Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0007590

Physical Location & Seq

Genomic Coordinates Reverse (-)

25590125 .. 25594062

Gene Structure 3938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G242100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGGGAGGCAAAAGCTCGAAAGATTCGAGCCCGAGGCTGTTTTCGCATGGTGGATCAACTGCTTCTTCTTCTTCATGGGATCAGTATGGGTATCCACAGCCATCACGCCCTCCACAAAACCCCTACTGTACCCCTCAGCATCACTATGCACCTTCACCATCTTTTAACCATGTGTCTCGGCCAGTTACAGTGCCCAACCCCCGAAGGAGGTTGGATAGAAAATACTCAAAGATAGCTGATAATTACAGTTCCTTGGATGAGGTTACTTCTGCTCTTGCACAAGCTGGCCTTGAGTCTTCTAATTTGATTGTTGGTATTGATTTCACGAAAAGCAATGAGTGGACAGGTTCGAGGTCATTTAACCGGAAAAGCTTGCATCACATTGGAAATGTTCAAAACCCCTATGAACAAGCAATATCAATTATTGGGAAAACATTATCTGTTTTCGATGAAGATAATCTAATTCCGTGCTTTGGGTTTGGAGATGCATCTACACATGATCAAGATGTCTTTAGCTTCTATCAGGACGAACACTACTGTAACGGATTTGAGGAAGTATTGGCACGATATCGAGAAATTGTTCCCCATCTTCGACTTGCAGGGCCTACATCTTTTGCACCGATTATTGAGATGGCCATGACTATTGTTGAGCAAAGCGGAGGCCAGTACCATGTTTTGCTGATCATTGCTGATGGCCAGGTGACAAGAAGTGTTGACACAAAACATGGTCAGCTCAGCTCACAAGAACAAAAGACAATTGATGCAATTGTAAAAGCAAGTGTGTACCCCTTGTCTATAATCCTAGTGGGGATTGGAGATGGCCCTTGGGACATGATGAGGGAATTCGACGATAACATCCCTGCTCGAGCATTCGATAATTTTCAGTTTGTGAATTTTACGGAAATCATGTCAAAGAAGGTGGATCTATCCAGAAAGCAGACAGAATTTGCTCTTTCAGCCCTGATGGAAATACCTTCTCAATATAAAGCAACTCTAGAGCTTGGCATATTGGGAACACGCAATGGAAATTATCCAAACATGGTTCCCCTTCCCCCACCCCATTATGCTGCAGTATCTTCAGGCAGCAGCAACACAAAACTTTACAGCAATTCAAACAGTTTTCAGCAGAGGACAGCTCCTTATGCTGGATATGATAATGCAGGAGCCAGCACACCTTCTTATACAGGATATGATAGTCAGGTTTGCCCCATTTGTCTTACGAATCCGAAAGACATGGCGTTTGGTTGTGGGCATCAGACTTGTTGTGACTGTGGAGAATACCTCGAATTGTGCCCCATTTGCCGGAGTTCGATCCAAACTAGAATAAGACTCTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009308 GO:0009690 GO:0009850 GO:0009987 GO:0010817 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0034754 GO:0036211 GO:0042445 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0071944 GO:0080134 GO:0080148 GO:0140096 GO:1901564 GO:2000070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Copine zf-C3HC4_3

Protein Analysis

446

Amino Acids

49.26

Weight (kDa)

6.0

Isoelectric Point (pI)

