Prupe.7G058700_v2.0.a1

Serine arginine repetitive matrix protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0012049
Physical Location & Seq
Forward (+)
9803745 .. 9805718
1974 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G058700.1

Sequence Viewer

Length: 1461 bp
ATGGGTACTTGTTTTAGCAAGAAGAAGAGGAGCTCCTCTCCTCTTCCTCTTCCTCTTCCTCCTCCTGCTGCTACTGGTTATGGCTATGTAGTGGGTGAAGATCCAAATGATAACAAGAACAAGCCCAAATCGGTTTCGGTAGTAGCAGAGCCAGGTCTGGTTGAGATGAAGGCGAAGAAGCCAGAACGAAAACAAGAACAAATTGAAGAAGAAAAAGAAGATCAAGAAACCCAAGTCCAAGTGAAGAAGGAGGTATTCATCATCAAACACCGCAAGAGCCACGACGGTAGAGGAGACAGAGATTGCGGAAAAAGCCCACTTCCCCAAAATCAAATCCAACAACAACCATCAGTATCAGATGGGGGGGCTGATGTTGCTGCTGCCTCTGCTTCTCCTCCTACACCTCAGATTGCAAATAGTACCACCAAGACTGGCACTTGCAATGAATTGGTGGATGACGTTGACAAGGTTGTGAAGCGGGTGAGGACACAGAGCTGCAACAAAGAAGAACTGGACGCCATTCTTCTACAGTGTGGAAGGCTCAGCCGCAGCAACTCTTCTGGGCACAATCGAAGGTATTCTGGTTCGAAGAGGAGCTATGACTTTGATGCTGTAGATGGTCATGTCAATGTCAATGAAATTTGTCACGAGGATGCTGATGCTGATGGGATGTCTGCGGCGGACAAAATCCATCGCCACCGCCAGTCCTCGAGGTCAAGGCCTTCTTCTCCTTCTTCTCAAGGGAGGAGGAGGAGGAGAACTCCAAGCAGAGAAAGAAACCAGCAGCAGCAGCAGCAGCGATCCAGCAGCAGAGAGAGACGAACTAGTCGATCCCCGAGCAAGCGCTCATCTTCCCAACAAAACCCCTCTGCTTCTTCTTCTTCTAATGCTAATGCCAATGCCAATGGGAATAACAGGCCAGGAAAGATGGTTTCGGTCCCTGCCGCCGCCATTTCTTCCGTGGCGACGATGGAGAAGACAACCCACATTAACAATGGAGAATCTGCAGCTACCATCAAGCGGGTTTCGGTGAAGAGAAATGTTGGATCTCCCCGTGCTCAATCTCCTGCTAGAGCAAATGCTAGAGGGGCTCCCAATGAGGGTCAGCAGCAGCAACAACAACCTTCACTTAGCCGCAGCTCTTCAAGAAAAGCAGAGCAATCGCCCTACAGAAGGAACCCATTGGCTGAGATTGATCCTAACTCCCTTGCCTATCAACAAGCGCATACCAACAACAGAACCAAAAGGGAAATCCAGAATGAAGAGGACATTCCTGTCAAGGAACCCACCAATCTAATGAATCCGGCGCCAATGCAAAAACCGAATCTCGAAATTAACAATAACAGAACTGTTCCCCATGGTGTTAACTACATAACCAGCGGCACAAGTACAATGGACAGCAGCAGAATGTTCCAGCGGAAGAGGCTAAGGGACAGCCACAAGGGAAACCCCAAACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

487

Amino Acids

53.58

Weight (kDa)

10.06

Isoelectric Point (pI)

80.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012049)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65710 AT5G37010
fragaria_vesca FvH4_5g39710
malus_domestica MD12G1074700.v1.1 MD14G1072800.v1.1
