Prupe.1G231500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0013386
Physical Location & Seq
Reverse (-)
24669001 .. 24670452
1452 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G231500.1

Sequence Viewer

Length: 939 bp
ATGGATTCCCGGGTATCCTTGGCGTCCCAGGAATCAACAATTGGAATCAAAATGATCAATGCAAGACGGCGCCCGTTGCACACATGTGCGGTTTCAATCTTAGTGATATCTCACAGAGCCTTCACCATAGCCCAAGGTTTCAGTGGACCCTTAGGCTTCATAGTAAAATTTGCAGCCAGAGTGGCTACATTGGGCGGACCCTTGGCCTATGCCTTGCAATACCAATGGATCACCATGGCAATCCTCTCCTTTATCGACAATCGAATTTTAGCCCTTGAAGACATGGTCGAGAGATTCTACCCTCCATCCCACATTGTGTTTAACAAGATCGATGATCTGGTTAGGGTCACCGAAACCCTACCCGGAAAATTCGATAATGTCGTCAGCAAAATCCCCGCTTGCGTCAGCCATGTTTCGTTTTTGGATTGGACATTGGTTCGTGCTATTTCATTGCTGAATTTTGTGGTGGCTACATTATTGAGTTATTGGAGAATGTCAAAGGGTACAAAGGAGAAGGAGATTAAGGTTGATACAAGCAGCAAAGTTGAACGCAACAATGAACCGGGTTTTGTTCATGAAGCAGACGGGCCTAAAGAACCCTTAACCCCAAGTAATAATAATAAATGTGCAGGTGGTGATCAGATTGATAAGGGTAATATTATGTCTCCTCGTCACGTAGGTGTTACCAAGGGTGCTACTTACAAGGAAGTACTTTTACAGAAGGCAACAAATAAGGCAGGGGTTGAAAAAAAAGAAGAGCAAAATATTAATAACAAGGAAGAAGTGGAGAGCTCAATTGCTGATGATGATGATGAAAGTGAAACCAATTCTAAGGATGATGGGCTCCTAGAATTGTTCGAATCGGCATGGCTTATGACCTCGCCCGGAAGAAACGCAAGTAGAAACTACACGCCGCGCTCTCTTTCATTCACTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

313

Amino Acids

34.64

Weight (kDa)

6.62

Isoelectric Point (pI)

