Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007590

Physical Location & Seq

Genomic Coordinates Reverse (-)

25420646 .. 25423731

Gene Structure 3086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G67800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGGGAGGAAGTAGCTCTAAAGAGTCACCTAGAGGAGGTGGAAGTGGTCGTAGGTATGAACGTAGTGTGTCTGGGAGCTCATCTTATTCGTCTGCTTGGGACCAGAGCAGCTATTATCAGACACCAAACCATCCATCTGCGTCTCCTGTTTCATCCTATAATTCTGGGAGACAAACACCGAAGAATCTTGAGAGGAAGTATTCACGGATTGCTGATAACTACCGTTCCATTGATGAGGTTACCGCTGCTCTTTCACATGCCGGTTTGGAGTCCTCGAATCTCATTGTTGGTATAGATGTCACCAAGAGCAACGAGTGGACAGGGGCGAGATCATTTGGTAGGAAGAGTCTGCATTTCATTGGAACTACTCCAAACCCTTATCAACAAGCTATTTCCATCATTGGAAAGACTTTATCGGTTTTTGATGAGGATAATTTGATCCCCTGTTATGGATTTGGAGATGCTACAACTCATGATCAGGATGTCTTCAGTTTCAATCCCAATGATACATATTGTAACGGGTTTGAAGAAGTTCTCATGTGTTACAGAGAGATTGTTCCCCAGCTTCGTCTCTCAGGTCCGACATCTTTTGCACCTATCATCGAAAGGGCCATGACAATTGTGGAAGAAAGTGGTGGCCAGTACCATGTTCTTCTCATTATCGCTGATGGACAGGTGACAAGAAGTGTTGATACAGATAACGGTGGATTCAGTCCACAAGAGCAGCAGACTATTGATGCCATTGTTAGAGCAAGTGAATATCCTTTGTCTATAGTTCTTGTTGGTGTTGGAGATGGTCCCTGGGACACCATGAGACAGTTTGATGACAACATCCCCGCTCGTGCCTTTGACAATTTCCAGTTTGTGAATTTCACGGATATAATGTCAAAGAACATTGATCCAGCAAGAAAAGAGGCAGAATTCGCGCTTTCTGCCTTGATGGAGATCCCGTCTCAGTATAAAGCCACCCTCGAACTAGGCTTACTTGGACAAAGAACCGGACATTGTCCAGACAGGATTGCGCTTCCACCACCAACTTATGCTACTCAATCTATGCGCAACAGCCCAAGAACTTCCCGATCAACCAGTTTTCAAAACAAACCATATGATAATGGTGTTTCCTCTACACCACCTTCAACTACTCATAACGAGAGCCAGCAACAGTTTTGCCCCGTATGTCTAGTGAGTGCAAAGAACATGGCTTTCAATTGTGGTCATCAGACTTGCGCTGGATGTGGGGAAGACCTCCATGTGTGTCCCATTTGCCGGAGCTCAATCTCGGTTCGTATCAAGCTTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0023051 GO:0023056 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0065007 GO:1901419 GO:1901421 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Copine zf-C3HC4_3

Protein Analysis

433

Amino Acids

47.5

Weight (kDa)

5.64

Isoelectric Point (pI)

