Rroxscaffold_5G00372530

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0013386
Physical Location & Seq
Reverse (-)
53968659 .. 53969579
921 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00372530.1

Sequence Viewer

Length: 921 bp
ATGAGTAGGAAACGCCCATTGCACACTTGTGCGGTTTCCGTTTTAGTGATAGCTGACAAAGCCTGTACCAAAGTCCAAGGTATACATGGCCCTTTAGGCGTAATGGCAAAGGTGGCAGCAAAATTTGCAACATTTGCCAGCCCCATTATTATCTTCATGCAATATCAGTGGATCTTAATGACAGTCCTCTCATTTATTGATGGTCGAATACTAGCTGTTGAAAACATGATAGAGAGACTTTACCCTCCATCAAGCATCGTGTTTAACAAGATTGATGACTTTATCCAAGTCGCAGAAACCCTCCCCGAAAAATTAGATGAAGCAATGAATAAACTCCCCTCTTCTATCCATTCTATCCACCAAGGTTCGGTTTTAGATTGGGGATTGGTTCGTGCCATTACGATTCTAAATTTTGTTAGTGGTACGCTAACTTACTGGAGAATGTCAAAGGGTGCGAGGGAGAAGGAGATTGTAGTTGATACCAGCTGCAATGATAATAATAATCATCATCACAATACTAAAGAAGAAGCTGCAGCTAAAGCTAATGGAGCTGCAGAGCAGCTTATAGATTCCTCAAAGCATGATGCTAATAATAATATGAAGAGTAATCCTAGTACTCCACCTCTTGGTGCTGTTATGAAGGGTAGTTACAAGGAAGCCCTAACCAAGGGTAAAAAAGAAGGGACTGAAAGTAAAAAAGAAGGAAACAAGCAGTATAAAACGAACGGCATACACAGTAAAACAGAAGAGAAGTACTACAACAAGGAAGAAGTGAAGTCTGCTGCTGCTGATGTTAAGAATGGAGGCAATGGTCACGGTGATATCCTAGACTTGTTTGACACGGCATGGCTAATGAACCGGAGGAGAAGTTTCGAAGGAAAAGCGCCACGGTCACTGTCATTTCACGGGGTTATTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

306

Amino Acids

33.83

Weight (kDa)

9.13

Isoelectric Point (pI)