46.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013386)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67540 AT1G67540
fragaria_vesca FvH4_4g24090
malus_domestica MD13G1115600.v1.1 MD16G1115600.v1.1
prunus_persica Prupe.1G231500_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0430861
rosa_laevigata RLG00000006945
rosa_multiflora Rmu_sc0002620.1_g000003 Rmu_sc0006263.1_g000006
rosa_roxburghii Rroxscaffold_5G00372530
rosa_rugosa Rorug04G0246000.1
rosa_samantha Rh4AG302300 Rh4BG310400 Rh4CG326700 Rh4CG326800 Rh4DG306500
rosa_wichuraiana Rw4G026270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 620
Acc36I ACCTGC 1 cut(s) 620
AccB1I GGYRCC 1 cut(s) 69
AccII CGCG 1 cut(s) 916
AciI CCGC 4 cut(s) 89, 195, 396, 914
AclWI GGATC 1 cut(s) 236
AcsI RAATTY 4 cut(s) 167, 264, 368, 457
AcyI GRCGYC 2 cut(s) 23, 70
AdeI CACNNNGTG 1 cut(s) 316
AfaI GTAC 2 cut(s) 505, 711
AflIII ACRYGT 1 cut(s) 83
AgsI TTSAA 4 cut(s) 96, 278, 548, 746
AjnI CCWGG 1 cut(s) 27
AjuI GAANNNNNNNTTGG 2 cut(s) 24, 56
AleI CACNNNNGTG 2 cut(s) 84, 678
AluBI AGCT 1 cut(s) 792
AluI AGCT 1 cut(s) 792
Alw21I GWGCWC 1 cut(s) 794
Alw26I GTCTC 1 cut(s) 669
AlwI GGATC 1 cut(s) 236
Ama87I CYCGRG 1 cut(s) 9
AoxI GGCC 2 cut(s) 204, 587
ApeKI GCWGC 2 cut(s) 173, 537
ApoI RAATTY 4 cut(s) 167, 264, 368, 457
AseI ATTAAT 1 cut(s) 768
AspLEI GCGC 2 cut(s) 72, 918
AspS9I GGNCC 3 cut(s) 146, 197, 587
AsuC2I CCSGG 5 cut(s) 10, 11, 363, 564, 885
AsuHPI GGTGA 4 cut(s) 115, 223, 340, 647
AsuII TTCGAA 1 cut(s) 858
AvaI CYCGRG 1 cut(s) 9
AvaII GGWCC 2 cut(s) 146, 197
AxyI CCTNAGG 1 cut(s) 151
BanI GGYRCC 1 cut(s) 69
BanII GRGCYC 2 cut(s) 794, 846
BarI GAAGNNNNNNTAC 2 cut(s) 699, 731
BbsI GAAGAC 1 cut(s) 285
Bbv12I GWGCWC 1 cut(s) 794
BbvI GCAGC 2 cut(s) 185, 549
BccI CCATC 2 cut(s) 313, 833
BceAI ACGGC 1 cut(s) 83
BciT130I CCWGG 1 cut(s) 29
BciVI GTATCC 1 cut(s) 25
BclI TGATCA 2 cut(s) 54, 637
BcnI CCSGG 5 cut(s) 10, 11, 363, 564, 885
BcoDI GTCTC 1 cut(s) 669
BfaI CTAG 1 cut(s) 848
BfoI RGCGCY 1 cut(s) 73
BfuAI ACCTGC 1 cut(s) 620
BfuI GTATCC 1 cut(s) 25
BglI GCCNNNNNGGC 1 cut(s) 182
BisI GCNGC 3 cut(s) 174, 538, 914
BlsI GCNGC 3 cut(s) 175, 539, 915
BmcAI AGTACT 1 cut(s) 711
Bme1390I CCNGG 6 cut(s) 10, 11, 29, 363, 564, 885
Bme18I GGWCC 2 cut(s) 146, 197
BmeT110I CYCGRG 1 cut(s) 9
BmgT120I GGNCC 3 cut(s) 146, 197, 587
BmiI GGNNCC 4 cut(s) 71, 148, 199, 845
BmrFI CCNGG 6 cut(s) 10, 11, 29, 363, 564, 885
BpiI GAAGAC 1 cut(s) 285
Bpu14I TTCGAA 1 cut(s) 858
BpuMI CCSGG 5 cut(s) 10, 11, 363, 564, 885
Bsa29I ATCGAT 1 cut(s) 330
BsaAI YACGTR 1 cut(s) 676
BsaHI GRCGYC 2 cut(s) 23, 70
BsaJI CCNNGG 7 cut(s) 9, 18, 27, 133, 201, 234, 687
Bse21I CCTNAGG 1 cut(s) 151