prunus_persica Prupe.7G058700_v2.0.a1 Prupe.7G058800_v2.0.a1
pyrus_communis pycom12g06450 pycom14g06270
rosa_chinensis RchiOBHm_Chr7g0242011
rosa_laevigata RLG00000000517
rosa_multiflora Rmu_sc0003559.1_g000015
rosa_roxburghii Rroxscaffold_3G00218280
rosa_rugosa Rorug07G0349800
rosa_samantha Rh7AG504500 Rh7BG476300 Rh7CG521000 Rh7DG490100
rosa_wichuraiana Rw7G042640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 825, 1274
AbsI CCTCGAGG 1 cut(s) 709
AccB1I GGYRCC 1 cut(s) 1306
AclWI GGATC 5 cut(s) 95, 795, 825, 1054, 1190
AcsI RAATTY 1 cut(s) 639
AcyI GRCGYC 2 cut(s) 516, 1307
AfaI GTAC 3 cut(s) 7, 421, 1390
AfeI AGCGCT 1 cut(s) 845
AfiI CCNNNNNNNGG 3 cut(s) 1020, 1100, 1173
AgsI TTSAA 2 cut(s) 206, 1146
AhlI ACTAGT 1 cut(s) 824
AjnI CCWGG 2 cut(s) 151, 919
AluBI AGCT 5 cut(s) 33, 495, 597, 1010, 1140
AluI AGCT 5 cut(s) 33, 495, 597, 1010, 1140
Alw21I GWGCWC 2 cut(s) 35, 1060
Alw26I GTCTC 2 cut(s) 288, 811
AlwI GGATC 5 cut(s) 95, 795, 825, 1054, 1190
Ama87I CYCGRG 2 cut(s) 709, 835
Aor51HI AGCGCT 1 cut(s) 845
AoxI GGCC 2 cut(s) 719, 917
ApoI RAATTY 1 cut(s) 639
Asp700I GAANNNNTTC 1 cut(s) 577
AspLEI GCGC 3 cut(s) 846, 1225, 1309
AspS9I GGNCC 1 cut(s) 937
AsuHPI GGTGA 3 cut(s) 107, 493, 1042
AsuII TTCGAA 1 cut(s) 587
AvaI CYCGRG 2 cut(s) 709, 835
AvaII GGWCC 1 cut(s) 937
BaeGI GKGCMC 1 cut(s) 567
BanI GGYRCC 1 cut(s) 1306
BanII GRGCYC 2 cut(s) 35, 1093
BauI CACGAG 1 cut(s) 647
BbsI GAAGAC 1 cut(s) 983
Bbv12I GWGCWC 2 cut(s) 35, 1060
BccI CCATC 8 cut(s) 353, 355, 611, 659, 699, 922, 964, 1022
BcgI CGANNNNNNTGC 2 cut(s) 1143, 1177
BciT130I CCWGG 2 cut(s) 153, 921
BcoDI GTCTC 2 cut(s) 288, 811
BcuI ACTAGT 1 cut(s) 824
BfaI CTAG 3 cut(s) 825, 1071, 1083
BfmI CTRYAG 4 cut(s) 527, 612, 1005, 1168
BfoI RGCGCY 2 cut(s) 847, 1310
BlpI GCTNAGC 1 cut(s) 542
Bme1390I CCNGG 2 cut(s) 153, 921
Bme18I GGWCC 1 cut(s) 937
BmeT110I CYCGRG 2 cut(s) 709, 835
BmgT120I GGNCC 1 cut(s) 937
BmiI GGNNCC 5 cut(s) 939, 1092, 1178, 1284, 1308
BmrFI CCNGG 2 cut(s) 153, 921
BmsI GCATC 3 cut(s) 598, 643, 649
BpiI GAAGAC 1 cut(s) 983
