RchiOBHm_Chr4g0430861

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0013386
Physical Location & Seq
Reverse (-)
55244226 .. 55245649
1424 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39957

Sequence Viewer

Length: 960 bp
ATGGATTCCCGGGCTTCGCTTGCGTCCCAGGAATCAACAACCCAAATCAAAATGATGAGTAGGAAACGCCCATTGCACACTTGTGCGGTTTCCATTTTAGTGATAGCTGACAAAGCCTGCACCAAAGTCCAAGGTATACATGGCCCTTTAGGCGTAATGGCAAAGGTGGCAGCAAAATTTGCAACATTTGCCAGCCCCATTATTATCTTCATGCAATATCAGTGGATCATAATGGCAGTCCTATCATTTATTGATGGTCGAATACTAGCTGTTGAAAACATGATAGAGAGATTTTACCCTCCATCAAGCATCGTGTTTAACAAGATTGATGACTTTGTCCAAGTCGCAGAAACCCTCCCCGAAAAATTAGATGAAGCAATGAATAAACTCCCCTCTTCTATCCACCAAGGTTCGGTTTTAGATTGGGGATTGGTTCGTGCCATTATGATGCTAAATTTTGTTAGTGGTACGCTGACTTGCTGGAGAATGTCAAAAGGTGCGAGGGAGAAGGAGATTGTAGTTGATACCAGCTGCAATGATAATAATAATCATCATCACAATACTAATGAAGAAGCTGCAGCTAAAGCTAATGGAGCTGCAGAGCAGCTTCTAGATTCCTCAAAGCATGATGCTAATAATAATATGAAGAGTAATCCTAGTACTCCACCTCTTGGTGCTATTATGAAGGGTAGTTACAAGGAAGCCCTAACCAAGGGTAAAAAAGAAGGGACTGAAAGTAAAAAAGAAGGAAACAAGTATAAAACGAACGGCATACACAGTAAAACAGAAGAGAAGTACTACAACAAGGAAGAAGTGAAATCTGCTGCTGCTGATGTTAAGAATGGAGGCAATCGTCAGGGTGATATCCTAGACTTGTTTGACACGGCATGGCTAATGAACCGGAGGAGAAGTTTCGAAGGAAAAGCGCCACGGTCGCTATCATTTCACGGGGGTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

319

Amino Acids

35.3

Weight (kDa)

9.08

Isoelectric Point (pI)