39.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013386)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67540 AT1G67540
fragaria_vesca FvH4_4g24090
malus_domestica MD13G1115600.v1.1 MD16G1115600.v1.1
prunus_persica Prupe.1G231500_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0430861
rosa_laevigata RLG00000006945
rosa_multiflora Rmu_sc0002620.1_g000003 Rmu_sc0006263.1_g000006
rosa_roxburghii Rroxscaffold_5G00372530
rosa_rugosa Rorug04G0246000.1
rosa_samantha Rh4AG302300 Rh4BG310400 Rh4CG326700 Rh4CG326800 Rh4DG306500
rosa_wichuraiana Rw4G026270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 626
AccI GTMKAC 1 cut(s) 82
AciI CCGC 1 cut(s) 32
AclWI GGATC 1 cut(s) 179
AcsI RAATTY 2 cut(s) 122, 409
AfaI GTAC 4 cut(s) 67, 424, 616, 755
AfiI CCNNNNNNNGG 3 cut(s) 367, 626, 667
AgsI TTSAA 1 cut(s) 221
AleI CACNNNNGTG 1 cut(s) 27
AluBI AGCT 8 cut(s) 53, 215, 486, 530, 536, 542, 551, 562
AluI AGCT 8 cut(s) 53, 215, 486, 530, 536, 542, 551, 562
Alw26I GTCTC 1 cut(s) 229
AlwI GGATC 1 cut(s) 179
AoxI GGCC 1 cut(s) 88
ApeKI GCWGC 8 cut(s) 116, 486, 530, 533, 551, 559, 782, 785
ApoI RAATTY 2 cut(s) 122, 409
AspLEI GCGC 1 cut(s) 886
AspS9I GGNCC 1 cut(s) 89
AsuHPI GGTGA 1 cut(s) 830
AsuII TTCGAA 1 cut(s) 873
BarI GAAGNNNNNNTAC 2 cut(s) 632, 664
BbvI GCAGC 8 cut(s) 128, 473, 517, 538, 545, 571, 769, 772
BccI CCATC 2 cut(s) 194, 256
BceAI ACGGC 2 cut(s) 742, 858
BcoDI GTCTC 1 cut(s) 229
BfaI CTAG 3 cut(s) 212, 612, 827
BfmI CTRYAG 2 cut(s) 531, 552
BfoI RGCGCY 1 cut(s) 887
BglI GCCNNNNNGGC 1 cut(s) 96
BisI GCNGC 8 cut(s) 117, 487, 531, 534, 552, 560, 783, 786
BlsI GCNGC 8 cut(s) 118, 488, 532, 535, 553, 561, 784, 787
BmcAI AGTACT 2 cut(s) 616, 755
BmgT120I GGNCC 1 cut(s) 89
BmsI GCATC 2 cut(s) 264, 574
BpmI CTGGAG 1 cut(s) 457
Bpu14I TTCGAA 1 cut(s) 873
BsaJI CCNNGG 4 cut(s) 76, 361, 666, 887
BsaWI WCCGGW 1 cut(s) 858
BsaXI ACNNNNNCTCC 2 cut(s) 853, 883
Bsc4I CCNNNNNNNGG 3 cut(s) 367, 626, 667
Bse1I ACTGG 1 cut(s) 440
Bse3DI GCAATG 4 cut(s) 17, 330, 496, 814
BseDI CCNNGG 4 cut(s) 76, 361, 666, 887
BseLI CCNNNNNNNGG 3 cut(s) 367, 626, 667
BseMI GCAATG 4 cut(s) 17, 330, 496, 814
BseNI ACTGG 1 cut(s) 440
BseRI GAGGAG 1 cut(s) 877
BseXI GCAGC 8 cut(s) 128, 473, 517, 538, 545, 571, 769, 772
BshFI GGCC 1 cut(s) 90
BsiSI CCGG 1 cut(s) 859
BslFI GGGAC 1 cut(s) 697
BslI CCNNNNNNNGG 3 cut(s) 367, 626, 667
BsmAI GTCTC 1 cut(s) 229
BsmFI GGGAC 1 cut(s) 697
BsnI GGCC 1 cut(s) 90
Bsp119I TTCGAA 1 cut(s) 873