Bse3DI GCAATG 1 cut(s) 449
BseBI CCWGG 1 cut(s) 29
BseCI ATCGAT 1 cut(s) 330
BseDI CCNNGG 7 cut(s) 9, 18, 27, 133, 201, 234, 687
BseGI GGATG 2 cut(s) 305, 841
BseMI GCAATG 1 cut(s) 449
BseRI GAGGAG 1 cut(s) 657
BseXI GCAGC 2 cut(s) 185, 549
BsgI GTGCAG 1 cut(s) 648
Bsh1236I CGCG 1 cut(s) 916
BshFI GGCC 2 cut(s) 206, 589
BshNI GGYRCC 1 cut(s) 69
BshVI ATCGAT 1 cut(s) 330
BsiHKAI GWGCWC 1 cut(s) 794
BsiHKCI CYCGRG 1 cut(s) 9
BsiSI CCGG 4 cut(s) 10, 363, 563, 885
BslFI GGGAC 1 cut(s) 10
BsmAI GTCTC 1 cut(s) 669
BsmFI GGGAC 1 cut(s) 10
BsnI GGCC 2 cut(s) 206, 589
BsoBI CYCGRG 1 cut(s) 9
Bsp119I TTCGAA 1 cut(s) 858
Bsp1286I GDGCHC 2 cut(s) 794, 846
Bsp143I GATC 5 cut(s) 54, 228, 327, 334, 637
Bsp19I CCATGG 1 cut(s) 234
BspACI CCGC 4 cut(s) 89, 195, 396, 914
BspANI GGCC 2 cut(s) 206, 589
BspDI ATCGAT 1 cut(s) 330
BspFNI CGCG 1 cut(s) 916
BspHI TCATGA 1 cut(s) 574
BspLI GGNNCC 4 cut(s) 71, 148, 199, 845
BspMI ACCTGC 1 cut(s) 620
BspPI GGATC 1 cut(s) 236
BspQI GCTCTTC 1 cut(s) 750
BspT104I TTCGAA 1 cut(s) 858
BspT107I GGYRCC 1 cut(s) 69
BsrDI GCAATG 1 cut(s) 449
BssECI CCNNGG 7 cut(s) 9, 18, 27, 133, 201, 234, 687
BssMI GATC 5 cut(s) 54, 228, 327, 334, 637
BssNI GRCGYC 2 cut(s) 23, 70
BssT1I CCWWGG 5 cut(s) 18, 133, 201, 234, 687
Bst2UI CCWGG 1 cut(s) 29
Bst6I CTCTTC 1 cut(s) 750
BstACI GRCGYC 2 cut(s) 23, 70
BstBAI YACGTR 1 cut(s) 676
BstBI TTCGAA 1 cut(s) 858
BstC8I GCNNGC 1 cut(s) 400
BstDEI CTNAG 3 cut(s) 100, 151, 831
BstDSI CCRYGG 1 cut(s) 234
BstEII GGTNACC 1 cut(s) 346
BstF5I GGATG 2 cut(s) 305, 841
BstFNI CGCG 1 cut(s) 916
BstH2I RGCGCY 1 cut(s) 73
BstHHI GCGC 2 cut(s) 72, 918
BstKTI GATC 5 cut(s) 57, 231, 330, 337, 640
BstMAI GTCTC 1 cut(s) 669
BstMBI GATC 5 cut(s) 54, 228, 327, 334, 637
BstMWI GCNNNNNNNGC 2 cut(s) 76, 182
BstNI CCWGG 1 cut(s) 29
BstNSI RCATGY 1 cut(s) 87
BstPI GGTNACC 1 cut(s) 346
BstSCI CCNGG 6 cut(s) 8, 9, 27, 361, 562, 883
BstUI CGCG 1 cut(s) 916
BstV1I GCAGC 2 cut(s) 185, 549
BstV2I GAAGAC 1 cut(s) 285
Bsu15I ATCGAT 1 cut(s) 330
Bsu36I CCTNAGG 1 cut(s) 151
BsuI GTATCC 1 cut(s) 25
BsuRI GGCC 2 cut(s) 206, 589
BsuTUI ATCGAT 1 cut(s) 330
BtgI CCRYGG 1 cut(s) 234
BtsCI GGATG 2 cut(s) 305, 841
BtsIMutI CAGTG 1 cut(s) 148
BveI ACCTGC 1 cut(s) 620
Cac8I GCNNGC 1 cut(s) 400
CciI TCATGA 1 cut(s) 574
CfoI GCGC 2 cut(s) 72, 918
Cfr13I GGNCC 3 cut(s) 146, 197, 587
Cfr9I CCCGGG 1 cut(s) 9
ClaI ATCGAT 1 cut(s) 330
CseI GACGC 2 cut(s) 12, 391
Csp6I GTAC 2 cut(s) 504, 710
CviAII CATG 6 cut(s) 84, 235, 283, 410, 575, 867
CviQI GTAC 2 cut(s) 504, 710
DdeI CTNAG 3 cut(s) 100, 151, 831
DinI GGCGCC 1 cut(s) 71
DpnI GATC 5 cut(s) 56, 230, 329, 336, 639
DpnII GATC 5 cut(s) 54, 228, 327, 334, 637