43.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013386)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67540 AT1G67540
fragaria_vesca FvH4_4g24090
malus_domestica MD13G1115600.v1.1 MD16G1115600.v1.1
prunus_persica Prupe.1G231500_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0430861
rosa_laevigata RLG00000006945
rosa_multiflora Rmu_sc0002620.1_g000003 Rmu_sc0006263.1_g000006
rosa_roxburghii Rroxscaffold_5G00372530
rosa_rugosa Rorug04G0246000.1
rosa_samantha Rh4AG302300 Rh4BG310400 Rh4CG326700 Rh4CG326800 Rh4DG306500
rosa_wichuraiana Rw4G026270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 671
AccI GTMKAC 1 cut(s) 136
AciI CCGC 1 cut(s) 86
AclWI GGATC 1 cut(s) 233
AcsI RAATTY 2 cut(s) 176, 454
AfaI GTAC 3 cut(s) 469, 661, 797
AfiI CCNNNNNNNGG 3 cut(s) 412, 671, 712
AgsI TTSAA 1 cut(s) 275
AjnI CCWGG 1 cut(s) 27
AleI CACNNNNGTG 1 cut(s) 81
AluBI AGCT 8 cut(s) 107, 269, 531, 575, 581, 587, 596, 607
AluI AGCT 8 cut(s) 107, 269, 531, 575, 581, 587, 596, 607
AlwI GGATC 1 cut(s) 233
Ama87I CYCGRG 1 cut(s) 9
AoxI GGCC 1 cut(s) 142
ApeKI GCWGC 8 cut(s) 170, 531, 575, 578, 596, 604, 824, 827
ApoI RAATTY 2 cut(s) 176, 454
AspLEI GCGC 1 cut(s) 928
AspS9I GGNCC 1 cut(s) 143
AsuC2I CCSGG 2 cut(s) 10, 11
AsuHPI GGTGA 1 cut(s) 872
AsuII TTCGAA 1 cut(s) 915
AvaI CYCGRG 1 cut(s) 9
BarI GAAGNNNNNNTAC 2 cut(s) 677, 709
BbvI GCAGC 8 cut(s) 182, 518, 562, 583, 590, 616, 811, 814
BccI CCATC 2 cut(s) 248, 310
BceAI ACGGC 2 cut(s) 784, 900
BciT130I CCWGG 1 cut(s) 29
BcnI CCSGG 2 cut(s) 10, 11
BfaI CTAG 4 cut(s) 266, 611, 657, 869
BfmI CTRYAG 2 cut(s) 576, 597
BfoI RGCGCY 1 cut(s) 929
BglI GCCNNNNNGGC 1 cut(s) 150
BisI GCNGC 8 cut(s) 171, 532, 576, 579, 597, 605, 825, 828
BlsI GCNGC 8 cut(s) 172, 533, 577, 580, 598, 606, 826, 829
BmcAI AGTACT 2 cut(s) 661, 797
Bme1390I CCNGG 3 cut(s) 10, 11, 29
BmeT110I CYCGRG 1 cut(s) 9
BmgT120I GGNCC 1 cut(s) 143
BmrFI CCNGG 3 cut(s) 10, 11, 29
BmsI GCATC 3 cut(s) 318, 438, 619
BpmI CTGGAG 1 cut(s) 502
Bpu14I TTCGAA 1 cut(s) 915
BpuMI CCSGG 2 cut(s) 10, 11
BsaJI CCNNGG 6 cut(s) 9, 27, 130, 406, 711, 929
BsaWI WCCGGW 1 cut(s) 900
BsaXI ACNNNNNCTCC 2 cut(s) 895, 925
Bsc4I CCNNNNNNNGG 3 cut(s) 412, 671, 712
Bse3DI GCAATG 3 cut(s) 71, 384, 541
BseBI CCWGG 1 cut(s) 29
BseDI CCNNGG 6 cut(s) 9, 27, 130, 406, 711, 929
BseLI CCNNNNNNNGG 3 cut(s) 412, 671, 712
BseMI GCAATG 3 cut(s) 71, 384, 541
BseRI GAGGAG 1 cut(s) 919
BseXI GCAGC 8 cut(s) 182, 518, 562, 583, 590, 616, 811, 814
BsgI GTGCAG 1 cut(s) 103
Bsh1285I CGRYCG 1 cut(s) 935
BshFI GGCC 1 cut(s) 144
BsiEI CGRYCG 1 cut(s) 935
BsiHKCI CYCGRG 1 cut(s) 9
BsiSI CCGG 2 cut(s) 10, 901
BslFI GGGAC 2 cut(s) 10, 742
BslI CCNNNNNNNGG 3 cut(s) 412, 671, 712
BsmFI GGGAC 2 cut(s) 10, 742
