AT1G67540

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013386
Physical Location & Seq
Reverse (-)
25311242 .. 25312482
1241 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G67540.1

Sequence Viewer

Length: 699 bp
ATGACTCGTGTTCTTTACACAAGAAGCCAGACTCTGATGAAGAAGAAGAAGAATCTATCCTCTTGGCTATTGAGGAAACTCTTTGAATTCGTTATCTTCTTTGTTTCGATGACAAGTCCGTTTCATCGTCATTTTCTCGCGGTTCTCTCTGTAGCTGACGATCATATACTCGCGTTACAAGACGCAATCGAGACTTACTTCCCTTCTTCAAGCAATGTGTTTGTTAAGATCTTTGATTTGTTGATCATTGTAGAGACTCTGCCAGAGAAACTTGATGGAGTGCTCAAGAAACTTCCGAGTTTGATGAGCCGAGTGGCGTGGCTAGATTGGTTGTTGGTTCATGTTATTTCTAGGCTTGGTTTGTTGGTGAACGTGTTGGGACGTTGGAGAGATAAGAACAAAGGGACGAATGAGAAAGAGATCACAGTTGATAGGAGCTTTAGCAGATCAGGGTCAGTTTCAGAAGAGGAGGAAGAGAAGAGGAATTTGGGGACGGAGAAGAAAGTGTCGTACAAGGAGGCATTACAGAGAGGAAGTAGTGGAGAAGATGGCGGTGGAAGCACTGGTCGAAGCAGCAGTAGCCGCAGAGATCCGATCTTGGAACTCTTTGAGACCGGATGGATTCAGAATCCCATCAAACGAAGTAGTAGAAGCGCGGATTCGCTCACCTTCTCGCGTTCTGAATCCTATTCGACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

232

Amino Acids

26.42

Weight (kDa)

9.6

Isoelectric Point (pI)

