Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0007590

Physical Location & Seq

Genomic Coordinates Reverse (-)

43315484 .. 43316119

Gene Structure 636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0261200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGAGAACCTAACTCGTATAGGATCTGAGTTTTATGGTGATGACCATGTTAACCGTGGAAATGGATCGAGTAAGGAGGCGCGGCCTTTGTTCCCTGCTTTGAAAACATTGCATATTGAGTGGGCCCAGAACCTGATAGAGTGGATGGAAGCGCCAACAGAAGGAGCAACTACAGTGTTTCCATTGCTCGAGGAGCTGACCTTGATTGGCTGTAACAAACTGACAAGTGCTCCCAGTCATTTTCCATCTCTCAAGAAGTTGGTGATAGAATGGCTGGATAGCGGAGGCATGCCAATAGCAAGTATTCTAAGCAATAAACTCACCGCTCTCACTCATCTCAGGTTATTGGAAGTGGGGGGACTTACTTGTCTGCCGGAAGGGATGTTAGAAAACAACAAGAATCTTGCACATTTAGAAATAACTCAGTGTTCAGAGTTGACTTGTATTTCTCCCCAATCACAAGGATTTGAGTACTGCTGCGCATCTCTTTCATATTTGCGGATATGGATTTGTCAGAATCTCAGATATTTACCTGATGGGCTACTCACTCCTTCTCTTAAAGAGATGACGTTGTATTATTGTCCCAATCTAGAGTACATCTGTAATACCCGAAAAATTCAAGTTAATTTCCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009308 GO:0009690 GO:0009850 GO:0009987 GO:0010817 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0034754 GO:0036211 GO:0042445 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0071944 GO:0080134 GO:0080148 GO:0140096 GO:1901564 GO:2000070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Copine zf-C3HC4_3

Protein Analysis

211

Amino Acids

23.75

Weight (kDa)

5.56

Isoelectric Point (pI)