BplI GAGNNNNNCTC 4 cut(s) 22, 54, 745, 777
Bpu10I CCTNAGC 1 cut(s) 1427
Bpu1102I GCTNAGC 1 cut(s) 542
Bpu14I TTCGAA 1 cut(s) 587
BpuEI CTTGAG 1 cut(s) 723
BsaHI GRCGYC 2 cut(s) 516, 1307
BsaJI CCNNGG 2 cut(s) 960, 1357
Bsc4I CCNNNNNNNGG 3 cut(s) 1020, 1100, 1173
Bse1I ACTGG 4 cut(s) 79, 436, 516, 703
Bse3DI GCAATG 1 cut(s) 448
BseBI CCWGG 2 cut(s) 153, 921
BseDI CCNNGG 2 cut(s) 960, 1357
BseGI GGATG 3 cut(s) 460, 658, 675
BseLI CCNNNNNNNGG 3 cut(s) 1020, 1100, 1173
BseMI GCAATG 1 cut(s) 448
BseMII CTCAG 3 cut(s) 419, 556, 1179
BseNI ACTGG 4 cut(s) 79, 436, 516, 703
BseSI GKGCMC 1 cut(s) 567
BshFI GGCC 2 cut(s) 721, 919
BshNI GGYRCC 1 cut(s) 1306
BsiHKAI GWGCWC 2 cut(s) 35, 1060
BsiHKCI CYCGRG 2 cut(s) 709, 835
BsiSI CCGG 1 cut(s) 1304
BslFI GGGAC 2 cut(s) 923, 1445
BslI CCNNNNNNNGG 3 cut(s) 1020, 1100, 1173
BsmAI GTCTC 2 cut(s) 288, 811
BsmBI CGTCTC 1 cut(s) 811
BsmFI GGGAC 2 cut(s) 923, 1445
BsnI GGCC 2 cut(s) 721, 919
BsoBI CYCGRG 2 cut(s) 709, 835
Bsp119I TTCGAA 1 cut(s) 587
Bsp1286I GDGCHC 4 cut(s) 35, 567, 1060, 1093
Bsp143I GATC 6 cut(s) 100, 220, 800, 830, 1046, 1195
Bsp1720I GCTNAGC 1 cut(s) 542
Bsp19I CCATGG 1 cut(s) 1357
BspANI GGCC 2 cut(s) 721, 919
BspCNI CTCAG 3 cut(s) 418, 555, 1180
BspLI GGNNCC 5 cut(s) 939, 1092, 1178, 1284, 1308
BspMAI CTGCAG 1 cut(s) 1009
BspPI GGATC 5 cut(s) 95, 795, 825, 1054, 1190
BspQI GCTCTTC 1 cut(s) 1147
BspT104I TTCGAA 1 cut(s) 587
BspT107I GGYRCC 1 cut(s) 1306
BsrDI GCAATG 1 cut(s) 448
BsrI ACTGG 4 cut(s) 79, 436, 516, 703
BssECI CCNNGG 2 cut(s) 960, 1357
BssMI GATC 6 cut(s) 100, 220, 800, 830, 1046, 1195
BssNI GRCGYC 2 cut(s) 516, 1307
BssSI CACGAG 1 cut(s) 647
BssT1I CCWWGG 1 cut(s) 1357
Bst2BI CACGAG 1 cut(s) 647
Bst2UI CCWGG 2 cut(s) 153, 921
Bst4CI ACNGT 3 cut(s) 287, 531, 1351
BstACI GRCGYC 2 cut(s) 516, 1307
BstBI TTCGAA 1 cut(s) 587
BstC8I GCNNGC 1 cut(s) 842
BstDEI CTNAG 5 cut(s) 405, 542, 1130, 1188, 1427
BstDSI CCRYGG 2 cut(s) 960, 1357
BstENI CCTNNNNNAGG 1 cut(s) 1171
BstF5I GGATG 3 cut(s) 460, 658, 675
BstH2I RGCGCY 2 cut(s) 847, 1310
BstHHI GCGC 3 cut(s) 846, 1225, 1309