71.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013386)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67540 AT1G67540
fragaria_vesca FvH4_4g24090
malus_domestica MD13G1115600.v1.1 MD16G1115600.v1.1
prunus_persica Prupe.1G231500_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0430861
rosa_laevigata RLG00000006945
rosa_multiflora Rmu_sc0002620.1_g000003 Rmu_sc0006263.1_g000006
rosa_roxburghii Rroxscaffold_5G00372530
rosa_rugosa Rorug04G0246000.1
rosa_samantha Rh4AG302300 Rh4BG310400 Rh4CG326700 Rh4CG326800 Rh4DG306500
rosa_wichuraiana Rw4G026270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 140, 173, 656, 676
AciI CCGC 4 cut(s) 140, 552, 583, 656
AclWI GGATC 1 cut(s) 584
AcsI RAATTY 2 cut(s) 86, 484
AfaI GTAC 1 cut(s) 512
AflIII ACRYGT 1 cut(s) 372
AgsI TTSAA 2 cut(s) 86, 210
AjuI GAANNNNNNNTTGG 2 cut(s) 470, 502
AluBI AGCT 2 cut(s) 155, 438
AluI AGCT 2 cut(s) 155, 438
Alw21I GWGCWC 1 cut(s) 285
Alw26I GTCTC 3 cut(s) 185, 248, 605
AlwI GGATC 1 cut(s) 584
AlwNI CAGNNNCTG 1 cut(s) 34
ApeKI GCWGC 1 cut(s) 573
ApoI RAATTY 2 cut(s) 86, 484
AspLEI GCGC 1 cut(s) 656
AsuHPI GGTGA 2 cut(s) 379, 658
BauI CACGAG 1 cut(s) 6
Bbv12I GWGCWC 1 cut(s) 285
BbvI GCAGC 1 cut(s) 585
BccI CCATC 4 cut(s) 269, 542, 612, 641
BclI TGATCA 1 cut(s) 243
BcoDI GTCTC 3 cut(s) 185, 248, 605
BfaI CTAG 2 cut(s) 323, 351
BfmI CTRYAG 1 cut(s) 150
BglII AGATCT 1 cut(s) 228
BisI GCNGC 2 cut(s) 574, 583
BlsI GCNGC 2 cut(s) 575, 584
BpuEI CTTGAG 1 cut(s) 269
BsaI GGTCTC 1 cut(s) 605
BsaWI WCCGGW 1 cut(s) 614
Bse1I ACTGG 1 cut(s) 568
Bse3DI GCAATG 1 cut(s) 220
BseGI GGATG 1 cut(s) 623
BseMI GCAATG 1 cut(s) 220
BseNI ACTGG 1 cut(s) 568
BseRI GAGGAG 1 cut(s) 482
BseXI GCAGC 1 cut(s) 585
Bsh1236I CGCG 4 cut(s) 140, 173, 656, 676
BsiHKAI GWGCWC 1 cut(s) 285
BsiSI CCGG 1 cut(s) 615
BslFI GGGAC 3 cut(s) 393, 418, 505
BsmAI GTCTC 3 cut(s) 185, 248, 605
BsmFI GGGAC 3 cut(s) 393, 418, 505
Bso31I GGTCTC 1 cut(s) 605
Bsp1286I GDGCHC 1 cut(s) 285
Bsp143I GATC 7 cut(s) 160, 228, 243, 420, 446, 589, 594
BspACI CCGC 4 cut(s) 140, 552, 583, 656
BspFNI CGCG 4 cut(s) 140, 173, 656, 676
BspPI GGATC 1 cut(s) 584
BspTNI GGTCTC 1 cut(s) 605
BsrDI GCAATG 1 cut(s) 220
BsrI ACTGG 1 cut(s) 568
BssMI GATC 7 cut(s) 160, 228, 243, 420, 446, 589, 594
BssSI CACGAG 1 cut(s) 6
Bst2BI CACGAG 1 cut(s) 6
Bst4CI ACNGT 1 cut(s) 427
Bst6I CTCTTC 3 cut(s) 459, 468, 473
BstF5I GGATG 1 cut(s) 623
BstFNI CGCG 4 cut(s) 140, 173, 656, 676
BstHHI GCGC 1 cut(s) 656
BstKTI GATC 7 cut(s) 163, 231, 246, 423, 449, 592, 597
BstMAI GTCTC 3 cut(s) 185, 248, 605
BstMBI GATC 7 cut(s) 160, 228, 243, 420, 446, 589, 594
BstMWI GCNNNNNNNGC 3 cut(s) 558, 579, 582
BstSFI CTRYAG 1 cut(s) 150
BstUI CGCG 4 cut(s) 140, 173, 656, 676
BstV1I GCAGC 1 cut(s) 585
BstX2I RGATCY 2 cut(s) 228, 589
BstYI RGATCY 2 cut(s) 228, 589
BtsCI GGATG 1 cut(s) 623
BtsIMutI CAGTG 1 cut(s) 561
CaiI CAGNNNCTG 1 cut(s) 34
CfoI GCGC 1 cut(s) 656
CseI GACGC 1 cut(s) 191
Csp6I GTAC 1 cut(s) 511
CviAII CATG 1 cut(s) 341
CviJI RGCY 8 cut(s) 27, 67, 155, 309, 322, 355, 438, 582
CviKI_1 RGCY 8 cut(s) 27, 67, 155, 309, 322, 355, 438, 582
