FvH4_4g25370

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
27176825 .. 27180831
4007 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g25370.t1

Sequence Viewer

Length: 1302 bp
ATGGGAGGTAGAAGCTCCAAAGAGTCGAGTCCTAGGTTTTCCCATAGCGGTTCAACTACTTCTTCTTCCTCATGGAATCAGTACCCGGAATCCGTACCATATGCTCAGCAAGGCCCGTATGTTACTACACCTCAGCATCACTATGCACCCTCCTCACAACTGCCAAAGAGGAGACTAGACAGGAGATTCTCACAGATAGCCGACGATTATCGCTCCTTGGATGAGGTTACTAATGCTCTTGCACAAGCTGGCTTAGAGTCTTCTAATCTGATTGTTGGCATTGATTTCACAAAGAGCAATGATTGGACAGGTTCAAGGTCATTTGGTCGGAAAAGCTTGCATCACATGGGAACTAGTCAAAATCCTTATGAACAAGCAATATCGATTATTGGGAAGACATTGTCCGCTTTTGATGAAGATAATCTAATTCCATGCTACGGATTTGGAGATGCATCTACACACGATCAAGATGTTTTCAGCTTCTATCCAGATGACTGCGTTTGTACTGGATTCGAGGAAGTGTTAACACGATATAGAGAAATCGTTCCAGCTCTTCGGCTTGCAGGACCTACGTCTTTTGCACCCATCATTGAGATGGCAATGACAATTGTTGAGCAAAGTGGAGGCCAATACCATGTTTTGCTGATCATTGCCGATGGTCAGGTGACGAGAAGTATTGATACACAACATGGCCAACTCAGTCCACAAGAACAAAGGACTATTAACGCAATTGTAAGAGCAAGCAACTACCCCTTGTCTATAGTACTAGTCGGGGTCGGAGATGGACCCTGGGATCTGATGAAGGAATTCGATGACAACTTACCTTCTCGCGCATTTGATAACTTGCAGTTTGTGAATTTTACAGAAATCATGTCAAAAAATGTGGATGTAAAGAGAAGGCAAACAGAATTTGCTCTTTCAGCCTTGATGGAAATACCTTCTCAGTATAAGGCCACCATAGCGCTAGACCTACTGGGAGTACGAAATGGGAATTCCCCAAACAGAATTCCTCTTCCCCCACCTGCTTCAGTCTCTTCTGTTAGAAACAACACAACACCTTATACCGGATACGGCTCAAGCAGTTTTCAGCAGCGAACAGCTCCTCATGAAACTGGATATGATGCAGGAGTCAGTTCCCCTCCTTATTCGACATATGATAATCAGGTTTGCCCCATCTGTCTTACTAATCCGAAAGACATGGCCTTCGGTTGTGGACATCAGACTTGCTGTGACTGTGGAGAATACCTCCAAGCATGCCCCATTTGCCGGAGTTCAATAGAAACTAGAATAAAACTCTTCTAG

Protein Analysis

434

Amino Acids

47.76

Weight (kDa)

5.49

Isoelectric Point (pI)