Bsp143I GATC 1 cut(s) 171
BspACI CCGC 1 cut(s) 32
BspANI GGCC 1 cut(s) 90
BspMAI CTGCAG 2 cut(s) 535, 556
BspPI GGATC 1 cut(s) 179
BspT104I TTCGAA 1 cut(s) 873
BsrDI GCAATG 4 cut(s) 17, 330, 496, 814
BsrI ACTGG 1 cut(s) 440
BssECI CCNNGG 4 cut(s) 76, 361, 666, 887
BssMI GATC 1 cut(s) 171
BssNAI GTATAC 1 cut(s) 83
BssT1I CCWWGG 3 cut(s) 76, 361, 666
Bst1107I GTATAC 1 cut(s) 83
Bst4CI ACNGT 5 cut(s) 184, 737, 818, 891, 897
Bst6I CTCTTC 3 cut(s) 346, 596, 741
BstAPI GCANNNNNTGC 2 cut(s) 125, 134
BstBI TTCGAA 1 cut(s) 873
BstC8I GCNNGC 1 cut(s) 139
BstDSI CCRYGG 1 cut(s) 887
BstENI CCTNNNNNAGG 1 cut(s) 665
BstH2I RGCGCY 1 cut(s) 887
BstHHI GCGC 1 cut(s) 886
BstKTI GATC 1 cut(s) 174
BstMAI GTCTC 1 cut(s) 229
BstMBI GATC 1 cut(s) 171
BstMWI GCNNNNNNNGC 7 cut(s) 59, 96, 113, 125, 134, 539, 548
BstSFI CTRYAG 2 cut(s) 531, 552
BstV1I GCAGC 8 cut(s) 128, 473, 517, 538, 545, 571, 769, 772
BstX2I RGATCY 1 cut(s) 171
BstYI RGATCY 1 cut(s) 171
BstZ17I GTATAC 1 cut(s) 83
BsuRI GGCC 1 cut(s) 90
BtgI CCRYGG 1 cut(s) 887
BtsIMutI CAGTG 2 cut(s) 173, 893
Cac8I GCNNGC 1 cut(s) 139
CfoI GCGC 1 cut(s) 886
Cfr13I GGNCC 1 cut(s) 89
Csp6I GTAC 4 cut(s) 66, 423, 615, 754
CspCI CAANNNNNGTGG 2 cut(s) 149, 184
CviAII CATG 5 cut(s) 86, 157, 226, 581, 846
CviQI GTAC 4 cut(s) 66, 423, 615, 754
DpnI GATC 1 cut(s) 173
DpnII GATC 1 cut(s) 171
Eam1104I CTCTTC 3 cut(s) 346, 596, 741
EarI CTCTTC 3 cut(s) 346, 596, 741
Eco130I CCWWGG 3 cut(s) 76, 361, 666
Eco32I GATATC 1 cut(s) 823
EcoNI CCTNNNNNAGG 1 cut(s) 665
EcoRV GATATC 1 cut(s) 823
EcoT14I CCWWGG 3 cut(s) 76, 361, 666
ErhI CCWWGG 3 cut(s) 76, 361, 666
FaeI CATG 5 cut(s) 89, 160, 229, 584, 849
FaqI GGGAC 1 cut(s) 697
FatI CATG 5 cut(s) 85, 156, 225, 580, 845
FblI GTMKAC 1 cut(s) 82
Fnu4HI GCNGC 8 cut(s) 117, 487, 531, 534, 552, 560, 783, 786
Fsp4HI GCNGC 8 cut(s) 117, 487, 531, 534, 552, 560, 783, 786
FspBI CTAG 3 cut(s) 212, 612, 827
GlaI GCGC 1 cut(s) 885
GluI GCNGC 8 cut(s) 117, 487, 531, 534, 552, 560, 783, 786
GsuI CTGGAG 1 cut(s) 457
HaeII RGCGCY 1 cut(s) 887
HaeIII GGCC 1 cut(s) 90
HapII CCGG 1 cut(s) 859
HhaI GCGC 1 cut(s) 886
Hin1II CATG 5 cut(s) 89, 160, 229, 584, 849
Hin6I GCGC 1 cut(s) 884
HinP1I GCGC 1 cut(s) 884
HinfI GANTC 2 cut(s) 403, 569
HpaII CCGG 1 cut(s) 859
HphI GGTGA 1 cut(s) 830
Hpy166II GTNNAC 1 cut(s) 83
Hpy8I GTNNAC 1 cut(s) 83
HpyAV CCTTC 5 cut(s) 457, 634, 674, 695, 869
HpyCH4III ACNGT 5 cut(s) 184, 737, 818, 891, 897
HpyCH4V TGCA 6 cut(s) 22, 128, 160, 489, 533, 554