44.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Copine	PF07002	136 - 350	8.2e-76	Copine
zf-C3HC4_3	PF13920	407 - 447	1.9e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007590)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67800 AT1G67800 AT1G67800 AT1G67800 AT1G67800 AT1G67800
fragaria_vesca	FvH4_4g25370
malus_domestica	MD13G1104400.v1.1 MD16G1104500.v1.1
prunus_persica	Prupe.1G242100_v2.0.a1 Prupe.1G242100_v2.0.a1 Prupe.1G242100_v2.0.a1
pyrus_communis	pycom13g09060
rosa_chinensis	RchiOBHm_Chr4g0432661
rosa_laevigata	RLG00000006825
rosa_multiflora	Rmu_sc0009481.1_g000002
rosa_roxburghii	Rroxscaffold_5G00374120
rosa_rugosa	Rorug04G0261200 Rorug04G0261300
rosa_samantha	Rh4AG315900 Rh4BG323900 Rh4CG338900 Rh4DG319300
rosa_wichuraiana	Rw4G027480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1058
AccBSI	CCGCTC	1 cut(s)	839
AccII	CGCG	1 cut(s)	926
AciI	CCGC	2 cut(s)	243, 837
AclWI	GGATC	3 cut(s)	433, 893, 940
AcoI	YGGCCR	1 cut(s)	637
AcsI	RAATTY	2 cut(s)	868, 920
AcuI	CTGAAG	1 cut(s)	472
AfaI	GTAC	1 cut(s)	644
AfiI	CCNNNNNNNGG	3 cut(s)	35, 449, 1266
AgsI	TTSAA	5 cut(s)	496, 527, 1094, 1137, 1207
AjnI	CCWGG	1 cut(s)	800
AluBI	AGCT	7 cut(s)	15, 78, 111, 389, 565, 1272, 1294
AluI	AGCT	7 cut(s)	15, 78, 111, 389, 565, 1272, 1294
Alw21I	GWGCWC	2 cut(s)	80, 1274
Alw26I	GTCTC	5 cut(s)	147, 163, 575, 808, 957
AlwI	GGATC	3 cut(s)	433, 893, 940
AoxI	GGCC	2 cut(s)	609, 637
ApeKI	GCWGC	3 cut(s)	108, 245, 724
ApoI	RAATTY	2 cut(s)	868, 920
Asp700I	GAANNNNTTC	1 cut(s)	531
AspLEI	GCGC	4 cut(s)	928, 1024, 1059, 1229
AspS9I	GGNCC	4 cut(s)	100, 578, 609, 797
AsuHPI	GGTGA	3 cut(s)	18, 292, 688
AvaII	GGWCC	3 cut(s)	100, 578, 797
BalI	TGGCCA	1 cut(s)	639
BanII	GRGCYC	2 cut(s)	80, 1274
BarI	GAAGNNNNNNTAC	2 cut(s)	676, 708
BauI	CACGAG	1 cut(s)	840
BbsI	GAAGAC	2 cut(s)	478, 1248
Bbv12I	GWGCWC	2 cut(s)	80, 1274
BbvI	GCAGC	3 cut(s)	120, 232, 736
BccI	CCATC	6 cut(s)	138, 142, 404, 662, 788, 934
BciT130I	CCWGG	1 cut(s)	802
BclI	TGATCA	1 cut(s)	475
BcoDI	GTCTC	5 cut(s)	147, 163, 575, 808, 957
BfaI	CTAG	3 cut(s)	30, 977, 1181
BfmI	CTRYAG	1 cut(s)	771
BisI	GCNGC	3 cut(s)	109, 246, 725
BlsI	GCNGC	3 cut(s)	110, 247, 726
Bme1390I	CCNGG	1 cut(s)	802
Bme18I	GGWCC	3 cut(s)	100, 578, 797
BmgT120I	GGNCC	4 cut(s)	100, 578, 609, 797
BmiI	GGNNCC	2 cut(s)	101, 799
BmrFI	CCNGG	1 cut(s)	802
BmsI	GCATC	2 cut(s)	451, 727
BpiI	GAAGAC	2 cut(s)	478, 1248
BpuEI	CTTGAG	1 cut(s)	209
BsaBI	GATNNNNATC	1 cut(s)	944
BsaJI	CCNNGG	2 cut(s)	800, 801
BsaWI	WCCGGW	1 cut(s)	998
BsaXI	ACNNNNNCTCC	2 cut(s)	935, 965
Bsc4I	CCNNNNNNNGG	3 cut(s)	35, 449, 1266
Bse118I	RCCGGY	1 cut(s)	260