54.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Copine PF07002 112 - 325 2.6e-71 Copine
zf-C3HC4_3 PF13920 387 - 428 7.3e-08 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1030
Acc36I ACCTGC 1 cut(s) 1030
AccII CGCG 1 cut(s) 831
AciI CCGC 2 cut(s) 48, 405
AclWI GGATC 1 cut(s) 801
AcoI YGGCCR 1 cut(s) 691
AcsI RAATTY 5 cut(s) 806, 856, 908, 991, 1005
AcuI CTGAAG 1 cut(s) 1011
AfaI GTAC 5 cut(s) 83, 96, 505, 765, 981
AfeI AGCGCT 1 cut(s) 963
AfiI CCNNNNNNNGG 3 cut(s) 437, 1064, 1266
AgsI TTSAA 3 cut(s) 54, 315, 1275
AhlI ACTAGT 2 cut(s) 353, 766
AjnI CCWGG 1 cut(s) 788
AluBI AGCT 6 cut(s) 15, 248, 336, 480, 551, 1100
AluI AGCT 6 cut(s) 15, 248, 336, 480, 551, 1100
Alw26I GTCTC 2 cut(s) 166, 1036
AlwI GGATC 1 cut(s) 801
Aor51HI AGCGCT 1 cut(s) 963
AoxI GGCC 5 cut(s) 112, 625, 691, 951, 1200
ApeKI GCWGC 1 cut(s) 1090
ApoI RAATTY 5 cut(s) 806, 856, 908, 991, 1005
ArsI GACNNNNNNTTYG 2 cut(s) 1187, 1219
Asp700I GAANNNNTTC 2 cut(s) 543, 806
AspA2I CCTAGG 1 cut(s) 32
AspLEI GCGC 2 cut(s) 833, 964
AspS9I GGNCC 3 cut(s) 113, 566, 785
AsuC2I CCSGG 1 cut(s) 86
AsuHPI GGTGA 1 cut(s) 676
AvaII GGWCC 2 cut(s) 566, 785
AvrII CCTAGG 1 cut(s) 32
BalI TGGCCA 1 cut(s) 693
BarI GAAGNNNNNNTAC 2 cut(s) 664, 696
BbsI GAAGAC 2 cut(s) 252, 401
BbvCI CCTCAGC 1 cut(s) 132
BbvI GCAGC 1 cut(s) 1102
BccI CCATC 6 cut(s) 589, 593, 650, 776, 922, 1181
BceAI ACGGC 1 cut(s) 1087
BciT130I CCWGG 1 cut(s) 790
BciVI GTATCC 1 cut(s) 1061
BclI TGATCA 1 cut(s) 645
BcnI CCSGG 1 cut(s) 86
BcoDI GTCTC 2 cut(s) 166, 1036
BcuI ACTAGT 2 cut(s) 353, 766
BfaI CTAG 7 cut(s) 33, 176, 354, 767, 965, 1284, 1300
BfmI CTRYAG 1 cut(s) 759
BfoI RGCGCY 1 cut(s) 965
BfuAI ACCTGC 1 cut(s) 1030
BfuI GTATCC 1 cut(s) 1061
BisI GCNGC 1 cut(s) 1091
BlnI CCTAGG 1 cut(s) 32
BlpI GCTNAGC 1 cut(s) 105
BlsI GCNGC 1 cut(s) 1092
BmcAI AGTACT 1 cut(s) 765
Bme1390I CCNGG 2 cut(s) 86, 790
Bme18I GGWCC 2 cut(s) 566, 785
BmgT120I GGNCC 3 cut(s) 113, 566, 785
BmiI GGNNCC 1 cut(s) 787
BmrFI CCNGG 2 cut(s) 86, 790
BmrI ACTGGG 1 cut(s) 983
BmsI GCATC 5 cut(s) 145, 349, 439, 461, 1111
BmuI ACTGGG 1 cut(s) 983
BoxI GACNNNNGTC 1 cut(s) 571
BpiI GAAGAC 2 cut(s) 252, 401
BplI GAGNNNNNCTC 2 cut(s) 1230, 1262
Bpu10I CCTNAGC 1 cut(s) 132
Bpu1102I GCTNAGC 1 cut(s) 105
BpuEI CTTGAG 1 cut(s) 1060
BpuMI CCSGG 1 cut(s) 86
Bsa29I ATCGAT 1 cut(s) 383
BsaJI CCNNGG 4 cut(s) 32, 216, 788, 789
BsaWI WCCGGW 1 cut(s) 1064
Bsc4I CCNNNNNNNGG 3 cut(s) 437, 1064, 1266
Bse1I ACTGG 3 cut(s) 511, 978, 1117
Bse3DI GCAATG 3 cut(s) 304, 606, 648
BseBI CCWGG 1 cut(s) 790
BseCI ATCGAT 1 cut(s) 383
BseDI CCNNGG 4 cut(s) 32, 216, 788, 789
BseGI GGATG 2 cut(s) 226, 892