HpyF10VI GCNNNNNNNGC 7 cut(s) 59, 96, 113, 125, 134, 539, 548
Hsp92II CATG 5 cut(s) 89, 160, 229, 584, 849
HspAI GCGC 1 cut(s) 884
Kzo9I GATC 1 cut(s) 171
LmnI GCTCC 1 cut(s) 548
LpnPI CCDG 5 cut(s) 76, 151, 421, 496, 872
Lsp1109I GCAGC 8 cut(s) 128, 473, 517, 538, 545, 571, 769, 772
LweI GCATC 2 cut(s) 264, 574
MaeI CTAG 3 cut(s) 212, 612, 827
MaeIII GTNAC 3 cut(s) 647, 812, 891
MalI GATC 1 cut(s) 173
MboI GATC 1 cut(s) 171
MboII GAAGA 6 cut(s) 145, 333, 536, 613, 758, 779
MflI RGATCY 1 cut(s) 171
MluCI AATT 3 cut(s) 122, 311, 409
MnlI CCTC 9 cut(s) 197, 255, 311, 349, 450, 583, 633, 797, 855
MseI TTAA 4 cut(s) 176, 264, 795, 915
MslI CAYNNNNRTG 1 cut(s) 27
MspA1I CMGCKG 1 cut(s) 486
MspI CCGG 1 cut(s) 859
MwoI GCNNNNNNNGC 7 cut(s) 59, 96, 113, 125, 134, 539, 548
NdeII GATC 1 cut(s) 171
NlaIII CATG 5 cut(s) 89, 160, 229, 584, 849
NmuCI GTSAC 2 cut(s) 812, 891
NspV TTCGAA 1 cut(s) 873
OliI CACNNNNGTG 1 cut(s) 27
PfeI GAWTC 2 cut(s) 403, 569
PflMI CCANNNNNTGG 1 cut(s) 626
PkrI GCNGC 8 cut(s) 118, 488, 532, 535, 553, 561, 784, 787
PspPI GGNCC 1 cut(s) 89
PstI CTGCAG 2 cut(s) 535, 556
PsuI RGATCY 1 cut(s) 171
PvuII CAGCTG 1 cut(s) 486
RsaI GTAC 4 cut(s) 67, 424, 616, 755
RsaNI GTAC 4 cut(s) 66, 423, 615, 754
RseI CAYNNNNRTG 1 cut(s) 27
SaqAI TTAA 4 cut(s) 176, 264, 795, 915
SatI GCNGC 8 cut(s) 117, 487, 531, 534, 552, 560, 783, 786
Sau3AI GATC 1 cut(s) 171
Sau96I GGNCC 1 cut(s) 89
ScaI AGTACT 2 cut(s) 616, 755
SfaNI GCATC 2 cut(s) 264, 574
SfcI CTRYAG 2 cut(s) 531, 552
SfuI TTCGAA 1 cut(s) 873
SmiMI CAYNNNNRTG 1 cut(s) 27
Sse9I AATT 3 cut(s) 122, 311, 409
SsiI CCGC 1 cut(s) 32
SspMI CTAG 3 cut(s) 212, 612, 827
StyI CCWWGG 3 cut(s) 76, 361, 666
TaaI ACNGT 5 cut(s) 184, 737, 818, 891, 897
TaqI TCGA 2 cut(s) 205, 873
TasI AATT 3 cut(s) 122, 311, 409
TatI WGTACW 2 cut(s) 614, 753
TfiI GAWTC 2 cut(s) 403, 569
Tru1I TTAA 4 cut(s) 176, 264, 795, 915
Tru9I TTAA 4 cut(s) 176, 264, 795, 915
TscAI CASTG 2 cut(s) 173, 900
TseFI GTSAC 2 cut(s) 812, 891
TseI GCWGC 8 cut(s) 116, 486, 530, 533, 551, 559, 782, 785
Tsp45I GTSAC 2 cut(s) 812, 891
TspDTI ATGAA 6 cut(s) 145, 333, 341, 614, 653, 869
TspGWI ACGGA 1 cut(s) 28
TspRI CASTG 2 cut(s) 173, 900
Van91I CCANNNNNTGG 1 cut(s) 626
XagI CCTNNNNNAGG 1 cut(s) 665
XapI RAATTY 2 cut(s) 122, 409
XcmI CCANNNNNNNNNTGG 1 cut(s) 83
XmiI GTMKAC 1 cut(s) 82
XspI CTAG 3 cut(s) 212, 612, 827
ZrmI AGTACT 2 cut(s) 616, 755
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.