Rmu_sc0006263.1_g000006

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006263.1
OG0013386
Physical Location & Seq
Reverse (-)
28824 .. 29741
918 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006263.1_g000006.1.cds

Sequence Viewer

Length: 918 bp
atgatgagtaggaaacccccattgcacacttgtgcggtttccattttagtgatagctgacaaagcctgcaccaaagtccaaggtatacatggccctttaggcgtaatggcaaaggtggcagcaaaatttgcaacatttgccagccccattattatcttcatgcaatatcagtggatcataatggcagtcctatcatttattgatggtcgaatactagctgttgaaaacatgatagagatattttaccctccatcaagcatcgtgtttaacaagattgatgactttgtccaagtcgcagaaaccctccccgaaaaattagatgaagcaatgaataaactcccctcttctatccattctatccaccaaggttcggttttagattggggattggttcgtgccattacgatgctaaattttgttagtggtacgctgacttgctggagaatgtcaaaaggtgcgagggagaaggagattgtagttgataccagctgcaatgataataataatcatcatcacaatactaatgaagaagctgcagctaaagctaatggagctgcagagcagcttatagattcctcaaatcatgatgctaataataatatgaagagtaatcctagtactccacctcttggtgctattatgaagggtagttacaaggaagccctaaccaagggtaaaaaagaagggactgaaagtaaaaaagaaggaaacaagtataaaacgaacggcatacacagtaaaacagaagagaagtactacaacaaggaagaagtgaaatctgctgctgctgatgttaagaatggaggcaatggtcagggcgatatcctagacttgtttgacacggcatggctaatgaaccggaggagaagtttcgaaggaaaagcgccacggtcgctatcatttcacgggggttattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

305

Amino Acids

33.56

Weight (kDa)

8.51

Isoelectric Point (pI)