BsnI GGCC 1 cut(s) 144
BsoBI CYCGRG 1 cut(s) 9
Bsp119I TTCGAA 1 cut(s) 915
Bsp143I GATC 1 cut(s) 225
BspACI CCGC 1 cut(s) 86
BspANI GGCC 1 cut(s) 144
BspMAI CTGCAG 2 cut(s) 580, 601
BspPI GGATC 1 cut(s) 233
BspT104I TTCGAA 1 cut(s) 915
BsrDI GCAATG 3 cut(s) 71, 384, 541
BssECI CCNNGG 6 cut(s) 9, 27, 130, 406, 711, 929
BssMI GATC 1 cut(s) 225
BssNAI GTATAC 1 cut(s) 137
BssT1I CCWWGG 3 cut(s) 130, 406, 711
Bst1107I GTATAC 1 cut(s) 137
Bst2UI CCWGG 1 cut(s) 29
Bst4CI ACNGT 2 cut(s) 779, 933
Bst6I CTCTTC 3 cut(s) 400, 641, 783
BstAPI GCANNNNNTGC 2 cut(s) 179, 188
BstBI TTCGAA 1 cut(s) 915
BstC8I GCNNGC 3 cut(s) 21, 118, 193
BstDSI CCRYGG 1 cut(s) 929
BstENI CCTNNNNNAGG 1 cut(s) 710
BstH2I RGCGCY 1 cut(s) 929
BstHHI GCGC 1 cut(s) 928
BstKTI GATC 1 cut(s) 228
BstMBI GATC 1 cut(s) 225
BstMCI CGRYCG 1 cut(s) 935
BstMWI GCNNNNNNNGC 9 cut(s) 20, 113, 150, 167, 179, 188, 584, 593, 934
BstNI CCWGG 1 cut(s) 29
BstSCI CCNGG 3 cut(s) 8, 9, 27
BstSFI CTRYAG 2 cut(s) 576, 597
BstV1I GCAGC 8 cut(s) 182, 518, 562, 583, 590, 616, 811, 814
BstZ17I GTATAC 1 cut(s) 137
BsuRI GGCC 1 cut(s) 144
BtgI CCRYGG 1 cut(s) 929
BtsIMutI CAGTG 1 cut(s) 227
Cac8I GCNNGC 3 cut(s) 21, 118, 193
CfoI GCGC 1 cut(s) 928
Cfr13I GGNCC 1 cut(s) 143
Cfr9I CCCGGG 1 cut(s) 9
CseI GACGC 1 cut(s) 12
Csp6I GTAC 3 cut(s) 468, 660, 796
CspCI CAANNNNNGTGG 2 cut(s) 203, 238
CviAII CATG 5 cut(s) 140, 211, 280, 626, 888
CviQI GTAC 3 cut(s) 468, 660, 796
DpnI GATC 1 cut(s) 227
DpnII GATC 1 cut(s) 225
Eam1104I CTCTTC 3 cut(s) 400, 641, 783
EarI CTCTTC 3 cut(s) 400, 641, 783
Eco130I CCWWGG 3 cut(s) 130, 406, 711
Eco32I GATATC 1 cut(s) 865
Eco88I CYCGRG 1 cut(s) 9
EcoNI CCTNNNNNAGG 1 cut(s) 710
EcoRII CCWGG 1 cut(s) 27
EcoRV GATATC 1 cut(s) 865
EcoT14I CCWWGG 3 cut(s) 130, 406, 711
ErhI CCWWGG 3 cut(s) 130, 406, 711
FaeI CATG 5 cut(s) 143, 214, 283, 629, 891
FaqI GGGAC 2 cut(s) 10, 742
FatI CATG 5 cut(s) 139, 210, 279, 625, 887
FblI GTMKAC 1 cut(s) 136
Fnu4HI GCNGC 8 cut(s) 171, 532, 576, 579, 597, 605, 825, 828
Fsp4HI GCNGC 8 cut(s) 171, 532, 576, 579, 597, 605, 825, 828
FspBI CTAG 4 cut(s) 266, 611, 657, 869
GlaI GCGC 1 cut(s) 927
GluI GCNGC 8 cut(s) 171, 532, 576, 579, 597, 605, 825, 828
GsuI CTGGAG 1 cut(s) 502
HaeII RGCGCY 1 cut(s) 929
HaeIII GGCC 1 cut(s) 144
HapII CCGG 2 cut(s) 10, 901
HgaI GACGC 1 cut(s) 12
HhaI GCGC 1 cut(s) 928
Hin1II CATG 5 cut(s) 143, 214, 283, 629, 891
Hin6I GCGC 1 cut(s) 926
HinP1I GCGC 1 cut(s) 926
HinfI GANTC 3 cut(s) 5, 32, 614
HpaII CCGG 2 cut(s) 10, 901
HphI GGTGA 1 cut(s) 872
Hpy166II GTNNAC 1 cut(s) 137
Hpy188III TCNNGA 1 cut(s) 611
Hpy8I GTNNAC 1 cut(s) 137
HpyAV CCTTC 5 cut(s) 502, 679, 719, 740, 911
HpyCH4III ACNGT 2 cut(s) 779, 933
HpyCH4V TGCA 7 cut(s) 76, 120, 182, 214, 534, 578, 599
