGTTGTGGCTGTTATTACGACCCTGGGACTGTTCGGCGGCCGAATTTAGATCGACGTTTGGTTAATGATATCAGGAAAAGAAACAGTTGGCCAAGGAGAGCGCTATCATATTCTAATTGCCTCCTTATTTCTCAATATAATCATAATCGCAGACCACCAACGCACCCGAATCCACACAATAACTACTACAAGTCCATTCATTTTGGTGCCAATTGCACTGGCAGTAGCGGTAGTGAGACCACCGAGCTCGAAGATTCGTCTGACATCGTTGATTGTGTGGGAACAGGGCAAGACGACGTAGAGTGCGTGGTCACAGCCGAAGAAACTGGTGGTCCTGGATTGGAACTGGAATTACTAGAACAAGTGCAAGAATGGGCAGTACTGGTCTCTCCTTTCTTCTTCTGGGGTACGGCTATGGTGGCCATGAAGGGGATTCTGCCAAAGACCGGCCCTTTCTTCATCTCAGCCTTCCGTCTAATTCCTGCTGGCTTTCTCCTCGTTGCCTTCGCCGCCTACAGAGGCCGCCCCTTTCCCTCTGGCCTCACCGCTTGGCTTTCTATTGCGCTTTTTGGCCTCGTTGATGCTGCTTGTTTTCAAGGATTTCTTGCTCAAGGTTTGCAGAGGACATCTGCTGGTCTTGGCAGCGTTATAATTGATTCACAACCTTTGACAGTCGCTATACTTGCGGCCTTGTTATTTGGTGAGTCCATTGGCTTCCTTGGAGCTGCAGGGCTTGTTCTTGGCGTCATTGGACTTTTACTTCTTGAGGCACCTTCACTTGCTTTGGATGGAAGTAAATCTACATTGTGGCAAAGTGGGGAGTGGTGGATGCTTCTCTCAGCTCAGAGCATGGCAGTTGGTACAGTCATGGTGCGTTGGGTTTCCAAATACTCTGATCCTATTATGGCAACTGGATGGCATATGGTTATTGGAGGCCTGCCTCTTGTTATAATCTCGATTCTTAATCATGACAATGCTGTCAGCGGGAGTCTCGTCGAGTTCACAGCAAATGATACATTGGCACTCTTTTATACATCCATTTTTGGAAGTGCCATCAGCTATGGTGTATACTTCTACAGTGCAACAAAAGGTAGCCTGACAAAGCTCAGCTCCCTCACCTTTCTAACCCCAATGTTTGCTTCCATATTTGGGTTTCTATATCTTGGTGAGACCTTCTCACCCTTGCAACTGGGTGGAGCCATGATTACTATTGTTGGAATATACTTGGTTAACTACAAAACCATTGTTGAATGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

429

Amino Acids

46.24

Weight (kDa)

5.72

Isoelectric Point (pI)

40.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EamA PF00892 140 - 266 4.6e-23 EamA-like transporter family
EamA PF00892 283 - 422 1e-25 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 683, 983
AasI GACNNNNNNGTC 1 cut(s) 1010
AccB1I GGYRCC 2 cut(s) 239, 802
AccI GTMKAC 1 cut(s) 1101
AciI CCGC 7 cut(s) 70, 261, 543, 556, 579, 719, 1017
AclWI GGATC 1 cut(s) 923
AcoI YGGCCR 3 cut(s) 71, 122, 453
AcsI RAATTY 1 cut(s) 76
AcyI GRCGYC 1 cut(s) 777
AfaI GTAC 3 cut(s) 414, 442, 895
AfeI AGCGCT 1 cut(s) 135
AfiI CCNNNNNNNGG 3 cut(s) 462, 479, 1182
AgsI TTSAA 2 cut(s) 629, 1283
AjnI CCWGG 2 cut(s) 55, 367
AjuI GAANNNNNNNTTGG 2 cut(s) 1156, 1188
AluBI AGCT 6 cut(s) 280, 758, 875, 1092, 1138, 1143
AluI AGCT 6 cut(s) 280, 758, 875, 1092, 1138, 1143
Alw21I GWGCWC 1 cut(s) 282
Alw26I GTCTC 4 cut(s) 263, 424, 1028, 1196
AlwI GGATC 1 cut(s) 923
Aor51HI AGCGCT 1 cut(s) 135
AoxI GGCC 9 cut(s) 71, 122, 453, 481, 553, 571, 604, 720, 967
