FvH4_4g24090

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0013386
Physical Location & Seq
Reverse (-)
26382087 .. 26383795
1709 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g24090.t1

Sequence Viewer

Length: 1035 bp
ATGGATTCCCGGGCTTCGCTTGCGTCCCAGGAATCAACAAACCAAACCAAGAAGATGAGTAGGAAACGCCCACTGCGCACTTGTGCGGTTTCTGTTTTGATGATAGCTAACCAAGCCTGCACCAGAGTTCAAGGTATACATGGACCTTTAGGCACAGTGGCAAAGGTGGTAGCAAAATTTGCAACATTTGCCAGCCCTATTATTATTTTGATGCGATATCAGTGGATCATAATGGTACTCCTCTCATTTGTTGATTATATAATACTAGCCGTTGAAAATGTGATTGAGAGACTTTACCCTCCATCAAACATTGTGTTCAACAAGATTGATGACTTGGTTCAAGTCGTAGAAACCCTCCCGGAAAAATTAGATCAAGCAATGAACAAGCTCCCCTCTTCTATCCATTCTATCCACCCAGGTTCGGTTTTGGATTGGGGATTGTTTCGTGCCATTACGATGCTGAATTTTGTTAGTAGTACACTGACTGGCTGGAGAATGTTAAAGGGTGCAAGGGAGAAGGAGATTGTAGTTGATACCAGCTGCAGGAATAATAATAATAACAATAGTCATCGTCATAATACTAATGAAGCAGATGGGGCAAAAGCTAATGGAGCTACGGAGCAGCTTATAGATTCCTCATCAAAGCATGATGCTAAAGGTGGTGAGGCTAATAATAATAAGAATATGAAGAGTAATCGTAGTACTCCTAGTACTACTCCTCCTCTTGGTACTCCACCTCATGGTGCTGTTATGAAGGGTAGTTACAAGGAAGCTCTAACCAAGGGGAAAAAAGAAAGGAGTGAAAGTAAAAAAGAAGAAAACAAGTACAAAAAGAACGGCAAAGAAAGTAAAACAAAAAGAGAGAAGCACCACAGCAAGAAAGAAGAGAAATCTGCTGCTGCTGATGATGTTAACAATCGAGGCAATAGTGAGGATGATGAAATCCTAGACTTGTTTGACTCGGCATGGCTAATGAACCGGAGGAGAAATTTTGGAAAAGCGCCACGGTCGGTATCATTTCACGGGGTTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

345

Amino Acids

38.34

Weight (kDa)

9.67

Isoelectric Point (pI)