BseLI CCNNNNNNNGG 3 cut(s) 437, 1064, 1266
BseMI GCAATG 3 cut(s) 304, 606, 648
BseMII CTCAG 4 cut(s) 119, 146, 712, 956
BseNI ACTGG 3 cut(s) 511, 978, 1117
BseRI GAGGAG 3 cut(s) 142, 184, 1092
BseXI GCAGC 1 cut(s) 1102
Bsh1236I CGCG 1 cut(s) 831
BshFI GGCC 5 cut(s) 114, 627, 693, 953, 1202
BshVI ATCGAT 1 cut(s) 383
BsiSI CCGG 3 cut(s) 86, 1065, 1267
BslI CCNNNNNNNGG 3 cut(s) 437, 1064, 1266
BsmAI GTCTC 2 cut(s) 166, 1036
BsnI GGCC 5 cut(s) 114, 627, 693, 953, 1202
Bsp143I GATC 3 cut(s) 463, 645, 793
Bsp1720I GCTNAGC 1 cut(s) 105
BspACI CCGC 2 cut(s) 48, 405
BspANI GGCC 5 cut(s) 114, 627, 693, 953, 1202
BspCNI CTCAG 4 cut(s) 118, 145, 711, 955
BspDI ATCGAT 1 cut(s) 383
BspFNI CGCG 1 cut(s) 831
BspHI TCATGA 1 cut(s) 1105
BspLI GGNNCC 1 cut(s) 787
BspMI ACCTGC 1 cut(s) 1030
BspPI GGATC 1 cut(s) 801
BspQI GCTCTTC 1 cut(s) 558
BsrDI GCAATG 3 cut(s) 304, 606, 648
BsrI ACTGG 3 cut(s) 511, 978, 1117
BssECI CCNNGG 4 cut(s) 32, 216, 788, 789
BssMI GATC 3 cut(s) 463, 645, 793
BssT1I CCWWGG 2 cut(s) 32, 216
Bst2UI CCWGG 1 cut(s) 790
Bst4CI ACNGT 1 cut(s) 1235
Bst6I CTCTTC 3 cut(s) 558, 1017, 1039
BstC8I GCNNGC 5 cut(s) 250, 338, 561, 742, 1255
BstDEI CTNAG 5 cut(s) 105, 132, 253, 698, 942
BstF5I GGATG 2 cut(s) 226, 892
BstFNI CGCG 1 cut(s) 831
BstH2I RGCGCY 1 cut(s) 965
BstHHI GCGC 2 cut(s) 833, 964
BstKTI GATC 3 cut(s) 466, 648, 796
BstMAI GTCTC 2 cut(s) 166, 1036
BstMBI GATC 3 cut(s) 463, 645, 793
BstMWI GCNNNNNNNGC 3 cut(s) 920, 959, 1263
BstNI CCWGG 1 cut(s) 790
BstNSI RCATGY 1 cut(s) 1257
BstPAI GACNNNNGTC 1 cut(s) 571
BstSCI CCNGG 2 cut(s) 84, 788
BstSFI CTRYAG 1 cut(s) 759
BstUI CGCG 1 cut(s) 831
BstV1I GCAGC 1 cut(s) 1102
BstV2I GAAGAC 2 cut(s) 252, 401
BstX2I RGATCY 1 cut(s) 793
BstYI RGATCY 1 cut(s) 793
Bsu15I ATCGAT 1 cut(s) 383
BsuI GTATCC 1 cut(s) 1061
BsuRI GGCC 5 cut(s) 114, 627, 693, 953, 1202
BsuTUI ATCGAT 1 cut(s) 383
BtsCI GGATG 2 cut(s) 226, 892
BveI ACCTGC 1 cut(s) 1030
Cac8I GCNNGC 5 cut(s) 250, 338, 561, 742, 1255
CciI TCATGA 1 cut(s) 1105
CfoI GCGC 2 cut(s) 833, 964
Cfr13I GGNCC 3 cut(s) 113, 566, 785
ClaI ATCGAT 1 cut(s) 383
Csp6I GTAC 5 cut(s) 82, 95, 504, 764, 980
CspCI CAANNNNNGTGG 2 cut(s) 864, 899
CviAII CATG 9 cut(s) 72, 346, 432, 635, 689, 871, 1106, 1198, 1254
CviQI GTAC 5 cut(s) 82, 95, 504, 764, 980
DdeI CTNAG 5 cut(s) 105, 132, 253, 698, 942
DpnI GATC 3 cut(s) 465, 647, 795
DpnII GATC 3 cut(s) 463, 645, 793
EaeI YGGCCR 1 cut(s) 691
Eam1104I CTCTTC 3 cut(s) 558, 1017, 1039
EarI CTCTTC 3 cut(s) 558, 1017, 1039
Eco130I CCWWGG 2 cut(s) 32, 216
Eco47I GGWCC 2 cut(s) 566, 785
Eco47III AGCGCT 1 cut(s) 963
Eco57I CTGAAG 1 cut(s) 1011