ApeKI GCWGC 3 cut(s) 617, 675, 758
ApoI RAATTY 1 cut(s) 76
AspLEI GCGC 2 cut(s) 136, 598
AspS9I GGNCC 2 cut(s) 365, 482
AsuHPI GGTGA 5 cut(s) 568, 746, 1141, 1203, 1211
AvaII GGWCC 1 cut(s) 365
BalI TGGCCA 2 cut(s) 124, 455
BanI GGYRCC 2 cut(s) 239, 802
BanII GRGCYC 1 cut(s) 282
BarI GAAGNNNNNNTAC 2 cut(s) 817, 849
Bbv12I GWGCWC 1 cut(s) 282
BbvI GCAGC 3 cut(s) 604, 687, 745
BccI CCATC 3 cut(s) 815, 942, 1094
BceAI ACGGC 1 cut(s) 459
BciT130I CCWGG 2 cut(s) 57, 369
BcoDI GTCTC 4 cut(s) 263, 424, 1028, 1196
BfaI CTAG 1 cut(s) 389
BfmI CTRYAG 3 cut(s) 547, 759, 1108
BfoI RGCGCY 1 cut(s) 137
BisI GCNGC 7 cut(s) 71, 543, 556, 618, 676, 720, 759
BlpI GCTNAGC 1 cut(s) 1139
BlsI GCNGC 7 cut(s) 72, 544, 557, 619, 677, 721, 760
BmcAI AGTACT 1 cut(s) 414
Bme1390I CCNGG 2 cut(s) 57, 369
Bme18I GGWCC 1 cut(s) 365
BmgT120I GGNCC 2 cut(s) 365, 482
BmiI GGNNCC 3 cut(s) 241, 804, 1231
BmrFI CCNGG 2 cut(s) 57, 369
BmrI ACTGGG 1 cut(s) 1232
BmsI GCATC 2 cut(s) 604, 852
BmuI ACTGGG 1 cut(s) 1232
BplI GAGNNNNNCTC 2 cut(s) 1193, 1225
Bpu1102I GCTNAGC 1 cut(s) 1139
BpuEI CTTGAG 2 cut(s) 627, 818
BsaHI GRCGYC 1 cut(s) 777
BsaI GGTCTC 3 cut(s) 263, 424, 1196
BsaJI CCNNGG 5 cut(s) 15, 55, 56, 125, 751
Bsc4I CCNNNNNNNGG 3 cut(s) 462, 479, 1182
Bse118I RCCGGY 1 cut(s) 479
Bse1I ACTGG 6 cut(s) 256, 364, 384, 420, 949, 1227
BseBI CCWGG 2 cut(s) 57, 369
BseDI CCNNGG 5 cut(s) 15, 55, 56, 125, 751
BseGI GGATG 4 cut(s) 826, 867, 953, 1067
BseLI CCNNNNNNNGG 3 cut(s) 462, 479, 1182
BseMII CTCAG 4 cut(s) 510, 885, 890, 1153
BseNI ACTGG 6 cut(s) 256, 364, 384, 420, 949, 1227
BseRI GAGGAG 1 cut(s) 518
BseX3I CGGCCG 1 cut(s) 71
BseXI GCAGC 3 cut(s) 604, 687, 745
Bsh1285I CGRYCG 1 cut(s) 74
BshFI GGCC 9 cut(s) 73, 124, 455, 483, 555, 573, 606, 722, 969
BshNI GGYRCC 2 cut(s) 239, 802
BsiEI CGRYCG 1 cut(s) 74
BsiHKAI GWGCWC 1 cut(s) 282
BsiSI CCGG 1 cut(s) 480
BslFI GGGAC 1 cut(s) 73
BslI CCNNNNNNNGG 3 cut(s) 462, 479, 1182
BsmAI GTCTC 4 cut(s) 263, 424, 1028, 1196
BsmFI GGGAC 1 cut(s) 73
BsnI GGCC 9 cut(s) 73, 124, 455, 483, 555, 573, 606, 722, 969
Bso31I GGTCTC 3 cut(s) 263, 424, 1196
Bsp1286I GDGCHC 1 cut(s) 282
Bsp143I GATC 2 cut(s) 82, 928
Bsp1720I GCTNAGC 1 cut(s) 1139
BspACI CCGC 7 cut(s) 70, 261, 543, 556, 579, 719, 1017
BspANI GGCC 9 cut(s) 73, 124, 455, 483, 555, 573, 606, 722, 969
BspCNI CTCAG 4 cut(s) 509, 884, 889, 1152