DraIII CACNNNGTG 1 cut(s) 316
Eam1104I CTCTTC 1 cut(s) 750
EarI CTCTTC 1 cut(s) 750
EciI GGCGGA 1 cut(s) 210
Ecl136II GAGCTC 1 cut(s) 792
Eco130I CCWWGG 5 cut(s) 18, 133, 201, 234, 687
Eco24I GRGCYC 2 cut(s) 794, 846
Eco32I GATATC 1 cut(s) 108
Eco47I GGWCC 2 cut(s) 146, 197
Eco53kI GAGCTC 1 cut(s) 792
Eco81I CCTNAGG 1 cut(s) 151
Eco88I CYCGRG 1 cut(s) 9
Eco91I GGTNACC 1 cut(s) 346
EcoICRI GAGCTC 1 cut(s) 792
EcoO65I GGTNACC 1 cut(s) 346
EcoRII CCWGG 1 cut(s) 27
EcoRV GATATC 1 cut(s) 108
EcoT14I CCWWGG 5 cut(s) 18, 133, 201, 234, 687
EcoT38I GRGCYC 2 cut(s) 794, 846
EgeI GGCGCC 1 cut(s) 71
EheI GGCGCC 1 cut(s) 71
ErhI CCWWGG 5 cut(s) 18, 133, 201, 234, 687
FaeI CATG 6 cut(s) 87, 238, 286, 413, 578, 870
FaqI GGGAC 1 cut(s) 10
FatI CATG 6 cut(s) 83, 234, 282, 409, 574, 866
FauI CCCGC 1 cut(s) 403
FbaI TGATCA 2 cut(s) 54, 637
Fnu4HI GCNGC 3 cut(s) 174, 538, 914
FokI GGATG 2 cut(s) 292, 848
FriOI GRGCYC 2 cut(s) 794, 846
Fsp4HI GCNGC 3 cut(s) 174, 538, 914
FspBI CTAG 1 cut(s) 848
GlaI GCGC 2 cut(s) 71, 917
GluI GCNGC 3 cut(s) 174, 538, 914
HaeII RGCGCY 1 cut(s) 73
HaeIII GGCC 2 cut(s) 206, 589
HapII CCGG 4 cut(s) 10, 363, 563, 885
HgaI GACGC 2 cut(s) 12, 391
HhaI GCGC 2 cut(s) 72, 918
Hin1I GRCGYC 2 cut(s) 23, 70
Hin1II CATG 6 cut(s) 87, 238, 286, 413, 578, 870
Hin6I GCGC 2 cut(s) 70, 916
HinP1I GCGC 2 cut(s) 70, 916
HinfI GANTC 5 cut(s) 5, 32, 45, 294, 860
HpaII CCGG 4 cut(s) 10, 363, 563, 885
HphI GGTGA 4 cut(s) 115, 223, 340, 647
Hpy166II GTNNAC 1 cut(s) 146
Hpy188I TCNGA 1 cut(s) 642
Hpy188III TCNNGA 2 cut(s) 289, 575
Hpy8I GTNNAC 1 cut(s) 146
HpyAV CCTTC 3 cut(s) 130, 508, 715
HpyCH4IV ACGT 1 cut(s) 675
HpyCH4V TGCA 5 cut(s) 62, 79, 173, 217, 629
HpyF10VI GCNNNNNNNGC 2 cut(s) 76, 182
HpyF3I CTNAG 3 cut(s) 100, 151, 831
HpySE526I ACGT 1 cut(s) 675
Hsp92I GRCGYC 2 cut(s) 23, 70
Hsp92II CATG 6 cut(s) 87, 238, 286, 413, 578, 870
HspAI GCGC 2 cut(s) 70, 916
KasI GGCGCC 1 cut(s) 69
Ksp22I TGATCA 2 cut(s) 54, 637
Kzo9I GATC 5 cut(s) 54, 228, 327, 334, 637
LguI GCTCTTC 1 cut(s) 750
LmnI GCTCC 1 cut(s) 849
Lsp1109I GCAGC 2 cut(s) 185, 549
MaeI CTAG 1 cut(s) 848
MaeII ACGT 1 cut(s) 675
MaeIII GTNAC 3 cut(s) 346, 671, 682
MalI GATC 5 cut(s) 56, 230, 329, 336, 639
MboI GATC 5 cut(s) 54, 228, 327, 334, 637
MboII GAAGA 4 cut(s) 290, 767, 791, 900
MfeI CAATTG 2 cut(s) 39, 795
MhlI GDGCHC 2 cut(s) 794, 846
MluCI AATT 8 cut(s) 39, 167, 264, 368, 457, 795, 826, 851
Mly113I GGCGCC 1 cut(s) 70
MnlI CCTC 4 cut(s) 254, 312, 678, 889
MseI TTAA 5 cut(s) 321, 522, 602, 768, 937
MslI CAYNNNNRTG 2 cut(s) 84, 678
MspI CCGG 4 cut(s) 10, 363, 563, 885
MspR9I CCNGG 6 cut(s) 10, 11, 29, 363, 564, 885
MunI CAATTG 2 cut(s) 39, 795
MvaI CCWGG 1 cut(s) 29