39.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013386)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67540 AT1G67540
fragaria_vesca FvH4_4g24090
malus_domestica MD13G1115600.v1.1 MD16G1115600.v1.1
prunus_persica Prupe.1G231500_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0430861
rosa_laevigata RLG00000006945
rosa_multiflora Rmu_sc0002620.1_g000003 Rmu_sc0006263.1_g000006
rosa_roxburghii Rroxscaffold_5G00372530
rosa_rugosa Rorug04G0246000.1
rosa_samantha Rh4AG302300 Rh4BG310400 Rh4CG326700 Rh4CG326800 Rh4DG306500
rosa_wichuraiana Rw4G026270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 629
AccI GTMKAC 1 cut(s) 85
AciI CCGC 1 cut(s) 35
AclWI GGATC 1 cut(s) 182
AcsI RAATTY 2 cut(s) 125, 412
AfaI GTAC 3 cut(s) 427, 619, 755
AfiI CCNNNNNNNGG 3 cut(s) 370, 629, 670
AgsI TTSAA 1 cut(s) 224
AleI CACNNNNGTG 1 cut(s) 30
AluBI AGCT 8 cut(s) 56, 218, 489, 533, 539, 545, 554, 565
AluI AGCT 8 cut(s) 56, 218, 489, 533, 539, 545, 554, 565
AlwI GGATC 1 cut(s) 182
AoxI GGCC 1 cut(s) 91
ApeKI GCWGC 8 cut(s) 119, 489, 533, 536, 554, 562, 782, 785
ApoI RAATTY 2 cut(s) 125, 412
AspLEI GCGC 1 cut(s) 886
AspS9I GGNCC 1 cut(s) 92
AsuII TTCGAA 1 cut(s) 873
BarI GAAGNNNNNNTAC 2 cut(s) 635, 667
BbvI GCAGC 8 cut(s) 131, 476, 520, 541, 548, 574, 769, 772
BccI CCATC 2 cut(s) 197, 259
BceAI ACGGC 2 cut(s) 742, 858
BfaI CTAG 3 cut(s) 215, 615, 827
BfmI CTRYAG 2 cut(s) 534, 555
BfoI RGCGCY 1 cut(s) 887
BglI GCCNNNNNGGC 1 cut(s) 99
BisI GCNGC 8 cut(s) 120, 490, 534, 537, 555, 563, 783, 786
BlsI GCNGC 8 cut(s) 121, 491, 535, 538, 556, 564, 784, 787
BmcAI AGTACT 2 cut(s) 619, 755
BmgT120I GGNCC 1 cut(s) 92
BmsI GCATC 3 cut(s) 267, 396, 577
BpmI CTGGAG 1 cut(s) 460
Bpu14I TTCGAA 1 cut(s) 873
BsaJI CCNNGG 4 cut(s) 79, 364, 669, 887
BsaWI WCCGGW 1 cut(s) 858
BsaXI ACNNNNNCTCC 2 cut(s) 853, 883
Bsc4I CCNNNNNNNGG 3 cut(s) 370, 629, 670
Bse3DI GCAATG 4 cut(s) 20, 333, 499, 814
BseDI CCNNGG 4 cut(s) 79, 364, 669, 887
BseLI CCNNNNNNNGG 3 cut(s) 370, 629, 670
BseMI GCAATG 4 cut(s) 20, 333, 499, 814
BseRI GAGGAG 1 cut(s) 877
BseXI GCAGC 8 cut(s) 131, 476, 520, 541, 548, 574, 769, 772
BsgI GTGCAG 1 cut(s) 52
Bsh1285I CGRYCG 1 cut(s) 893
BshFI GGCC 1 cut(s) 93
BsiEI CGRYCG 1 cut(s) 893
BsiSI CCGG 1 cut(s) 859
BslFI GGGAC 1 cut(s) 700
BslI CCNNNNNNNGG 3 cut(s) 370, 629, 670
BsmFI GGGAC 1 cut(s) 700
BsnI GGCC 1 cut(s) 93
Bsp119I TTCGAA 1 cut(s) 873
Bsp143I GATC 1 cut(s) 174
BspACI CCGC 1 cut(s) 35
BspANI GGCC 1 cut(s) 93
BspHI TCATGA 1 cut(s) 583
BspMAI CTGCAG 2 cut(s) 538, 559
BspPI GGATC 1 cut(s) 182
BspT104I TTCGAA 1 cut(s) 873
BsrDI GCAATG 4 cut(s) 20, 333, 499, 814
BssECI CCNNGG 4 cut(s) 79, 364, 669, 887
BssMI GATC 1 cut(s) 174
BssNAI GTATAC 1 cut(s) 86
BssT1I CCWWGG 3 cut(s) 79, 364, 669
Bst1107I GTATAC 1 cut(s) 86
Bst4CI ACNGT 2 cut(s) 737, 891
Bst6I CTCTTC 3 cut(s) 349, 599, 741
BstAPI GCANNNNNTGC 2 cut(s) 128, 137
BstBI TTCGAA 1 cut(s) 873
BstC8I GCNNGC 2 cut(s) 67, 142
BstDSI CCRYGG 1 cut(s) 887
BstENI CCTNNNNNAGG 1 cut(s) 668
BstH2I RGCGCY 1 cut(s) 887
BstHHI GCGC 1 cut(s) 886
BstKTI GATC 1 cut(s) 177
BstMBI GATC 1 cut(s) 174
BstMCI CGRYCG 1 cut(s) 893
BstMWI GCNNNNNNNGC 8 cut(s) 62, 99, 116, 128, 137, 542, 551, 892
BstSFI CTRYAG 2 cut(s) 534, 555
BstV1I GCAGC 8 cut(s) 131, 476, 520, 541, 548, 574, 769, 772
BstZ17I GTATAC 1 cut(s) 86
BsuRI GGCC 1 cut(s) 93
BtgI CCRYGG 1 cut(s) 887
BtsIMutI CAGTG 1 cut(s) 176
Cac8I GCNNGC 2 cut(s) 67, 142
CciI TCATGA 1 cut(s) 583
CfoI GCGC 1 cut(s) 886
Cfr13I GGNCC 1 cut(s) 92
Csp6I GTAC 3 cut(s) 426, 618, 754
CspCI CAANNNNNGTGG 2 cut(s) 152, 187
CviAII CATG 5 cut(s) 89, 160, 229, 584, 846