BspHI TCATGA 1 cut(s) 1000
BspLI GGNNCC 3 cut(s) 241, 804, 1231
BspMAI CTGCAG 1 cut(s) 763
BspPI GGATC 1 cut(s) 923
BspT107I GGYRCC 2 cut(s) 239, 802
BspTNI GGTCTC 3 cut(s) 263, 424, 1196
BsrFI RCCGGY 1 cut(s) 479
BsrI ACTGG 6 cut(s) 256, 364, 384, 420, 949, 1227
BssAI RCCGGY 1 cut(s) 479
BssECI CCNNGG 5 cut(s) 15, 55, 56, 125, 751
BssMI GATC 2 cut(s) 82, 928
BssNAI GTATAC 1 cut(s) 1102
BssNI GRCGYC 1 cut(s) 777
BssT1I CCWWGG 2 cut(s) 125, 751
Bst1107I GTATAC 1 cut(s) 1102
Bst2UI CCWGG 2 cut(s) 57, 369
Bst4CI ACNGT 6 cut(s) 35, 64, 119, 706, 898, 1112
BstACI GRCGYC 1 cut(s) 777
BstC8I GCNNGC 3 cut(s) 28, 520, 971
BstDEI CTNAG 4 cut(s) 496, 871, 876, 1139
BstF5I GGATG 4 cut(s) 826, 867, 953, 1067
BstH2I RGCGCY 1 cut(s) 137
BstHHI GCGC 2 cut(s) 136, 598
BstKTI GATC 2 cut(s) 85, 931
BstMAI GTCTC 4 cut(s) 263, 424, 1028, 1196
BstMBI GATC 2 cut(s) 82, 928
BstMCI CGRYCG 1 cut(s) 74
BstMWI GCNNNNNNNGC 3 cut(s) 452, 542, 716
BstNI CCWGG 2 cut(s) 57, 369
BstSCI CCNGG 2 cut(s) 55, 367
BstSFI CTRYAG 3 cut(s) 547, 759, 1108
BstV1I GCAGC 3 cut(s) 604, 687, 745
BstZ17I GTATAC 1 cut(s) 1102
BstZI CGGCCG 1 cut(s) 71
BsuRI GGCC 9 cut(s) 73, 124, 455, 483, 555, 573, 606, 722, 969
BtsCI GGATG 4 cut(s) 826, 867, 953, 1067
BtsIMutI CAGTG 2 cut(s) 249, 1117
Cac8I GCNNGC 3 cut(s) 28, 520, 971
CciI TCATGA 1 cut(s) 1000
CfoI GCGC 2 cut(s) 136, 598
Cfr10I RCCGGY 1 cut(s) 479
Cfr13I GGNCC 2 cut(s) 365, 482
CseI GACGC 1 cut(s) 766
Csp6I GTAC 3 cut(s) 413, 441, 894
CviAII CATG 5 cut(s) 457, 883, 901, 1001, 1234
CviQI GTAC 3 cut(s) 413, 441, 894
DdeI CTNAG 4 cut(s) 496, 871, 876, 1139
DpnI GATC 2 cut(s) 84, 930
DpnII GATC 2 cut(s) 82, 928
DrdI GACNNNNNNGTC 1 cut(s) 1010
DseDI GACNNNNNNGTC 1 cut(s) 1010
EaeI YGGCCR 3 cut(s) 71, 122, 453
EagI CGGCCG 1 cut(s) 71
Ecl136II GAGCTC 1 cut(s) 280
EclXI CGGCCG 1 cut(s) 71
Eco130I CCWWGG 2 cut(s) 125, 751
Eco147I AGGCCT 1 cut(s) 969
Eco24I GRGCYC 1 cut(s) 282
Eco31I GGTCTC 3 cut(s) 263, 424, 1196
Eco32I GATATC 1 cut(s) 103
Eco47I GGWCC 1 cut(s) 365
Eco47III AGCGCT 1 cut(s) 135
Eco52I CGGCCG 1 cut(s) 71
Eco53kI GAGCTC 1 cut(s) 280
EcoICRI GAGCTC 1 cut(s) 280
EcoRII CCWGG 2 cut(s) 55, 367
EcoRV GATATC 1 cut(s) 103
EcoT14I CCWWGG 2 cut(s) 125, 751
EcoT38I GRGCYC 1 cut(s) 282
ErhI CCWWGG 2 cut(s) 125, 751
FaeI CATG 5 cut(s) 460, 886, 904, 1004, 1237
FalI AAGNNNNNCTT 2 cut(s) 621, 653