BstKTI GATC 6 cut(s) 103, 223, 803, 833, 1049, 1198
BstMAI GTCTC 2 cut(s) 288, 811
BstMBI GATC 6 cut(s) 100, 220, 800, 830, 1046, 1195
BstMWI GCNNNNNNNGC 8 cut(s) 312, 374, 386, 790, 793, 796, 1088, 1423
BstNI CCWGG 2 cut(s) 153, 921
BstSCI CCNGG 2 cut(s) 151, 919
BstSFI CTRYAG 4 cut(s) 527, 612, 1005, 1168
BstSLI GKGCMC 1 cut(s) 567
BstV2I GAAGAC 1 cut(s) 983
BstX2I RGATCY 2 cut(s) 100, 1046
BstYI RGATCY 2 cut(s) 100, 1046
BsuRI GGCC 2 cut(s) 721, 919
BtgI CCRYGG 2 cut(s) 960, 1357
BtgZI GCGATG 1 cut(s) 677
BtsCI GGATG 3 cut(s) 460, 658, 675
BtsIMutI CAGTG 1 cut(s) 536
Cac8I GCNNGC 1 cut(s) 842
CfoI GCGC 3 cut(s) 846, 1225, 1309
Cfr13I GGNCC 1 cut(s) 937
CseI GACGC 1 cut(s) 524
Csp6I GTAC 3 cut(s) 6, 420, 1389
CviAII CATG 2 cut(s) 623, 1358
CviQI GTAC 3 cut(s) 6, 420, 1389
DdeI CTNAG 5 cut(s) 405, 542, 1130, 1188, 1427
DinI GGCGCC 1 cut(s) 1308
DpnI GATC 6 cut(s) 102, 222, 802, 832, 1048, 1197
DpnII GATC 6 cut(s) 100, 220, 800, 830, 1046, 1195
DrdI GACNNNNNNGTC 2 cut(s) 825, 1274
DseDI GACNNNNNNGTC 2 cut(s) 825, 1274
EciI GGCGGA 1 cut(s) 695
Ecl136II GAGCTC 1 cut(s) 33
Eco130I CCWWGG 1 cut(s) 1357
Eco147I AGGCCT 1 cut(s) 721
Eco24I GRGCYC 2 cut(s) 35, 1093
Eco47I GGWCC 1 cut(s) 937
Eco47III AGCGCT 1 cut(s) 845
Eco53kI GAGCTC 1 cut(s) 33
Eco88I CYCGRG 2 cut(s) 709, 835
EcoICRI GAGCTC 1 cut(s) 33
EcoNI CCTNNNNNAGG 1 cut(s) 1171
EcoRII CCWGG 2 cut(s) 151, 919
EcoT14I CCWWGG 1 cut(s) 1357
EcoT38I GRGCYC 2 cut(s) 35, 1093
EgeI GGCGCC 1 cut(s) 1308
EheI GGCGCC 1 cut(s) 1308
ErhI CCWWGG 1 cut(s) 1357
Esp3I CGTCTC 1 cut(s) 811
FaeI CATG 2 cut(s) 626, 1361
FaiI YATR 7 cut(s) 81, 87, 600, 624, 1227, 1359, 1373
FalI AAGNNNNNCTT 2 cut(s) 709, 741
FaqI GGGAC 2 cut(s) 923, 1445
FatI CATG 2 cut(s) 622, 1357
FauI CCCGC 2 cut(s) 471, 1014
FokI GGATG 3 cut(s) 467, 665, 682
FriOI GRGCYC 2 cut(s) 35, 1093
FspBI CTAG 3 cut(s) 825, 1071, 1083
GlaI GCGC 3 cut(s) 845, 1224, 1308
HaeII RGCGCY 2 cut(s) 847, 1310
HaeIII GGCC 2 cut(s) 721, 919
HapII CCGG 1 cut(s) 1304
HgaI GACGC 1 cut(s) 524
HhaI GCGC 3 cut(s) 846, 1225, 1309
Hin1I GRCGYC 2 cut(s) 516, 1307
Hin1II CATG 2 cut(s) 626, 1361