44.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013386)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67540 AT1G67540
fragaria_vesca FvH4_4g24090
malus_domestica MD13G1115600.v1.1 MD16G1115600.v1.1
prunus_persica Prupe.1G231500_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0430861
rosa_laevigata RLG00000006945
rosa_multiflora Rmu_sc0002620.1_g000003 Rmu_sc0006263.1_g000006
rosa_roxburghii Rroxscaffold_5G00372530
rosa_rugosa Rorug04G0246000.1
rosa_samantha Rh4AG302300 Rh4BG310400 Rh4CG326700 Rh4CG326800 Rh4DG306500
rosa_wichuraiana Rw4G026270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 77
AccB7I CCANNNNNTGG 1 cut(s) 740
AccI GTMKAC 1 cut(s) 136
AciI CCGC 1 cut(s) 86
AclWI GGATC 1 cut(s) 233
AcsI RAATTY 3 cut(s) 176, 463, 988
AfaI GTAC 6 cut(s) 237, 478, 703, 712, 730, 827
AfiI CCNNNNNNNGG 4 cut(s) 421, 543, 725, 740
AgsI TTSAA 4 cut(s) 131, 275, 319, 341
AjnI CCWGG 2 cut(s) 27, 415
AluBI AGCT 7 cut(s) 107, 388, 540, 605, 614, 625, 773
AluI AGCT 7 cut(s) 107, 388, 540, 605, 614, 625, 773
Alw26I GTCTC 1 cut(s) 283
AlwI GGATC 1 cut(s) 233
Ama87I CYCGRG 1 cut(s) 9
ApeKI GCWGC 4 cut(s) 540, 622, 896, 899
ApoI RAATTY 3 cut(s) 176, 463, 988
AspLEI GCGC 2 cut(s) 78, 1003
AspS9I GGNCC 1 cut(s) 143
AsuC2I CCSGG 3 cut(s) 10, 11, 359
AsuHPI GGTGA 1 cut(s) 674
AvaI CYCGRG 1 cut(s) 9
AvaII GGWCC 1 cut(s) 143
BarI GAAGNNNNNNTAC 2 cut(s) 746, 778
BbvI GCAGC 4 cut(s) 527, 634, 883, 886
BccI CCATC 2 cut(s) 310, 587
BceAI ACGGC 2 cut(s) 254, 853
BciT130I CCWGG 2 cut(s) 29, 417
BcnI CCSGG 3 cut(s) 10, 11, 359
BcoDI GTCTC 1 cut(s) 283
BfaI CTAG 3 cut(s) 266, 708, 947
BfmI CTRYAG 1 cut(s) 541
BfoI RGCGCY 1 cut(s) 1004
BisI GCNGC 4 cut(s) 541, 623, 897, 900
BlsI GCNGC 4 cut(s) 542, 624, 898, 901
BmcAI AGTACT 2 cut(s) 703, 712
Bme1390I CCNGG 5 cut(s) 10, 11, 29, 359, 417
Bme18I GGWCC 1 cut(s) 143
BmeT110I CYCGRG 1 cut(s) 9
BmgT120I GGNCC 1 cut(s) 143
BmrFI CCNGG 5 cut(s) 10, 11, 29, 359, 417
BmsI GCATC 3 cut(s) 201, 447, 640
BpmI CTGGAG 1 cut(s) 511
BpuMI CCSGG 3 cut(s) 10, 11, 359
BsaJI CCNNGG 5 cut(s) 9, 27, 415, 780, 1004
BsaWI WCCGGW 1 cut(s) 978
BsaXI ACNNNNNCTCC 4 cut(s) 703, 733, 790, 820
Bsc4I CCNNNNNNNGG 4 cut(s) 421, 543, 725, 740
Bse1I ACTGG 1 cut(s) 490
Bse3DI GCAATG 1 cut(s) 384
BseBI CCWGG 2 cut(s) 29, 417
BseDI CCNNGG 5 cut(s) 9, 27, 415, 780, 1004
BseGI GGATG 1 cut(s) 940
BseLI CCNNNNNNNGG 4 cut(s) 421, 543, 725, 740
BseMI GCAATG 1 cut(s) 384
BseNI ACTGG 1 cut(s) 490
BseRI GAGGAG 4 cut(s) 230, 708, 711, 997
BseXI GCAGC 4 cut(s) 527, 634, 883, 886
BsgI GTGCAG 1 cut(s) 103
Bsh1285I CGRYCG 1 cut(s) 1010
BsiEI CGRYCG 1 cut(s) 1010
BsiHKCI CYCGRG 1 cut(s) 9
BsiSI CCGG 3 cut(s) 10, 359, 979
BslFI GGGAC 1 cut(s) 10