EcoO109I RGGNCCY 1 cut(s) 566
EcoRI GAATTC 3 cut(s) 806, 991, 1005
EcoRII CCWGG 1 cut(s) 788
EcoT14I CCWWGG 2 cut(s) 32, 216
EcoT22I ATGCAT 1 cut(s) 454
ErhI CCWWGG 2 cut(s) 32, 216
FaeI CATG 9 cut(s) 75, 349, 435, 638, 692, 874, 1109, 1201, 1257
FatI CATG 9 cut(s) 71, 345, 431, 634, 688, 870, 1105, 1197, 1253
FauNDI CATATG 2 cut(s) 100, 1153
FbaI TGATCA 1 cut(s) 645
Fnu4HI GCNGC 1 cut(s) 1091
FokI GGATG 2 cut(s) 233, 899
Fsp4HI GCNGC 1 cut(s) 1091
FspBI CTAG 7 cut(s) 33, 176, 354, 767, 965, 1284, 1300
GlaI GCGC 2 cut(s) 832, 963
GluI GCNGC 1 cut(s) 1091
HaeII RGCGCY 1 cut(s) 965
HaeIII GGCC 5 cut(s) 114, 627, 693, 953, 1202
HapII CCGG 3 cut(s) 86, 1065, 1267
HhaI GCGC 2 cut(s) 833, 964
Hin1II CATG 9 cut(s) 75, 349, 435, 638, 692, 874, 1109, 1201, 1257
Hin6I GCGC 2 cut(s) 831, 962
HinP1I GCGC 2 cut(s) 831, 962
HincII GTYRAC 1 cut(s) 525
HindII GTYRAC 1 cut(s) 525
HindIII AAGCTT 1 cut(s) 334
HinfI GANTC 8 cut(s) 23, 28, 76, 89, 186, 257, 510, 1128
HpaI GTTAAC 1 cut(s) 525
HpaII CCGG 3 cut(s) 86, 1065, 1267
HphI GGTGA 1 cut(s) 676
Hpy166II GTNNAC 3 cut(s) 525, 704, 1214
Hpy188I TCNGA 6 cut(s) 270, 330, 779, 798, 1191, 1221
Hpy188III TCNNGA 3 cut(s) 467, 488, 1106
Hpy8I GTNNAC 3 cut(s) 525, 704, 1214
Hpy99I CGWCG 1 cut(s) 206
HpyAV CCTTC 5 cut(s) 796, 834, 891, 948, 1213
HpyCH4III ACNGT 1 cut(s) 1235
HpyCH4IV ACGT 1 cut(s) 572
HpyCH4V TGCA 8 cut(s) 146, 242, 340, 452, 563, 581, 847, 1124
HpyF10VI GCNNNNNNNGC 3 cut(s) 920, 959, 1263
HpyF3I CTNAG 5 cut(s) 105, 132, 253, 698, 942
HpySE526I ACGT 1 cut(s) 572
Hsp92II CATG 9 cut(s) 75, 349, 435, 638, 692, 874, 1109, 1201, 1257
HspAI GCGC 2 cut(s) 831, 962
Ksp22I TGATCA 1 cut(s) 645
KspAI GTTAAC 1 cut(s) 525
Kzo9I GATC 3 cut(s) 463, 645, 793
LguI GCTCTTC 1 cut(s) 558
LmnI GCTCC 3 cut(s) 20, 218, 1105
Lsp1109I GCAGC 1 cut(s) 1102
LweI GCATC 5 cut(s) 145, 349, 439, 461, 1111
MaeI CTAG 7 cut(s) 33, 176, 354, 767, 965, 1284, 1300
MaeII ACGT 1 cut(s) 572
MaeIII GTNAC 4 cut(s) 121, 226, 664, 1229
MalI GATC 3 cut(s) 465, 647, 795
MboI GATC 3 cut(s) 463, 645, 793
MboII GAAGA 9 cut(s) 54, 57, 252, 406, 428, 545, 1004, 1026, 1288
MfeI CAATTG 2 cut(s) 606, 729
MflI RGATCY 1 cut(s) 793
MlsI TGGCCA 1 cut(s) 693
MluCI AATT 8 cut(s) 426, 606, 729, 806, 856, 908, 991, 1005
MluNI TGGCCA 1 cut(s) 693
MlyI GAGTC 4 cut(s) 32, 37, 266, 1137
MmeI TCCRAC 2 cut(s) 308, 757
Mox20I TGGCCA 1 cut(s) 693
Mph1103I ATGCAT 1 cut(s) 454
MroXI GAANNNNTTC 2 cut(s) 543, 806
MscI TGGCCA 1 cut(s) 693
MseI TTAA 2 cut(s) 524, 723
MslI CAYNNNNRTG 2 cut(s) 141, 593
Msp20I TGGCCA 1 cut(s) 693
MspI CCGG 3 cut(s) 86, 1065, 1267
MspR9I CCNGG 2 cut(s) 86, 790