Hin6I GCGC 3 cut(s) 844, 1223, 1307
HinP1I GCGC 3 cut(s) 844, 1223, 1307
HincII GTYRAC 2 cut(s) 463, 1366
HindII GTYRAC 2 cut(s) 463, 1366
HinfI GANTC 3 cut(s) 1001, 1300, 1324
HpaI GTTAAC 1 cut(s) 1366
HpaII CCGG 1 cut(s) 1304
HphI GGTGA 3 cut(s) 107, 493, 1042
Hpy166II GTNNAC 2 cut(s) 463, 1366
Hpy188I TCNGA 2 cut(s) 358, 408
Hpy188III TCNNGA 5 cut(s) 224, 647, 1146, 1255, 1328
Hpy8I GTNNAC 2 cut(s) 463, 1366
Hpy99I CGWCG 2 cut(s) 287, 970
HpyAV CCTTC 8 cut(s) 163, 241, 531, 567, 732, 741, 1134, 1167
HpyCH4III ACNGT 3 cut(s) 287, 531, 1351
HpyCH4IV ACGT 1 cut(s) 459
HpyCH4V TGCA 5 cut(s) 413, 441, 498, 1007, 1315
HpyF10VI GCNNNNNNNGC 8 cut(s) 312, 374, 386, 790, 793, 796, 1088, 1423
HpyF3I CTNAG 5 cut(s) 405, 542, 1130, 1188, 1427
HpySE526I ACGT 1 cut(s) 459
Hsp92I GRCGYC 2 cut(s) 516, 1307
Hsp92II CATG 2 cut(s) 626, 1361
HspAI GCGC 3 cut(s) 844, 1223, 1307
KasI GGCGCC 1 cut(s) 1306
KspAI GTTAAC 1 cut(s) 1366
Kzo9I GATC 6 cut(s) 100, 220, 800, 830, 1046, 1195
LguI GCTCTTC 1 cut(s) 1147
LmnI GCTCC 4 cut(s) 30, 38, 594, 1096
LweI GCATC 3 cut(s) 598, 643, 649
MaeI CTAG 3 cut(s) 825, 1071, 1083
MaeII ACGT 1 cut(s) 459
MaeIII GTNAC 1 cut(s) 644
MalI GATC 6 cut(s) 102, 222, 802, 832, 1048, 1197
MboI GATC 6 cut(s) 100, 220, 800, 830, 1046, 1195
MflI RGATCY 2 cut(s) 100, 1046
MhlI GDGCHC 4 cut(s) 35, 567, 1060, 1093
MluCI AATT 4 cut(s) 201, 446, 639, 1332
Mly113I GGCGCC 1 cut(s) 1307
MmeI TCCRAC 2 cut(s) 361, 1024
MroXI GAANNNNTTC 1 cut(s) 577
MseI TTAA 4 cut(s) 990, 1335, 1365, 1459
MslI CAYNNNNRTG 2 cut(s) 627, 651
MspA1I CMGCKG 2 cut(s) 1380, 1417
MspI CCGG 1 cut(s) 1304
MspR9I CCNGG 2 cut(s) 153, 921
MvaI CCWGG 2 cut(s) 153, 921
MwoI GCNNNNNNNGC 8 cut(s) 312, 374, 386, 790, 793, 796, 1088, 1423
NarI GGCGCC 1 cut(s) 1307
NcoI CCATGG 1 cut(s) 1357
NdeII GATC 6 cut(s) 100, 220, 800, 830, 1046, 1195
NlaIII CATG 2 cut(s) 626, 1361
NlaIV GGNNCC 5 cut(s) 939, 1092, 1178, 1284, 1308
NmuCI GTSAC 1 cut(s) 644
NspV TTCGAA 1 cut(s) 587
PaeR7I CTCGAG 1 cut(s) 709
PceI AGGCCT 1 cut(s) 721
PciSI GCTCTTC 1 cut(s) 1147
PcsI WCGNNNNNNNCGW 1 cut(s) 826