Bse1I	ACTGG	3 cut(s)	640, 859, 1086
Bse8I	GATNNNNATC	1 cut(s)	944
BseBI	CCWGG	1 cut(s)	802
BseDI	CCNNGG	2 cut(s)	800, 801
BseGI	GGATG	5 cut(s)	130, 152, 487, 831, 1238
BseJI	GATNNNNATC	1 cut(s)	944
BseLI	CCNNNNNNNGG	3 cut(s)	35, 449, 1266
BseMII	CTCAG	2 cut(s)	588, 968
BseNI	ACTGG	3 cut(s)	640, 859, 1086
BseRI	GAGGAG	1 cut(s)	48
BseXI	GCAGC	3 cut(s)	120, 232, 736
BseYI	CCCAGC	1 cut(s)	561
Bsh1236I	CGCG	1 cut(s)	926
BshFI	GGCC	2 cut(s)	611, 639
BsiHKAI	GWGCWC	2 cut(s)	80, 1274
BsiSI	CCGG	3 cut(s)	261, 999, 1267
BslFI	GGGAC	4 cut(s)	113, 783, 818, 1242
BslI	CCNNNNNNNGG	3 cut(s)	35, 449, 1266
BsmAI	GTCTC	5 cut(s)	147, 163, 575, 808, 957
BsmBI	CGTCTC	3 cut(s)	147, 575, 957
BsmFI	GGGAC	4 cut(s)	113, 783, 818, 1242
BsnI	GGCC	2 cut(s)	611, 639
Bsp1286I	GDGCHC	2 cut(s)	80, 1274
Bsp143I	GATC	6 cut(s)	329, 438, 475, 898, 945, 1079
BspACI	CCGC	2 cut(s)	243, 837
BspANI	GGCC	2 cut(s)	611, 639
BspCNI	CTCAG	2 cut(s)	587, 967
BspFNI	CGCG	1 cut(s)	926
BspHI	TCATGA	1 cut(s)	472
BspLI	GGNNCC	2 cut(s)	101, 799
BspPI	GGATC	3 cut(s)	433, 893, 940
BsrBI	CCGCTC	1 cut(s)	839
BsrFI	RCCGGY	1 cut(s)	260
BsrI	ACTGG	3 cut(s)	640, 859, 1086
BssAI	RCCGGY	1 cut(s)	260
BssECI	CCNNGG	2 cut(s)	800, 801
BssMI	GATC	6 cut(s)	329, 438, 475, 898, 945, 1079
BssSI	CACGAG	1 cut(s)	840
Bst2BI	CACGAG	1 cut(s)	840
Bst2UI	CCWGG	1 cut(s)	802
Bst4CI	ACNGT	4 cut(s)	224, 704, 819, 1164
Bst6I	CTCTTC	1 cut(s)	338
BstC8I	GCNNGC	1 cut(s)	1157
BstDEI	CTNAG	2 cut(s)	574, 954
BstEII	GGTNACC	1 cut(s)	238
BstENI	CCTNNNNNAGG	1 cut(s)	33
BstF5I	GGATG	5 cut(s)	130, 152, 487, 831, 1238
BstFNI	CGCG	1 cut(s)	926
BstHHI	GCGC	4 cut(s)	928, 1024, 1059, 1229
BstKTI	GATC	6 cut(s)	332, 441, 478, 901, 948, 1082
BstMAI	GTCTC	5 cut(s)	147, 163, 575, 808, 957
BstMBI	GATC	6 cut(s)	329, 438, 475, 898, 945, 1079
BstMWI	GCNNNNNNNGC	2 cut(s)	923, 932
BstNI	CCWGG	1 cut(s)	802
BstNSI	RCATGY	1 cut(s)	260
BstPI	GGTNACC	1 cut(s)	238
BstSCI	CCNGG	1 cut(s)	800
BstSFI	CTRYAG	1 cut(s)	771
BstUI	CGCG	1 cut(s)	926
BstV1I	GCAGC	3 cut(s)	120, 232, 736
BstV2I	GAAGAC	2 cut(s)	478, 1248
BstX2I	RGATCY	1 cut(s)	945
BstYI	RGATCY	1 cut(s)	945
BsuRI	GGCC	2 cut(s)	611, 639
BtsCI	GGATG	5 cut(s)	130, 152, 487, 831, 1238
Cac8I	GCNNGC	1 cut(s)	1157
CciI	TCATGA	1 cut(s)	472
CfoI	GCGC	4 cut(s)	928, 1024, 1059, 1229
Cfr10I	RCCGGY	1 cut(s)	260
Cfr13I	GGNCC	4 cut(s)	100, 578, 609, 797
CseI	GACGC	1 cut(s)	129
Csp6I	GTAC	1 cut(s)	643
CviAII	CATG	8 cut(s)	257, 473, 538, 613, 647, 811, 1198, 1250
CviQI	GTAC	1 cut(s)	643
DdeI	CTNAG	2 cut(s)	574, 954
DpnI	GATC	6 cut(s)	331, 440, 477, 900, 947, 1081
DpnII	GATC	6 cut(s)	329, 438, 475, 898, 945, 1079