MunI CAATTG 2 cut(s) 606, 729
MvaI CCWGG 1 cut(s) 790
MvnI CGCG 1 cut(s) 831
MwoI GCNNNNNNNGC 3 cut(s) 920, 959, 1263
NciI CCSGG 1 cut(s) 86
NdeI CATATG 2 cut(s) 100, 1153
NdeII GATC 3 cut(s) 463, 645, 793
NlaIII CATG 9 cut(s) 75, 349, 435, 638, 692, 874, 1109, 1201, 1257
NlaIV GGNNCC 1 cut(s) 787
NmuCI GTSAC 2 cut(s) 664, 1229
NsiI ATGCAT 1 cut(s) 454
NspI RCATGY 1 cut(s) 1257
PaeI GCATGC 1 cut(s) 1257
PagI TCATGA 1 cut(s) 1105
PaqCI CACCTGC 1 cut(s) 1030
PasI CCCWGGG 1 cut(s) 789
PciSI GCTCTTC 1 cut(s) 558
PdmI GAANNNNTTC 2 cut(s) 543, 806
PfeI GAWTC 4 cut(s) 76, 89, 186, 510
PflFI GACNNNGTC 1 cut(s) 400
PkrI GCNGC 1 cut(s) 1092
PleI GAGTC 4 cut(s) 31, 36, 265, 1136
PpsI GAGTC 4 cut(s) 31, 36, 265, 1136
PpuMI RGGWCCY 1 cut(s) 566
PshAI GACNNNNGTC 1 cut(s) 571
Psp5II RGGWCCY 1 cut(s) 566
Psp6I CCWGG 1 cut(s) 788
PspGI CCWGG 1 cut(s) 788
PspN4I GGNNCC 1 cut(s) 787
PspPI GGNCC 3 cut(s) 113, 566, 785
PspPPI RGGWCCY 1 cut(s) 566
PsuI RGATCY 1 cut(s) 793
PsyI GACNNNGTC 1 cut(s) 400
RsaI GTAC 5 cut(s) 83, 96, 505, 765, 981
RsaNI GTAC 5 cut(s) 82, 95, 504, 764, 980
RseI CAYNNNNRTG 2 cut(s) 141, 593
SapI GCTCTTC 1 cut(s) 558
SaqAI TTAA 2 cut(s) 524, 723
SatI GCNGC 1 cut(s) 1091
Sau3AI GATC 3 cut(s) 463, 645, 793
Sau96I GGNCC 3 cut(s) 113, 566, 785
ScaI AGTACT 1 cut(s) 765
SchI GAGTC 4 cut(s) 32, 37, 266, 1137
ScrFI CCNGG 2 cut(s) 86, 790
SfaNI GCATC 5 cut(s) 145, 349, 439, 461, 1111
SfcI CTRYAG 1 cut(s) 759
SinI GGWCC 2 cut(s) 566, 785
SmiMI CAYNNNNRTG 2 cut(s) 141, 593
SmlI CTYRAG 1 cut(s) 1075
SmoI CTYRAG 1 cut(s) 1075
SpeI ACTAGT 2 cut(s) 353, 766
SphI GCATGC 1 cut(s) 1257
Sse9I AATT 8 cut(s) 426, 606, 729, 806, 856, 908, 991, 1005
SsiI CCGC 2 cut(s) 48, 405
SspMI CTAG 7 cut(s) 33, 176, 354, 767, 965, 1284, 1300
StyD4I CCNGG 2 cut(s) 84, 788
StyI CCWWGG 2 cut(s) 32, 216
TaaI ACNGT 1 cut(s) 1235
TaiI ACGT 1 cut(s) 575
TaqI TCGA 5 cut(s) 26, 383, 513, 810, 1148
TasI AATT 8 cut(s) 426, 606, 729, 806, 856, 908, 991, 1005
TatI WGTACW 2 cut(s) 503, 763
TfiI GAWTC 4 cut(s) 76, 89, 186, 510
Tru1I TTAA 2 cut(s) 524, 723
Tru9I TTAA 2 cut(s) 524, 723
TseFI GTSAC 2 cut(s) 664, 1229
TseI GCWGC 1 cut(s) 1090
Tsp45I GTSAC 2 cut(s) 664, 1229
TspDTI ATGAA 4 cut(s) 384, 429, 815, 1122
TspGWI ACGGA 2 cut(s) 82, 453
Tth111I GACNNNGTC 1 cut(s) 400
VpaK11BI GGWCC 2 cut(s) 566, 785
XapI RAATTY 5 cut(s) 806, 856, 908, 991, 1005
XceI RCATGY 1 cut(s) 1257
XcmI CCANNNNNNNNNTGG 1 cut(s) 592
XmaJI CCTAGG 1 cut(s) 32
XmnI GAANNNNTTC 2 cut(s) 543, 806
XspI CTAG 7 cut(s) 33, 176, 354, 767, 965, 1284, 1300
ZrmI AGTACT 1 cut(s) 765
Zsp2I ATGCAT 1 cut(s) 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.