46.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007590)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67800 AT1G67800 AT1G67800 AT1G67800 AT1G67800 AT1G67800
fragaria_vesca	FvH4_4g25370
malus_domestica	MD13G1104400.v1.1 MD16G1104500.v1.1
prunus_persica	Prupe.1G242100_v2.0.a1 Prupe.1G242100_v2.0.a1 Prupe.1G242100_v2.0.a1
pyrus_communis	pycom13g09060
rosa_chinensis	RchiOBHm_Chr4g0432661
rosa_laevigata	RLG00000006825
rosa_multiflora	Rmu_sc0009481.1_g000002
rosa_roxburghii	Rroxscaffold_5G00374120
rosa_rugosa	Rorug04G0261200 Rorug04G0261300
rosa_samantha	Rh4AG315900 Rh4BG323900 Rh4CG338900 Rh4DG319300
rosa_wichuraiana	Rw4G027480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	366
Acc16I	TGCGCA	1 cut(s)	481
AccBSI	CCGCTC	1 cut(s)	326
AccII	CGCG	1 cut(s)	82
AciI	CCGC	4 cut(s)	82, 282, 324, 499
AclWI	GGATC	2 cut(s)	31, 73
AcsI	RAATTY	1 cut(s)	615
AfaI	GTAC	2 cut(s)	473, 596
AfiI	CCNNNNNNNGG	1 cut(s)	161
AgsI	TTSAA	2 cut(s)	103, 620
AluBI	AGCT	1 cut(s)	196
AluI	AGCT	1 cut(s)	196
Alw21I	GWGCWC	1 cut(s)	232
AlwI	GGATC	2 cut(s)	31, 73
AlwNI	CAGNNNCTG	1 cut(s)	133
Ama87I	CYCGRG	1 cut(s)	188
AoxI	GGCC	2 cut(s)	83, 123
ApaI	GGGCCC	1 cut(s)	127
ApeKI	GCWGC	1 cut(s)	477
ApoI	RAATTY	1 cut(s)	615
AspLEI	GCGC	3 cut(s)	82, 154, 482
AspS9I	GGNCC	2 cut(s)	123, 124
AsuHPI	GGTGA	3 cut(s)	50, 274, 313
AvaI	CYCGRG	1 cut(s)	188
BaeGI	GKGCMC	1 cut(s)	127
BanII	GRGCYC	1 cut(s)	127
Bbv12I	GWGCWC	1 cut(s)	232
BbvI	GCAGC	1 cut(s)	464
BccI	CCATC	3 cut(s)	139, 253, 530
BfaI	CTAG	1 cut(s)	590
BfmI	CTRYAG	1 cut(s)	171
BfoI	RGCGCY	1 cut(s)	155
BisI	GCNGC	2 cut(s)	83, 478
BlsI	GCNGC	2 cut(s)	84, 479
BmcAI	AGTACT	1 cut(s)	473
BmeT110I	CYCGRG	1 cut(s)	188
BmgT120I	GGNCC	2 cut(s)	123, 124
BmiI	GGNNCC	1 cut(s)	125
BmrI	ACTGGG	1 cut(s)	228
BmsI	GCATC	1 cut(s)	491
BmuI	ACTGGG	1 cut(s)	228
BpuEI	CTTGAG	1 cut(s)	236
BsaJI	CCNNGG	1 cut(s)	55
BsaXI	ACNNNNNCTCC	2 cut(s)	214, 244
Bsc4I	CCNNNNNNNGG	1 cut(s)	161
Bse1I	ACTGG	1 cut(s)	234
Bse3DI	GCAATG	2 cut(s)	107, 182
BseDI	CCNNGG	1 cut(s)	55
BseGI	GGATG	2 cut(s)	150, 387
BseLI	CCNNNNNNNGG	1 cut(s)	161
BseMI	GCAATG	2 cut(s)	107, 182
BseMII	CTCAG	4 cut(s)	18, 352, 437, 535
BseNI	ACTGG	1 cut(s)	234
BseRI	GAGGAG	1 cut(s)	206
BseSI	GKGCMC	1 cut(s)	127
BseXI	GCAGC	1 cut(s)	464
Bsh1236I	CGCG	1 cut(s)	82
BshFI	GGCC	2 cut(s)	85, 125
BsiHKAI	GWGCWC	1 cut(s)	232
BsiHKCI	CYCGRG	1 cut(s)	188
BsiSI	CCGG	1 cut(s)	374
BslFI	GGGAC	2 cut(s)	372, 567
BslI	CCNNNNNNNGG	1 cut(s)	161
BsmFI	GGGAC	2 cut(s)	372, 567
BsnI	GGCC	2 cut(s)	85, 125