CviQI GTAC 3 cut(s) 426, 618, 754
DpnI GATC 1 cut(s) 176
DpnII GATC 1 cut(s) 174
Eam1104I CTCTTC 3 cut(s) 349, 599, 741
EarI CTCTTC 3 cut(s) 349, 599, 741
Eco130I CCWWGG 3 cut(s) 79, 364, 669
Eco32I GATATC 1 cut(s) 823
EcoNI CCTNNNNNAGG 1 cut(s) 668
EcoRV GATATC 1 cut(s) 823
EcoT14I CCWWGG 3 cut(s) 79, 364, 669
ErhI CCWWGG 3 cut(s) 79, 364, 669
FaeI CATG 5 cut(s) 92, 163, 232, 587, 849
FaqI GGGAC 1 cut(s) 700
FatI CATG 5 cut(s) 88, 159, 228, 583, 845
FblI GTMKAC 1 cut(s) 85
Fnu4HI GCNGC 8 cut(s) 120, 490, 534, 537, 555, 563, 783, 786
Fsp4HI GCNGC 8 cut(s) 120, 490, 534, 537, 555, 563, 783, 786
FspBI CTAG 3 cut(s) 215, 615, 827
GlaI GCGC 1 cut(s) 885
GluI GCNGC 8 cut(s) 120, 490, 534, 537, 555, 563, 783, 786
GsuI CTGGAG 1 cut(s) 460
HaeII RGCGCY 1 cut(s) 887
HaeIII GGCC 1 cut(s) 93
HapII CCGG 1 cut(s) 859
HhaI GCGC 1 cut(s) 886
Hin1II CATG 5 cut(s) 92, 163, 232, 587, 849
Hin6I GCGC 1 cut(s) 884
HinP1I GCGC 1 cut(s) 884
HinfI GANTC 1 cut(s) 572
HpaII CCGG 1 cut(s) 859
Hpy166II GTNNAC 1 cut(s) 86
Hpy188III TCNNGA 1 cut(s) 584
Hpy8I GTNNAC 1 cut(s) 86
HpyAV CCTTC 5 cut(s) 460, 637, 677, 698, 869
HpyCH4III ACNGT 2 cut(s) 737, 891
HpyCH4V TGCA 7 cut(s) 25, 69, 131, 163, 492, 536, 557
HpyF10VI GCNNNNNNNGC 8 cut(s) 62, 99, 116, 128, 137, 542, 551, 892
Hsp92II CATG 5 cut(s) 92, 163, 232, 587, 849
HspAI GCGC 1 cut(s) 884
Kzo9I GATC 1 cut(s) 174
LmnI GCTCC 1 cut(s) 551
LpnPI CCDG 6 cut(s) 79, 154, 424, 499, 800, 872
Lsp1109I GCAGC 8 cut(s) 131, 476, 520, 541, 548, 574, 769, 772
LweI GCATC 3 cut(s) 267, 396, 577
MaeI CTAG 3 cut(s) 215, 615, 827
MaeIII GTNAC 1 cut(s) 650
MalI GATC 1 cut(s) 176
MboI GATC 1 cut(s) 174
MboII GAAGA 6 cut(s) 148, 336, 539, 616, 758, 779
MluCI AATT 3 cut(s) 125, 314, 412
MnlI CCTC 8 cut(s) 258, 314, 352, 453, 586, 636, 797, 855
MseI TTAA 3 cut(s) 267, 795, 916
MslI CAYNNNNRTG 3 cut(s) 30, 47, 404
MspA1I CMGCKG 1 cut(s) 489
MspI CCGG 1 cut(s) 859
MwoI GCNNNNNNNGC 8 cut(s) 62, 99, 116, 128, 137, 542, 551, 892
NdeII GATC 1 cut(s) 174
NlaIII CATG 5 cut(s) 92, 163, 232, 587, 849
NspV TTCGAA 1 cut(s) 873
OliI CACNNNNGTG 1 cut(s) 30
PagI TCATGA 1 cut(s) 583
PfeI GAWTC 1 cut(s) 572
PflFI GACNNNGTC 1 cut(s) 284
PflMI CCANNNNNTGG 1 cut(s) 629
PkrI GCNGC 8 cut(s) 121, 491, 535, 538, 556, 564, 784, 787
PspPI GGNCC 1 cut(s) 92
PstI CTGCAG 2 cut(s) 538, 559
PsyI GACNNNGTC 1 cut(s) 284
PvuII CAGCTG 1 cut(s) 489
RsaI GTAC 3 cut(s) 427, 619, 755
RsaNI GTAC 3 cut(s) 426, 618, 754
RseI CAYNNNNRTG 3 cut(s) 30, 47, 404
SaqAI TTAA 3 cut(s) 267, 795, 916
SatI GCNGC 8 cut(s) 120, 490, 534, 537, 555, 563, 783, 786
Sau3AI GATC 1 cut(s) 174
Sau96I GGNCC 1 cut(s) 92
ScaI AGTACT 2 cut(s) 619, 755
SfaNI GCATC 3 cut(s) 267, 396, 577
SfcI CTRYAG 2 cut(s) 534, 555
SfuI TTCGAA 1 cut(s) 873
SmiMI CAYNNNNRTG 3 cut(s) 30, 47, 404
Sse9I AATT 3 cut(s) 125, 314, 412
SsiI CCGC 1 cut(s) 35
SspMI CTAG 3 cut(s) 215, 615, 827
StyI CCWWGG 3 cut(s) 79, 364, 669
TaaI ACNGT 2 cut(s) 737, 891
TaqI TCGA 2 cut(s) 208, 873
TasI AATT 3 cut(s) 125, 314, 412
TatI WGTACW 2 cut(s) 617, 753
TfiI GAWTC 1 cut(s) 572
Tru1I TTAA 3 cut(s) 267, 795, 916
Tru9I TTAA 3 cut(s) 267, 795, 916
TscAI CASTG 1 cut(s) 176
TseI GCWGC 8 cut(s) 119, 489, 533, 536, 554, 562, 782, 785
TspDTI ATGAA 7 cut(s) 148, 336, 344, 540, 617, 656, 869
TspRI CASTG 1 cut(s) 176
Tth111I GACNNNGTC 1 cut(s) 284
Van91I CCANNNNNTGG 1 cut(s) 629
XagI CCTNNNNNAGG 1 cut(s) 668
XapI RAATTY 2 cut(s) 125, 412
XcmI CCANNNNNNNNNTGG 1 cut(s) 86
XmiI GTMKAC 1 cut(s) 85
XspI CTAG 3 cut(s) 215, 615, 827
ZrmI AGTACT 2 cut(s) 619, 755
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.