PdmI GAANNNNTTC 1 cut(s) 577
PfeI GAWTC 3 cut(s) 1001, 1300, 1324
PluTI GGCGCC 1 cut(s) 1310
Psp124BI GAGCTC 1 cut(s) 35
Psp6I CCWGG 2 cut(s) 151, 919
PspGI CCWGG 2 cut(s) 151, 919
PspN4I GGNNCC 5 cut(s) 939, 1092, 1178, 1284, 1308
PspPI GGNCC 1 cut(s) 937
PspXI VCTCGAGB 1 cut(s) 709
PstI CTGCAG 1 cut(s) 1009
PsuI RGATCY 2 cut(s) 100, 1046
RsaI GTAC 3 cut(s) 7, 421, 1390
RsaNI GTAC 3 cut(s) 6, 420, 1389
RseI CAYNNNNRTG 2 cut(s) 627, 651
SacI GAGCTC 1 cut(s) 35
SapI GCTCTTC 1 cut(s) 1147
SaqAI TTAA 4 cut(s) 990, 1335, 1365, 1459
Sau3AI GATC 6 cut(s) 100, 220, 800, 830, 1046, 1195
Sau96I GGNCC 1 cut(s) 937
ScrFI CCNGG 2 cut(s) 153, 921
SduI GDGCHC 4 cut(s) 35, 567, 1060, 1093
SfaNI GCATC 3 cut(s) 598, 643, 649
SfcI CTRYAG 4 cut(s) 527, 612, 1005, 1168
SfoI GGCGCC 1 cut(s) 1308
Sfr274I CTCGAG 1 cut(s) 709
SfuI TTCGAA 1 cut(s) 587
SinI GGWCC 1 cut(s) 937
SlaI CTCGAG 1 cut(s) 709
SmiMI CAYNNNNRTG 2 cut(s) 627, 651
SmlI CTYRAG 2 cut(s) 709, 738
SmoI CTYRAG 2 cut(s) 709, 738
SpeI ACTAGT 1 cut(s) 824
Sse9I AATT 4 cut(s) 201, 446, 639, 1332
SseBI AGGCCT 1 cut(s) 721
SspDI GGCGCC 1 cut(s) 1306
SspMI CTAG 3 cut(s) 825, 1071, 1083
SstI GAGCTC 1 cut(s) 35
StuI AGGCCT 1 cut(s) 721
StyD4I CCNGG 2 cut(s) 151, 919
StyI CCWWGG 1 cut(s) 1357
TaaI ACNGT 3 cut(s) 287, 531, 1351
TaiI ACGT 1 cut(s) 462
TaqI TCGA 5 cut(s) 571, 587, 710, 829, 1329
TaqII GACCGA 1 cut(s) 925
TasI AATT 4 cut(s) 201, 446, 639, 1332
TatI WGTACW 1 cut(s) 1388
TauI GCSGC 6 cut(s) 549, 680, 947, 950, 1137, 1383
TfiI GAWTC 3 cut(s) 1001, 1300, 1324
Tru1I TTAA 4 cut(s) 990, 1335, 1365, 1459
Tru9I TTAA 4 cut(s) 990, 1335, 1365, 1459
TscAI CASTG 1 cut(s) 536
TseFI GTSAC 1 cut(s) 644
Tsp45I GTSAC 1 cut(s) 644
TspDTI ATGAA 6 cut(s) 182, 247, 459, 651, 1275, 1313
TspGWI ACGGA 1 cut(s) 949
TspRI CASTG 1 cut(s) 536
VpaK11BI GGWCC 1 cut(s) 937
XagI CCTNNNNNAGG 1 cut(s) 1171
XapI RAATTY 1 cut(s) 639
XcmI CCANNNNNNNNNTGG 2 cut(s) 958, 992
XhoI CTCGAG 1 cut(s) 709
XmnI GAANNNNTTC 1 cut(s) 577
XspI CTAG 3 cut(s) 825, 1071, 1083
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.