MvnI CGCG 1 cut(s) 916
MwoI GCNNNNNNNGC 2 cut(s) 76, 182
NarI GGCGCC 1 cut(s) 70
NciI CCSGG 5 cut(s) 10, 11, 363, 564, 885
NcoI CCATGG 1 cut(s) 234
NdeII GATC 5 cut(s) 54, 228, 327, 334, 637
NlaIII CATG 6 cut(s) 87, 238, 286, 413, 578, 870
NlaIV GGNNCC 4 cut(s) 71, 148, 199, 845
NmuCI GTSAC 2 cut(s) 346, 671
NspI RCATGY 1 cut(s) 87
NspV TTCGAA 1 cut(s) 858
OliI CACNNNNGTG 2 cut(s) 84, 678
PagI TCATGA 1 cut(s) 574
PaqCI CACCTGC 1 cut(s) 620
PciI ACATGT 1 cut(s) 83
PciSI GCTCTTC 1 cut(s) 750
PcsI WCGNNNNNNNCGW 1 cut(s) 378
PfeI GAWTC 5 cut(s) 5, 32, 45, 294, 860
PflFI GACNNNGTC 1 cut(s) 284
PkrI GCNGC 3 cut(s) 175, 539, 915
PluTI GGCGCC 1 cut(s) 73
Ppu21I YACGTR 1 cut(s) 676
PscI ACATGT 1 cut(s) 83
PshBI ATTAAT 1 cut(s) 768
Psp124BI GAGCTC 1 cut(s) 794
Psp6I CCWGG 1 cut(s) 27
PspEI GGTNACC 1 cut(s) 346
PspGI CCWGG 1 cut(s) 27
PspN4I GGNNCC 4 cut(s) 71, 148, 199, 845
PspPI GGNCC 3 cut(s) 146, 197, 587
PsyI GACNNNGTC 1 cut(s) 284
RsaI GTAC 2 cut(s) 505, 711
RsaNI GTAC 2 cut(s) 504, 710
RseI CAYNNNNRTG 2 cut(s) 84, 678
SacI GAGCTC 1 cut(s) 794
SapI GCTCTTC 1 cut(s) 750
SaqAI TTAA 5 cut(s) 321, 522, 602, 768, 937
SatI GCNGC 3 cut(s) 174, 538, 914
Sau3AI GATC 5 cut(s) 54, 228, 327, 334, 637
Sau96I GGNCC 3 cut(s) 146, 197, 587
ScaI AGTACT 1 cut(s) 711
ScrFI CCNGG 6 cut(s) 10, 11, 29, 363, 564, 885
SduI GDGCHC 2 cut(s) 794, 846
SetI ASST 7 cut(s) 139, 528, 634, 678, 682, 794, 881
SfoI GGCGCC 1 cut(s) 71
SfuI TTCGAA 1 cut(s) 858
SinI GGWCC 2 cut(s) 146, 197
SmaI CCCGGG 1 cut(s) 11
SmiMI CAYNNNNRTG 2 cut(s) 84, 678
Sse9I AATT 8 cut(s) 39, 167, 264, 368, 457, 795, 826, 851
SsiI CCGC 4 cut(s) 89, 195, 396, 914
SspDI GGCGCC 1 cut(s) 69
SspI AATATT 2 cut(s) 658, 766
SspMI CTAG 1 cut(s) 848
SstI GAGCTC 1 cut(s) 794
StyD4I CCNGG 6 cut(s) 8, 9, 27, 361, 562, 883
StyI CCWWGG 5 cut(s) 18, 133, 201, 234, 687
TaiI ACGT 1 cut(s) 678
TaqI TCGA 6 cut(s) 255, 262, 288, 330, 372, 858
TasI AATT 8 cut(s) 39, 167, 264, 368, 457, 795, 826, 851
TatI WGTACW 1 cut(s) 709
TauI GCSGC 1 cut(s) 916
TfiI GAWTC 5 cut(s) 5, 32, 45, 294, 860
Tru1I TTAA 5 cut(s) 321, 522, 602, 768, 937
Tru9I TTAA 5 cut(s) 321, 522, 602, 768, 937
TscAI CASTG 1 cut(s) 148
TseFI GTSAC 2 cut(s) 346, 671
TseI GCWGC 2 cut(s) 173, 537
Tsp45I GTSAC 2 cut(s) 346, 671
TspDTI ATGAA 7 cut(s) 148, 438, 563, 573, 591, 828, 915
TspMI CCCGGG 1 cut(s) 9
TspRI CASTG 1 cut(s) 148
Tth111I GACNNNGTC 1 cut(s) 284
VpaK11BI GGWCC 2 cut(s) 146, 197
VspI ATTAAT 1 cut(s) 768
XapI RAATTY 4 cut(s) 167, 264, 368, 457
XceI RCATGY 1 cut(s) 87
XcmI CCANNNNNNNNNTGG 1 cut(s) 140
XmaI CCCGGG 1 cut(s) 9
XspI CTAG 1 cut(s) 848
ZrmI AGTACT 1 cut(s) 711
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.