EaeI	YGGCCR	1 cut(s)	637
Eam1104I	CTCTTC	1 cut(s)	338
EarI	CTCTTC	1 cut(s)	338
Ecl136II	GAGCTC	2 cut(s)	78, 1272
Eco24I	GRGCYC	2 cut(s)	80, 1274
Eco47I	GGWCC	3 cut(s)	100, 578, 797
Eco53kI	GAGCTC	2 cut(s)	78, 1272
Eco57I	CTGAAG	1 cut(s)	472
Eco91I	GGTNACC	1 cut(s)	238
EcoICRI	GAGCTC	2 cut(s)	78, 1272
EcoNI	CCTNNNNNAGG	1 cut(s)	33
EcoO65I	GGTNACC	1 cut(s)	238
EcoRI	GAATTC	1 cut(s)	920
EcoRII	CCWGG	1 cut(s)	800
EcoT38I	GRGCYC	2 cut(s)	80, 1274
Esp3I	CGTCTC	3 cut(s)	147, 575, 957
FaeI	CATG	8 cut(s)	260, 476, 541, 616, 650, 814, 1201, 1253
FaqI	GGGAC	4 cut(s)	113, 783, 818, 1242
FatI	CATG	8 cut(s)	256, 472, 537, 612, 646, 810, 1197, 1249
FauI	CCCGC	1 cut(s)	844
FauNDI	CATATG	1 cut(s)	1105
FbaI	TGATCA	1 cut(s)	475
Fnu4HI	GCNGC	3 cut(s)	109, 246, 725
FokI	GGATG	5 cut(s)	117, 139, 494, 818, 1245
FriOI	GRGCYC	2 cut(s)	80, 1274
Fsp4HI	GCNGC	3 cut(s)	109, 246, 725
FspBI	CTAG	3 cut(s)	30, 977, 1181
FspI	TGCGCA	1 cut(s)	1058
GlaI	GCGC	4 cut(s)	927, 1023, 1058, 1228
GluI	GCNGC	3 cut(s)	109, 246, 725
GsaI	CCCAGC	1 cut(s)	565
HaeIII	GGCC	2 cut(s)	611, 639
HapII	CCGG	3 cut(s)	261, 999, 1267
HgaI	GACGC	1 cut(s)	129
HhaI	GCGC	4 cut(s)	928, 1024, 1059, 1229
Hin1II	CATG	8 cut(s)	260, 476, 541, 616, 650, 814, 1201, 1253
Hin6I	GCGC	4 cut(s)	926, 1022, 1057, 1227
HinP1I	GCGC	4 cut(s)	926, 1022, 1057, 1227
HindIII	AAGCTT	1 cut(s)	1292
HinfI	GANTC	6 cut(s)	23, 184, 269, 277, 346, 708
HpaII	CCGG	3 cut(s)	261, 999, 1267
HphI	GGTGA	3 cut(s)	18, 292, 688
Hpy166II	GTNNAC	2 cut(s)	318, 716
Hpy188I	TCNGA	3 cut(s)	120, 582, 1221
Hpy188III	TCNNGA	5 cut(s)	188, 473, 479, 1010, 1077
Hpy8I	GTNNAC	2 cut(s)	318, 716
HpyAV	CCTTC	1 cut(s)	1143
HpyCH4III	ACNGT	4 cut(s)	224, 704, 819, 1164
HpyCH4IV	ACGT	1 cut(s)	61
HpyCH4V	TGCA	3 cut(s)	352, 593, 1190
HpyF10VI	GCNNNNNNNGC	2 cut(s)	923, 932
HpyF3I	CTNAG	2 cut(s)	574, 954
HpySE526I	ACGT	1 cut(s)	61
Hsp92II	CATG	8 cut(s)	260, 476, 541, 616, 650, 814, 1201, 1253
HspAI	GCGC	4 cut(s)	926, 1022, 1057, 1227
Ksp22I	TGATCA	1 cut(s)	475
Kzo9I	GATC	6 cut(s)	329, 438, 475, 898, 945, 1079
LmnI	GCTCC	2 cut(s)	75, 1269
Lsp1109I	GCAGC	3 cut(s)	120, 232, 736
LweI	GCATC	2 cut(s)	451, 727
MaeI	CTAG	3 cut(s)	30, 977, 1181
MaeII	ACGT	1 cut(s)	61
MaeIII	GTNAC	6 cut(s)	24, 238, 298, 515, 542, 676
MalI	GATC	6 cut(s)	331, 440, 477, 900, 947, 1081
MbiI	CCGCTC	1 cut(s)	839
MboI	GATC	6 cut(s)	329, 438, 475, 898, 945, 1079
MboII	GAAGA	7 cut(s)	193, 355, 478, 539, 638, 644, 1253
MfeI	CAATTG	2 cut(s)	618, 1207
MflI	RGATCY	1 cut(s)	945
MhlI	GDGCHC	2 cut(s)	80, 1274
MlsI	TGGCCA	1 cut(s)	639
MluCI	AATT	7 cut(s)	160, 433, 618, 853, 868, 920, 1207