BsoBI	CYCGRG	1 cut(s)	188
Bsp120I	GGGCCC	1 cut(s)	123
Bsp1286I	GDGCHC	2 cut(s)	127, 232
Bsp143I	GATC	2 cut(s)	23, 65
BspACI	CCGC	4 cut(s)	82, 282, 324, 499
BspANI	GGCC	2 cut(s)	85, 125
BspCNI	CTCAG	4 cut(s)	19, 351, 436, 534
BspFNI	CGCG	1 cut(s)	82
BspLI	GGNNCC	1 cut(s)	125
BspPI	GGATC	2 cut(s)	31, 73
BsrBI	CCGCTC	1 cut(s)	326
BsrDI	GCAATG	2 cut(s)	107, 182
BsrI	ACTGG	1 cut(s)	234
BssECI	CCNNGG	1 cut(s)	55
BssMI	GATC	2 cut(s)	23, 65
Bst4CI	ACNGT	2 cut(s)	56, 175
BstC8I	GCNNGC	1 cut(s)	290
BstDEI	CTNAG	5 cut(s)	27, 308, 338, 423, 521
BstDSI	CCRYGG	1 cut(s)	55
BstF5I	GGATG	2 cut(s)	150, 387
BstFNI	CGCG	1 cut(s)	82
BstH2I	RGCGCY	1 cut(s)	155
BstHHI	GCGC	3 cut(s)	82, 154, 482
BstKTI	GATC	2 cut(s)	26, 68
BstMBI	GATC	2 cut(s)	23, 65
BstMWI	GCNNNNNNNGC	1 cut(s)	193
BstNSI	RCATGY	1 cut(s)	292
BstSFI	CTRYAG	1 cut(s)	171
BstSLI	GKGCMC	1 cut(s)	127
BstUI	CGCG	1 cut(s)	82
BstV1I	GCAGC	1 cut(s)	464
BstX2I	RGATCY	1 cut(s)	23
BstYI	RGATCY	1 cut(s)	23
BsuRI	GGCC	2 cut(s)	85, 125
BtgI	CCRYGG	1 cut(s)	55
BtsCI	GGATG	2 cut(s)	150, 387
BtsIMutI	CAGTG	2 cut(s)	180, 431
Cac8I	GCNNGC	1 cut(s)	290
CaiI	CAGNNNCTG	1 cut(s)	133
CfoI	GCGC	3 cut(s)	82, 154, 482
Cfr13I	GGNCC	2 cut(s)	123, 124
Csp6I	GTAC	2 cut(s)	472, 595
CviAII	CATG	2 cut(s)	47, 289
CviJI	RGCY	6 cut(s)	85, 125, 196, 210, 274, 541
CviKI_1	RGCY	6 cut(s)	85, 125, 196, 210, 274, 541
CviQI	GTAC	2 cut(s)	472, 595
DdeI	CTNAG	5 cut(s)	27, 308, 338, 423, 521
DpnI	GATC	2 cut(s)	25, 67
DpnII	GATC	2 cut(s)	23, 65
DrdI	GACNNNNNNGTC	1 cut(s)	366
DseDI	GACNNNNNNGTC	1 cut(s)	366
Eco24I	GRGCYC	1 cut(s)	127
Eco88I	CYCGRG	1 cut(s)	188
EcoT38I	GRGCYC	1 cut(s)	127
FaeI	CATG	2 cut(s)	50, 292
FaiI	YATR	7 cut(s)	20, 36, 48, 114, 290, 493, 505
FaqI	GGGAC	2 cut(s)	372, 567
FatI	CATG	2 cut(s)	46, 288
Fnu4HI	GCNGC	2 cut(s)	83, 478
FokI	GGATG	2 cut(s)	157, 394
FriOI	GRGCYC	1 cut(s)	127
Fsp4HI	GCNGC	2 cut(s)	83, 478
FspBI	CTAG	1 cut(s)	590
FspI	TGCGCA	1 cut(s)	481
GlaI	GCGC	3 cut(s)	81, 153, 481
GluI	GCNGC	2 cut(s)	83, 478
HaeII	RGCGCY	1 cut(s)	155
HaeIII	GGCC	2 cut(s)	85, 125
HapII	CCGG	1 cut(s)	374
HhaI	GCGC	3 cut(s)	82, 154, 482
Hin1II	CATG	2 cut(s)	50, 292
Hin6I	GCGC	3 cut(s)	80, 152, 480
HinP1I	GCGC	3 cut(s)	80, 152, 480
HincII	GTYRAC	2 cut(s)	52, 438
HindII	GTYRAC	2 cut(s)	52, 438
HinfI	GANTC	2 cut(s)	400, 517
HpaI	GTTAAC	1 cut(s)	52
HpaII	CCGG	1 cut(s)	374
HphI	GGTGA	3 cut(s)	50, 274, 313
Hpy166II	GTNNAC	2 cut(s)	52, 438
Hpy188I	TCNGA	5 cut(s)	28, 433, 516, 524, 632
Hpy188III	TCNNGA	2 cut(s)	253, 590