CviQI GTAC 1 cut(s) 511
DpnI GATC 7 cut(s) 162, 230, 245, 422, 448, 591, 596
DpnII GATC 7 cut(s) 160, 228, 243, 420, 446, 589, 594
Eam1104I CTCTTC 3 cut(s) 459, 468, 473
EarI CTCTTC 3 cut(s) 459, 468, 473
Eco31I GGTCTC 1 cut(s) 605
EcoRI GAATTC 1 cut(s) 86
FaeI CATG 1 cut(s) 344
FaiI YATR 3 cut(s) 165, 167, 342
FaqI GGGAC 3 cut(s) 393, 418, 505
FatI CATG 1 cut(s) 340
FbaI TGATCA 1 cut(s) 243
Fnu4HI GCNGC 2 cut(s) 574, 583
FokI GGATG 1 cut(s) 630
Fsp4HI GCNGC 2 cut(s) 574, 583
FspBI CTAG 2 cut(s) 323, 351
GlaI GCGC 1 cut(s) 655
GluI GCNGC 2 cut(s) 574, 583
HapII CCGG 1 cut(s) 615
HgaI GACGC 1 cut(s) 191
HhaI GCGC 1 cut(s) 656
Hin1II CATG 1 cut(s) 344
Hin6I GCGC 1 cut(s) 654
HinP1I GCGC 1 cut(s) 654
HinfI GANTC 8 cut(s) 4, 31, 52, 256, 622, 628, 659, 683
HpaII CCGG 1 cut(s) 615
HphI GGTGA 2 cut(s) 379, 658
Hpy166II GTNNAC 1 cut(s) 370
Hpy188I TCNGA 6 cut(s) 36, 297, 463, 594, 627, 682
Hpy188III TCNNGA 2 cut(s) 190, 286
Hpy8I GTNNAC 1 cut(s) 370
HpyAV CCTTC 2 cut(s) 213, 679
HpyCH4III ACNGT 1 cut(s) 427
HpyCH4IV ACGT 2 cut(s) 372, 382
HpyF10VI GCNNNNNNNGC 3 cut(s) 558, 579, 582
HpySE526I ACGT 2 cut(s) 372, 382
Hsp92II CATG 1 cut(s) 344
HspAI GCGC 1 cut(s) 654
Ksp22I TGATCA 1 cut(s) 243
Kzo9I GATC 7 cut(s) 160, 228, 243, 420, 446, 589, 594
LmnI GCTCC 1 cut(s) 435
LpnPI CCDG 5 cut(s) 41, 276, 435, 549, 628
Lsp1109I GCAGC 1 cut(s) 585
MaeI CTAG 2 cut(s) 323, 351
MaeII ACGT 2 cut(s) 372, 382
MaeIII GTNAC 1 cut(s) 174
MalI GATC 7 cut(s) 162, 230, 245, 422, 448, 591, 596
MboI GATC 7 cut(s) 160, 228, 243, 420, 446, 589, 594
MflI RGATCY 2 cut(s) 228, 589
MhlI GDGCHC 1 cut(s) 285
MluCI AATT 2 cut(s) 86, 484
MlyI GAGTC 2 cut(s) 25, 250
MmeI TCCRAC 1 cut(s) 365
MnlI CCTC 7 cut(s) 66, 70, 460, 463, 474, 511, 524
MseI TTAA 1 cut(s) 225
MspI CCGG 1 cut(s) 615
MvnI CGCG 4 cut(s) 140, 173, 656, 676
MwoI GCNNNNNNNGC 3 cut(s) 558, 579, 582
NdeII GATC 7 cut(s) 160, 228, 243, 420, 446, 589, 594
NlaIII CATG 1 cut(s) 344
NmeAIII GCCGAG 1 cut(s) 335
PfeI GAWTC 5 cut(s) 52, 622, 628, 659, 683
PkrI GCNGC 2 cut(s) 575, 584
PleI GAGTC 2 cut(s) 25, 250
PpsI GAGTC 2 cut(s) 25, 250
PstNI CAGNNNCTG 1 cut(s) 34
PsuI RGATCY 2 cut(s) 228, 589
RsaI GTAC 1 cut(s) 512
RsaNI GTAC 1 cut(s) 511
SaqAI TTAA 1 cut(s) 225
SatI GCNGC 2 cut(s) 574, 583
Sau3AI GATC 7 cut(s) 160, 228, 243, 420, 446, 589, 594
SchI GAGTC 2 cut(s) 25, 250
SduI GDGCHC 1 cut(s) 285
SetI ASST 6 cut(s) 157, 375, 385, 440, 671, 698
SfcI CTRYAG 1 cut(s) 150
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
Sse9I AATT 2 cut(s) 86, 484
SsiI CCGC 4 cut(s) 140, 552, 583, 656
SspMI CTAG 2 cut(s) 323, 351
TaaI ACNGT 1 cut(s) 427
TaiI ACGT 2 cut(s) 375, 385
TaqI TCGA 4 cut(s) 107, 189, 568, 692
TasI AATT 2 cut(s) 86, 484
TauI GCSGC 1 cut(s) 585
TfiI GAWTC 5 cut(s) 52, 622, 628, 659, 683
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
TscAI CASTG 1 cut(s) 568
TseI GCWGC 1 cut(s) 573
TspDTI ATGAA 3 cut(s) 53, 113, 329
TspGWI ACGGA 2 cut(s) 108, 509
TspRI CASTG 1 cut(s) 568
XapI RAATTY 2 cut(s) 86, 484
XspI CTAG 2 cut(s) 323, 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.