MluNI	TGGCCA	1 cut(s)	639
MlyI	GAGTC	3 cut(s)	32, 278, 355
MmeI	TCCRAC	2 cut(s)	605, 769
Mox20I	TGGCCA	1 cut(s)	639
MroXI	GAANNNNTTC	1 cut(s)	531
MscI	TGGCCA	1 cut(s)	639
MseI	TTAA	1 cut(s)	1300
Msp20I	TGGCCA	1 cut(s)	639
MspA1I	CMGCKG	1 cut(s)	245
MspI	CCGG	3 cut(s)	261, 999, 1267
MspR9I	CCNGG	1 cut(s)	802
MunI	CAATTG	2 cut(s)	618, 1207
MvaI	CCWGG	1 cut(s)	802
MvnI	CGCG	1 cut(s)	926
MwoI	GCNNNNNNNGC	2 cut(s)	923, 932
NdeI	CATATG	1 cut(s)	1105
NdeII	GATC	6 cut(s)	329, 438, 475, 898, 945, 1079
NlaIII	CATG	8 cut(s)	260, 476, 541, 616, 650, 814, 1201, 1253
NlaIV	GGNNCC	2 cut(s)	101, 799
NmuCI	GTSAC	3 cut(s)	24, 298, 676
NsbI	TGCGCA	1 cut(s)	1058
NspI	RCATGY	1 cut(s)	260
PagI	TCATGA	1 cut(s)	472
PasI	CCCWGGG	1 cut(s)	801
PdmI	GAANNNNTTC	1 cut(s)	531
PfeI	GAWTC	3 cut(s)	184, 277, 708
PflFI	GACNNNGTC	1 cut(s)	1005
PkrI	GCNGC	3 cut(s)	110, 247, 726
PleI	GAGTC	3 cut(s)	31, 277, 354
PpsI	GAGTC	3 cut(s)	31, 277, 354
Psp124BI	GAGCTC	2 cut(s)	80, 1274
Psp6I	CCWGG	1 cut(s)	800
PspEI	GGTNACC	1 cut(s)	238
PspFI	CCCAGC	1 cut(s)	561
PspGI	CCWGG	1 cut(s)	800
PspN4I	GGNNCC	2 cut(s)	101, 799
PspPI	GGNCC	4 cut(s)	100, 578, 609, 797
PsrI	GAACNNNNNNTAC	2 cut(s)	966, 998
PsuI	RGATCY	1 cut(s)	945
PsyI	GACNNNGTC	1 cut(s)	1005
RsaI	GTAC	1 cut(s)	644
RsaNI	GTAC	1 cut(s)	643
SacI	GAGCTC	2 cut(s)	80, 1274
SaqAI	TTAA	1 cut(s)	1300
SatI	GCNGC	3 cut(s)	109, 246, 725
Sau3AI	GATC	6 cut(s)	329, 438, 475, 898, 945, 1079
Sau96I	GGNCC	4 cut(s)	100, 578, 609, 797
SchI	GAGTC	3 cut(s)	32, 278, 355
ScrFI	CCNGG	1 cut(s)	802
SduI	GDGCHC	2 cut(s)	80, 1274
SfaNI	GCATC	2 cut(s)	451, 727
SfcI	CTRYAG	1 cut(s)	771
SinI	GGWCC	3 cut(s)	100, 578, 797
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
Sse9I	AATT	7 cut(s)	160, 433, 618, 853, 868, 920, 1207
SsiI	CCGC	2 cut(s)	243, 837
SspMI	CTAG	3 cut(s)	30, 977, 1181
SstI	GAGCTC	2 cut(s)	80, 1274
StyD4I	CCNGG	1 cut(s)	800
TaaI	ACNGT	4 cut(s)	224, 704, 819, 1164
TaiI	ACGT	1 cut(s)	64
TaqI	TCGA	3 cut(s)	275, 603, 972
TasI	AATT	7 cut(s)	160, 433, 618, 853, 868, 920, 1207
TfiI	GAWTC	3 cut(s)	184, 277, 708
Tru1I	TTAA	1 cut(s)	1300
Tru9I	TTAA	1 cut(s)	1300
TseFI	GTSAC	3 cut(s)	24, 298, 676
TseI	GCWGC	3 cut(s)	108, 245, 724
Tsp45I	GTSAC	3 cut(s)	24, 298, 676
TspDTI	ATGAA	3 cut(s)	72, 141, 346
TspGWI	ACGGA	2 cut(s)	220, 890
Tth111I	GACNNNGTC	1 cut(s)	1005
VpaK11BI	GGWCC	3 cut(s)	100, 578, 797
XagI	CCTNNNNNAGG	1 cut(s)	33
XapI	RAATTY	2 cut(s)	868, 920
XceI	RCATGY	1 cut(s)	260
XcmI	CCANNNNNNNNNTGG	1 cut(s)	619
XmnI	GAANNNNTTC	1 cut(s)	531
XspI	CTAG	3 cut(s)	30, 977, 1181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.