Hpy8I	GTNNAC	2 cut(s)	52, 438
HpyAV	CCTTC	3 cut(s)	155, 371, 561
HpyCH4III	ACNGT	2 cut(s)	56, 175
HpyCH4IV	ACGT	1 cut(s)	569
HpyCH4V	TGCA	2 cut(s)	112, 407
HpyF10VI	GCNNNNNNNGC	1 cut(s)	193
HpyF3I	CTNAG	5 cut(s)	27, 308, 338, 423, 521
HpySE526I	ACGT	1 cut(s)	569
Hsp92II	CATG	2 cut(s)	50, 292
HspAI	GCGC	3 cut(s)	80, 152, 480
KspAI	GTTAAC	1 cut(s)	52
Kzo9I	GATC	2 cut(s)	23, 65
LmnI	GCTCC	3 cut(s)	164, 193, 235
LpnPI	CCDG	8 cut(s)	108, 140, 146, 247, 260, 325, 387, 546
Lsp1109I	GCAGC	1 cut(s)	464
LweI	GCATC	1 cut(s)	491
MaeI	CTAG	1 cut(s)	590
MaeII	ACGT	1 cut(s)	569
MaeIII	GTNAC	1 cut(s)	212
MalI	GATC	2 cut(s)	25, 67
MbiI	CCGCTC	1 cut(s)	326
MboI	GATC	2 cut(s)	23, 65
MflI	RGATCY	1 cut(s)	23
MhlI	GDGCHC	2 cut(s)	127, 232
MluCI	AATT	2 cut(s)	615, 625
MnlI	CCTC	3 cut(s)	70, 184, 278
MseI	TTAA	3 cut(s)	51, 558, 624
MspI	CCGG	1 cut(s)	374
MvnI	CGCG	1 cut(s)	82
MwoI	GCNNNNNNNGC	1 cut(s)	193
NdeII	GATC	2 cut(s)	23, 65
NlaIII	CATG	2 cut(s)	50, 292
NlaIV	GGNNCC	1 cut(s)	125
NsbI	TGCGCA	1 cut(s)	481
NspI	RCATGY	1 cut(s)	292
PaeI	GCATGC	1 cut(s)	292
PaeR7I	CTCGAG	1 cut(s)	188
PfeI	GAWTC	2 cut(s)	400, 517
PkrI	GCNGC	2 cut(s)	84, 479
PspN4I	GGNNCC	1 cut(s)	125
PspOMI	GGGCCC	1 cut(s)	123
PspPI	GGNCC	2 cut(s)	123, 124
PspXI	VCTCGAGB	1 cut(s)	188
PstNI	CAGNNNCTG	1 cut(s)	133
PsuI	RGATCY	1 cut(s)	23
RsaI	GTAC	2 cut(s)	473, 596
RsaNI	GTAC	2 cut(s)	472, 595
SaqAI	TTAA	3 cut(s)	51, 558, 624
SatI	GCNGC	2 cut(s)	83, 478
Sau3AI	GATC	2 cut(s)	23, 65
Sau96I	GGNCC	2 cut(s)	123, 124
ScaI	AGTACT	1 cut(s)	473
SduI	GDGCHC	2 cut(s)	127, 232
SetI	ASST	7 cut(s)	12, 135, 198, 203, 344, 535, 572
SfaNI	GCATC	1 cut(s)	491
SfcI	CTRYAG	1 cut(s)	171
Sfr274I	CTCGAG	1 cut(s)	188
SlaI	CTCGAG	1 cut(s)	188
SmlI	CTYRAG	2 cut(s)	188, 251
SmoI	CTYRAG	2 cut(s)	188, 251
SphI	GCATGC	1 cut(s)	292
Sse9I	AATT	2 cut(s)	615, 625
SsiI	CCGC	4 cut(s)	82, 282, 324, 499
SspMI	CTAG	1 cut(s)	590
TaaI	ACNGT	2 cut(s)	56, 175
TaiI	ACGT	1 cut(s)	572
TaqI	TCGA	2 cut(s)	68, 189
TasI	AATT	2 cut(s)	615, 625
TatI	WGTACW	2 cut(s)	471, 594
TauI	GCSGC	1 cut(s)	85
TfiI	GAWTC	2 cut(s)	400, 517
Tru1I	TTAA	3 cut(s)	51, 558, 624
Tru9I	TTAA	3 cut(s)	51, 558, 624
TscAI	CASTG	2 cut(s)	180, 431
TseI	GCWGC	1 cut(s)	477
TspDTI	ATGAA	1 cut(s)	480
TspRI	CASTG	2 cut(s)	180, 431
XapI	RAATTY	1 cut(s)	615
XbaI	TCTAGA	1 cut(s)	589
XceI	RCATGY	1 cut(s)	292
XcmI	CCANNNNNNNNNTGG	1 cut(s)	53
XhoI	CTCGAG	1 cut(s)	188
XspI	CTAG	1 cut(s)	590
ZrmI	AGTACT	1 cut(s)	473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.