BslI CCNNNNNNNGG 4 cut(s) 421, 543, 725, 740
BsmAI GTCTC 1 cut(s) 283
BsmFI GGGAC 1 cut(s) 10
BsoBI CYCGRG 1 cut(s) 9
Bsp143I GATC 2 cut(s) 225, 370
BspACI CCGC 1 cut(s) 86
BspMAI CTGCAG 1 cut(s) 545
BspPI GGATC 1 cut(s) 233
BsrDI GCAATG 1 cut(s) 384
BsrI ACTGG 1 cut(s) 490
BssECI CCNNGG 5 cut(s) 9, 27, 415, 780, 1004
BssMI GATC 2 cut(s) 225, 370
BssNAI GTATAC 1 cut(s) 137
BssT1I CCWWGG 1 cut(s) 780
Bst1107I GTATAC 1 cut(s) 137
Bst2UI CCWGG 2 cut(s) 29, 417
Bst4CI ACNGT 2 cut(s) 157, 1008
Bst6I CTCTTC 3 cut(s) 400, 683, 879
BstAPI GCANNNNNTGC 2 cut(s) 179, 188
BstC8I GCNNGC 3 cut(s) 21, 118, 193
BstDSI CCRYGG 1 cut(s) 1004
BstF5I GGATG 1 cut(s) 940
BstH2I RGCGCY 1 cut(s) 1004
BstHHI GCGC 2 cut(s) 78, 1003
BstKTI GATC 2 cut(s) 228, 373
BstMAI GTCTC 1 cut(s) 283
BstMBI GATC 2 cut(s) 225, 370
BstMCI CGRYCG 1 cut(s) 1010
BstMWI GCNNNNNNNGC 7 cut(s) 20, 75, 113, 179, 188, 596, 611
BstNI CCWGG 2 cut(s) 29, 417
BstSCI CCNGG 5 cut(s) 8, 9, 27, 357, 415
BstSFI CTRYAG 1 cut(s) 541
BstV1I GCAGC 4 cut(s) 527, 634, 883, 886
BstZ17I GTATAC 1 cut(s) 137
BtgI CCRYGG 1 cut(s) 1004
BtsCI GGATG 1 cut(s) 940
BtsI GCAGTG 1 cut(s) 71
BtsIMutI CAGTG 4 cut(s) 71, 162, 227, 479
Cac8I GCNNGC 3 cut(s) 21, 118, 193
CfoI GCGC 2 cut(s) 78, 1003
Cfr13I GGNCC 1 cut(s) 143
Cfr9I CCCGGG 1 cut(s) 9
CseI GACGC 1 cut(s) 12
Csp6I GTAC 6 cut(s) 236, 477, 702, 711, 729, 826
CviAII CATG 4 cut(s) 140, 647, 740, 966
CviQI GTAC 6 cut(s) 236, 477, 702, 711, 729, 826
DpnI GATC 2 cut(s) 227, 372
DpnII GATC 2 cut(s) 225, 370
Eam1104I CTCTTC 3 cut(s) 400, 683, 879
EarI CTCTTC 3 cut(s) 400, 683, 879
Eco130I CCWWGG 1 cut(s) 780
Eco32I GATATC 1 cut(s) 218
Eco47I GGWCC 1 cut(s) 143
Eco88I CYCGRG 1 cut(s) 9
EcoRII CCWGG 2 cut(s) 27, 415
EcoRV GATATC 1 cut(s) 218
EcoT14I CCWWGG 1 cut(s) 780
ErhI CCWWGG 1 cut(s) 780
FaeI CATG 4 cut(s) 143, 650, 743, 969
FaqI GGGAC 1 cut(s) 10
FatI CATG 4 cut(s) 139, 646, 739, 965
FblI GTMKAC 1 cut(s) 136
Fnu4HI GCNGC 4 cut(s) 541, 623, 897, 900
FokI GGATG 1 cut(s) 947
Fsp4HI GCNGC 4 cut(s) 541, 623, 897, 900
FspBI CTAG 3 cut(s) 266, 708, 947
FspI TGCGCA 1 cut(s) 77
GlaI GCGC 2 cut(s) 77, 1002
GluI GCNGC 4 cut(s) 541, 623, 897, 900
GsuI CTGGAG 1 cut(s) 511
HaeII RGCGCY 1 cut(s) 1004
HapII CCGG 3 cut(s) 10, 359, 979
HgaI GACGC 1 cut(s) 12
HhaI GCGC 2 cut(s) 78, 1003
Hin1II CATG 4 cut(s) 143, 650, 743, 969
Hin6I GCGC 2 cut(s) 76, 1001
HinP1I GCGC 2 cut(s) 76, 1001
HincII GTYRAC 1 cut(s) 913
HindII GTYRAC 1 cut(s) 913
HinfI GANTC 4 cut(s) 5, 32, 632, 959
HpaI GTTAAC 1 cut(s) 913
HpaII CCGG 3 cut(s) 10, 359, 979
HphI GGTGA 1 cut(s) 674
Hpy166II GTNNAC 3 cut(s) 137, 479, 913
Hpy8I GTNNAC 3 cut(s) 137, 479, 913
HpyAV CCTTC 2 cut(s) 511, 748