FaqI GGGAC 1 cut(s) 73
FatI CATG 5 cut(s) 456, 882, 900, 1000, 1233
FauI CCCGC 1 cut(s) 1010
FauNDI CATATG 1 cut(s) 954
FblI GTMKAC 1 cut(s) 1101
Fnu4HI GCNGC 7 cut(s) 71, 543, 556, 618, 676, 720, 759
FokI GGATG 4 cut(s) 833, 874, 960, 1054
FriOI GRGCYC 1 cut(s) 282
Fsp4HI GCNGC 7 cut(s) 71, 543, 556, 618, 676, 720, 759
FspBI CTAG 1 cut(s) 389
GlaI GCGC 2 cut(s) 135, 597
GluI GCNGC 7 cut(s) 71, 543, 556, 618, 676, 720, 759
HaeII RGCGCY 1 cut(s) 137
HaeIII GGCC 9 cut(s) 73, 124, 455, 483, 555, 573, 606, 722, 969
HapII CCGG 1 cut(s) 480
HgaI GACGC 1 cut(s) 766
HhaI GCGC 2 cut(s) 136, 598
Hin1I GRCGYC 1 cut(s) 777
Hin1II CATG 5 cut(s) 460, 886, 904, 1004, 1237
Hin6I GCGC 2 cut(s) 134, 596
HinP1I GCGC 2 cut(s) 134, 596
HincII GTYRAC 1 cut(s) 1264
HindII GTYRAC 1 cut(s) 1264
HinfI GANTC 7 cut(s) 202, 287, 466, 689, 737, 991, 1021
HpaI GTTAAC 1 cut(s) 1264
HpaII CCGG 1 cut(s) 480
HphI GGTGA 5 cut(s) 568, 746, 1141, 1203, 1211
Hpy166II GTNNAC 3 cut(s) 1035, 1102, 1264
Hpy188I TCNGA 3 cut(s) 295, 879, 928
Hpy188III TCNNGA 4 cut(s) 106, 797, 988, 1001
Hpy8I GTNNAC 3 cut(s) 1035, 1102, 1264
Hpy99I CGWCG 3 cut(s) 90, 332, 1031
HpyAV CCTTC 5 cut(s) 454, 511, 547, 816, 1216
HpyCH4III ACNGT 6 cut(s) 35, 64, 119, 706, 898, 1112
HpyCH4IV ACGT 2 cut(s) 88, 330
HpyCH4V TGCA 6 cut(s) 249, 400, 652, 761, 1115, 1219
HpyF10VI GCNNNNNNNGC 3 cut(s) 452, 542, 716
HpyF3I CTNAG 4 cut(s) 496, 871, 876, 1139
HpySE526I ACGT 2 cut(s) 88, 330
Hsp92I GRCGYC 1 cut(s) 777
Hsp92II CATG 5 cut(s) 460, 886, 904, 1004, 1237
HspAI GCGC 2 cut(s) 134, 596
KspAI GTTAAC 1 cut(s) 1264
Kzo9I GATC 2 cut(s) 82, 928
LmnI GCTCC 3 cut(s) 755, 1148, 1229
Lsp1109I GCAGC 3 cut(s) 604, 687, 745
LweI GCATC 2 cut(s) 604, 852
MaeI CTAG 1 cut(s) 389
MaeII ACGT 2 cut(s) 88, 330
MaeIII GTNAC 1 cut(s) 343
MalI GATC 2 cut(s) 84, 930
MboI GATC 2 cut(s) 82, 928
MboII GAAGA 5 cut(s) 296, 365, 421, 424, 481
MfeI CAATTG 1 cut(s) 244
MhlI GDGCHC 1 cut(s) 282
MlsI TGGCCA 2 cut(s) 124, 455
MluCI AATT 6 cut(s) 76, 148, 244, 383, 510, 684
MluNI TGGCCA 2 cut(s) 124, 455
MlyI GAGTC 2 cut(s) 746, 1030
MmeI TCCRAC 1 cut(s) 1228
Mox20I TGGCCA 2 cut(s) 124, 455
MscI TGGCCA 2 cut(s) 124, 455
MseI TTAA 3 cut(s) 96, 996, 1263
MslI CAYNNNNRTG 2 cut(s) 237, 1005
Msp20I TGGCCA 2 cut(s) 124, 455
MspA1I CMGCKG 1 cut(s) 1017
MspI CCGG 1 cut(s) 480
MspR9I CCNGG 2 cut(s) 57, 369