HpyF10VI GCNNNNNNNGC 9 cut(s) 20, 113, 150, 167, 179, 188, 584, 593, 934
Hsp92II CATG 5 cut(s) 143, 214, 283, 629, 891
HspAI GCGC 1 cut(s) 926
Kzo9I GATC 1 cut(s) 225
LmnI GCTCC 1 cut(s) 593
LpnPI CCDG 9 cut(s) 14, 23, 41, 130, 205, 466, 541, 842, 914
Lsp1109I GCAGC 8 cut(s) 182, 518, 562, 583, 590, 616, 811, 814
LweI GCATC 3 cut(s) 318, 438, 619
MaeI CTAG 4 cut(s) 266, 611, 657, 869
MaeIII GTNAC 1 cut(s) 692
MalI GATC 1 cut(s) 227
MboI GATC 1 cut(s) 225
MboII GAAGA 6 cut(s) 199, 387, 581, 658, 800, 821
MluCI AATT 3 cut(s) 176, 365, 454
MnlI CCTC 8 cut(s) 309, 365, 403, 495, 628, 678, 839, 897
MseI TTAA 3 cut(s) 318, 837, 958
MslI CAYNNNNRTG 3 cut(s) 81, 98, 446
MspA1I CMGCKG 1 cut(s) 531
MspI CCGG 2 cut(s) 10, 901
MspR9I CCNGG 3 cut(s) 10, 11, 29
MvaI CCWGG 1 cut(s) 29
MwoI GCNNNNNNNGC 9 cut(s) 20, 113, 150, 167, 179, 188, 584, 593, 934
NciI CCSGG 2 cut(s) 10, 11
NdeII GATC 1 cut(s) 225
NlaIII CATG 5 cut(s) 143, 214, 283, 629, 891
NspV TTCGAA 1 cut(s) 915
OliI CACNNNNGTG 1 cut(s) 81
PfeI GAWTC 3 cut(s) 5, 32, 614
PflFI GACNNNGTC 1 cut(s) 335
PflMI CCANNNNNTGG 1 cut(s) 671
PkrI GCNGC 8 cut(s) 172, 533, 577, 580, 598, 606, 826, 829
Psp6I CCWGG 1 cut(s) 27
PspGI CCWGG 1 cut(s) 27
PspPI GGNCC 1 cut(s) 143
PstI CTGCAG 2 cut(s) 580, 601
PsyI GACNNNGTC 1 cut(s) 335
PvuII CAGCTG 1 cut(s) 531
RsaI GTAC 3 cut(s) 469, 661, 797
RsaNI GTAC 3 cut(s) 468, 660, 796
RseI CAYNNNNRTG 3 cut(s) 81, 98, 446
SaqAI TTAA 3 cut(s) 318, 837, 958
SatI GCNGC 8 cut(s) 171, 532, 576, 579, 597, 605, 825, 828
Sau3AI GATC 1 cut(s) 225
Sau96I GGNCC 1 cut(s) 143
ScaI AGTACT 2 cut(s) 661, 797
ScrFI CCNGG 3 cut(s) 10, 11, 29
SfaNI GCATC 3 cut(s) 318, 438, 619
SfcI CTRYAG 2 cut(s) 576, 597
SfuI TTCGAA 1 cut(s) 915
SmaI CCCGGG 1 cut(s) 11
SmiMI CAYNNNNRTG 3 cut(s) 81, 98, 446
Sse9I AATT 3 cut(s) 176, 365, 454
SsiI CCGC 1 cut(s) 86
SspMI CTAG 4 cut(s) 266, 611, 657, 869
StyD4I CCNGG 3 cut(s) 8, 9, 27
StyI CCWWGG 3 cut(s) 130, 406, 711
TaaI ACNGT 2 cut(s) 779, 933
TaqI TCGA 2 cut(s) 259, 915
TasI AATT 3 cut(s) 176, 365, 454
TatI WGTACW 2 cut(s) 659, 795
TfiI GAWTC 3 cut(s) 5, 32, 614
Tru1I TTAA 3 cut(s) 318, 837, 958
Tru9I TTAA 3 cut(s) 318, 837, 958
TscAI CASTG 1 cut(s) 227
TseI GCWGC 8 cut(s) 170, 531, 575, 578, 596, 604, 824, 827
TspDTI ATGAA 7 cut(s) 199, 387, 395, 582, 659, 698, 911
TspMI CCCGGG 1 cut(s) 9
TspRI CASTG 1 cut(s) 227
Tth111I GACNNNGTC 1 cut(s) 335
Van91I CCANNNNNTGG 1 cut(s) 671
XagI CCTNNNNNAGG 1 cut(s) 710
XapI RAATTY 2 cut(s) 176, 454
XbaI TCTAGA 1 cut(s) 610
XcmI CCANNNNNNNNNTGG 1 cut(s) 137
XmaI CCCGGG 1 cut(s) 9
XmiI GTMKAC 1 cut(s) 136
XspI CTAG 4 cut(s) 266, 611, 657, 869
ZrmI AGTACT 2 cut(s) 661, 797
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.