HpyCH4III ACNGT 2 cut(s) 157, 1008
HpyCH4V TGCA 4 cut(s) 120, 182, 509, 543
HpyF10VI GCNNNNNNNGC 7 cut(s) 20, 75, 113, 179, 188, 596, 611
Hsp92II CATG 4 cut(s) 143, 650, 743, 969
HspAI GCGC 2 cut(s) 76, 1001
KspAI GTTAAC 1 cut(s) 913
Kzo9I GATC 2 cut(s) 225, 370
LmnI GCTCC 3 cut(s) 393, 611, 619
Lsp1109I GCAGC 4 cut(s) 527, 634, 883, 886
LweI GCATC 3 cut(s) 201, 447, 640
MaeI CTAG 3 cut(s) 266, 708, 947
MaeIII GTNAC 1 cut(s) 761
MalI GATC 2 cut(s) 227, 372
MboI GATC 2 cut(s) 225, 370
MboII GAAGA 5 cut(s) 64, 387, 700, 827, 896
MluCI AATT 4 cut(s) 176, 365, 463, 988
MlyI GAGTC 1 cut(s) 953
MseI TTAA 3 cut(s) 500, 912, 1033
MslI CAYNNNNRTG 1 cut(s) 455
MspA1I CMGCKG 1 cut(s) 540
MspI CCGG 3 cut(s) 10, 359, 979
MspR9I CCNGG 5 cut(s) 10, 11, 29, 359, 417
MvaI CCWGG 2 cut(s) 29, 417
MwoI GCNNNNNNNGC 7 cut(s) 20, 75, 113, 179, 188, 596, 611
NciI CCSGG 3 cut(s) 10, 11, 359
NdeII GATC 2 cut(s) 225, 370
NlaIII CATG 4 cut(s) 143, 650, 743, 969
NmeAIII GCCGAG 1 cut(s) 941
NsbI TGCGCA 1 cut(s) 77
PfeI GAWTC 3 cut(s) 5, 32, 632
PflMI CCANNNNNTGG 1 cut(s) 740
PfoI TCCNGGA 1 cut(s) 357
PkrI GCNGC 4 cut(s) 542, 624, 898, 901
PleI GAGTC 1 cut(s) 953
PpsI GAGTC 1 cut(s) 953
Psp6I CCWGG 2 cut(s) 27, 415
PspGI CCWGG 2 cut(s) 27, 415
PspPI GGNCC 1 cut(s) 143
PstI CTGCAG 1 cut(s) 545
PvuII CAGCTG 1 cut(s) 540
RsaI GTAC 6 cut(s) 237, 478, 703, 712, 730, 827
RsaNI GTAC 6 cut(s) 236, 477, 702, 711, 729, 826
RseI CAYNNNNRTG 1 cut(s) 455
SaqAI TTAA 3 cut(s) 500, 912, 1033
SatI GCNGC 4 cut(s) 541, 623, 897, 900
Sau3AI GATC 2 cut(s) 225, 370
Sau96I GGNCC 1 cut(s) 143
ScaI AGTACT 2 cut(s) 703, 712
SchI GAGTC 1 cut(s) 953
ScrFI CCNGG 5 cut(s) 10, 11, 29, 359, 417
SfaNI GCATC 3 cut(s) 201, 447, 640
SfcI CTRYAG 1 cut(s) 541
SinI GGWCC 1 cut(s) 143
SmaI CCCGGG 1 cut(s) 11
SmiMI CAYNNNNRTG 1 cut(s) 455
Sse9I AATT 4 cut(s) 176, 365, 463, 988
SsiI CCGC 1 cut(s) 86
SspMI CTAG 3 cut(s) 266, 708, 947
StyD4I CCNGG 5 cut(s) 8, 9, 27, 357, 415
StyI CCWWGG 1 cut(s) 780
TaaI ACNGT 2 cut(s) 157, 1008
TaqI TCGA 1 cut(s) 919
TasI AATT 4 cut(s) 176, 365, 463, 988
TatI WGTACW 4 cut(s) 476, 701, 710, 825
TfiI GAWTC 3 cut(s) 5, 32, 632
Tru1I TTAA 3 cut(s) 500, 912, 1033
Tru9I TTAA 3 cut(s) 500, 912, 1033
TscAI CASTG 4 cut(s) 78, 162, 227, 486
TseI GCWGC 4 cut(s) 540, 622, 896, 899
TspDTI ATGAA 6 cut(s) 395, 600, 701, 767, 954, 989
TspGWI ACGGA 1 cut(s) 632
TspMI CCCGGG 1 cut(s) 9
TspRI CASTG 4 cut(s) 78, 162, 227, 486
Van91I CCANNNNNTGG 1 cut(s) 740
VpaK11BI GGWCC 1 cut(s) 143
XapI RAATTY 3 cut(s) 176, 463, 988
XmaI CCCGGG 1 cut(s) 9
XmiI GTMKAC 1 cut(s) 136
XspI CTAG 3 cut(s) 266, 708, 947
ZrmI AGTACT 2 cut(s) 703, 712
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.