MunI CAATTG 1 cut(s) 244
MvaI CCWGG 2 cut(s) 57, 369
MwoI GCNNNNNNNGC 3 cut(s) 452, 542, 716
NdeI CATATG 1 cut(s) 954
NdeII GATC 2 cut(s) 82, 928
NlaIII CATG 5 cut(s) 460, 886, 904, 1004, 1237
NlaIV GGNNCC 3 cut(s) 241, 804, 1231
NmuCI GTSAC 1 cut(s) 343
PagI TCATGA 1 cut(s) 1000
PasI CCCWGGG 1 cut(s) 56
PceI AGGCCT 1 cut(s) 969
PcsI WCGNNNNNNNCGW 1 cut(s) 336
PfeI GAWTC 5 cut(s) 202, 287, 466, 689, 991
PfoI TCCNGGA 1 cut(s) 367
PkrI GCNGC 7 cut(s) 72, 544, 557, 619, 677, 721, 760
PleI GAGTC 2 cut(s) 745, 1029
PpsI GAGTC 2 cut(s) 745, 1029
PsiI TTATAA 2 cut(s) 683, 983
Psp124BI GAGCTC 1 cut(s) 282
Psp6I CCWGG 2 cut(s) 55, 367
PspGI CCWGG 2 cut(s) 55, 367
PspN4I GGNNCC 3 cut(s) 241, 804, 1231
PspPI GGNCC 2 cut(s) 365, 482
PsrI GAACNNNNNNTAC 2 cut(s) 369, 401
PstI CTGCAG 1 cut(s) 763
RsaI GTAC 3 cut(s) 414, 442, 895
RsaNI GTAC 3 cut(s) 413, 441, 894
RseI CAYNNNNRTG 2 cut(s) 237, 1005
SacI GAGCTC 1 cut(s) 282
SaqAI TTAA 3 cut(s) 96, 996, 1263
SatI GCNGC 7 cut(s) 71, 543, 556, 618, 676, 720, 759
Sau3AI GATC 2 cut(s) 82, 928
Sau96I GGNCC 2 cut(s) 365, 482
ScaI AGTACT 1 cut(s) 414
SchI GAGTC 2 cut(s) 746, 1030
ScrFI CCNGG 2 cut(s) 57, 369
SduI GDGCHC 1 cut(s) 282
SfaNI GCATC 2 cut(s) 604, 852
SfcI CTRYAG 3 cut(s) 547, 759, 1108
SinI GGWCC 1 cut(s) 365
SmiMI CAYNNNNRTG 2 cut(s) 237, 1005
SmlI CTYRAG 2 cut(s) 642, 797
SmoI CTYRAG 2 cut(s) 642, 797
Sse9I AATT 6 cut(s) 76, 148, 244, 383, 510, 684
SseBI AGGCCT 1 cut(s) 969
SsiI CCGC 7 cut(s) 70, 261, 543, 556, 579, 719, 1017
SspMI CTAG 1 cut(s) 389
SstI GAGCTC 1 cut(s) 282
StuI AGGCCT 1 cut(s) 969
StyD4I CCNGG 2 cut(s) 55, 367
StyI CCWWGG 2 cut(s) 125, 751
TaaI ACNGT 6 cut(s) 35, 64, 119, 706, 898, 1112
TaiI ACGT 2 cut(s) 91, 333
TaqI TCGA 4 cut(s) 85, 282, 989, 1029
TasI AATT 6 cut(s) 76, 148, 244, 383, 510, 684
TatI WGTACW 1 cut(s) 412
TauI GCSGC 4 cut(s) 73, 545, 558, 722
TfiI GAWTC 5 cut(s) 202, 287, 466, 689, 991
Tru1I TTAA 3 cut(s) 96, 996, 1263
Tru9I TTAA 3 cut(s) 96, 996, 1263
TscAI CASTG 2 cut(s) 256, 1117
TseFI GTSAC 1 cut(s) 343
TseI GCWGC 3 cut(s) 617, 675, 758
Tsp45I GTSAC 1 cut(s) 343
TspDTI ATGAA 3 cut(s) 221, 473, 481
TspGWI ACGGA 1 cut(s) 494
TspRI CASTG 2 cut(s) 256, 1117
VpaK11BI GGWCC 1 cut(s) 365
XapI RAATTY 1 cut(s) 76
XmiI GTMKAC 1 cut(s) 1101
XspI CTAG 1 cut(s) 389
ZrmI AGTACT 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.