48.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007590)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67800 AT1G67800 AT1G67800 AT1G67800 AT1G67800 AT1G67800
fragaria_vesca	FvH4_4g25370
malus_domestica	MD13G1104400.v1.1 MD16G1104500.v1.1
prunus_persica	Prupe.1G242100_v2.0.a1 Prupe.1G242100_v2.0.a1 Prupe.1G242100_v2.0.a1
pyrus_communis	pycom13g09060
rosa_chinensis	RchiOBHm_Chr4g0432661
rosa_laevigata	RLG00000006825
rosa_multiflora	Rmu_sc0009481.1_g000002
rosa_roxburghii	Rroxscaffold_5G00374120
rosa_rugosa	Rorug04G0261200 Rorug04G0261300
rosa_samantha	Rh4AG315900 Rh4BG323900 Rh4CG338900 Rh4DG319300
rosa_wichuraiana	Rw4G027480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	657
AclWI	GGATC	4 cut(s)	61, 87, 930, 1306
AcoI	YGGCCR	3 cut(s)	179, 633, 694
AcsI	RAATTY	3 cut(s)	842, 892, 944
AcuI	CTGAAG	1 cut(s)	1062
AfaI	GTAC	3 cut(s)	130, 668, 785
AfiI	CCNNNNNNNGG	4 cut(s)	207, 473, 1145, 1302
AgsI	TTSAA	2 cut(s)	395, 1113
AjnI	CCWGG	1 cut(s)	696
AluBI	AGCT	9 cut(s)	15, 236, 284, 372, 516, 733, 738, 1000, 1136
AluI	AGCT	9 cut(s)	15, 236, 284, 372, 516, 733, 738, 1000, 1136
Alw26I	GTCTC	1 cut(s)	180
AlwI	GGATC	4 cut(s)	61, 87, 930, 1306
Ama87I	CYCGRG	2 cut(s)	31, 864
AoxI	GGCC	7 cut(s)	179, 286, 602, 633, 661, 694, 820
ApeKI	GCWGC	3 cut(s)	1067, 1083, 1086
ApoI	RAATTY	3 cut(s)	842, 892, 944
ArsI	GACNNNNNNTTYG	2 cut(s)	1223, 1255
Asp700I	GAANNNNTTC	1 cut(s)	579
AspS9I	GGNCC	2 cut(s)	602, 821
AsuHPI	GGTGA	2 cut(s)	147, 712
AvaI	CYCGRG	2 cut(s)	31, 864
BaeGI	GKGCMC	2 cut(s)	195, 1295
BalI	TGGCCA	2 cut(s)	635, 696
BanII	GRGCYC	1 cut(s)	32
BbsI	GAAGAC	1 cut(s)	288
BbvCI	CCTCAGC	1 cut(s)	135
BbvI	GCAGC	3 cut(s)	1054, 1095, 1098
BccI	CCATC	7 cut(s)	109, 166, 594, 625, 686, 812, 958
BciT130I	CCWGG	1 cut(s)	698
BciVI	GTATCC	1 cut(s)	102
BclI	TGATCA	2 cut(s)	499, 681
BcoDI	GTCTC	1 cut(s)	180
BfaI	CTAG	4 cut(s)	803, 995, 1320, 1336
BfmI	CTRYAG	1 cut(s)	1068
BfuI	GTATCC	1 cut(s)	102
BisI	GCNGC	3 cut(s)	1068, 1084, 1087
BlpI	GCTNAGC	1 cut(s)	734
BlsI	GCNGC	3 cut(s)	1069, 1085, 1088
Bme1390I	CCNGG	1 cut(s)	698
BmeT110I	CYCGRG	2 cut(s)	31, 864
BmgT120I	GGNCC	2 cut(s)	602, 821
BmiI	GGNNCC	2 cut(s)	1044, 1165
BmrFI	CCNGG	1 cut(s)	698
BmsI	GCATC	6 cut(s)	148, 385, 475, 497, 751, 1261
BpiI	GAAGAC	1 cut(s)	288
BplI	GAGNNNNNCTC	4 cut(s)	1120, 1152, 1266, 1298
Bpu10I	CCTNAGC	1 cut(s)	135
Bpu1102I	GCTNAGC	1 cut(s)	734
BpuEI	CTTGAG	1 cut(s)	311
BsaJI	CCNNGG	3 cut(s)	32, 252, 824
BsaWI	WCCGGW	1 cut(s)	363
Bsc4I	CCNNNNNNNGG	4 cut(s)	207, 473, 1145, 1302
Bse1I	ACTGG	2 cut(s)	182, 664
Bse3DI	GCAATG	3 cut(s)	340, 684, 1027
BseBI	CCWGG	1 cut(s)	698
BseDI	CCNNGG	3 cut(s)	32, 252, 824
BseGI	GGATG	2 cut(s)	262, 855
BseLI	CCNNNNNNNGG	4 cut(s)	207, 473, 1145, 1302
BseMI	GCAATG	3 cut(s)	340, 684, 1027
BseMII	CTCAG	2 cut(s)	149, 748
BseNI	ACTGG	2 cut(s)	182, 664
BseSI	GKGCMC	2 cut(s)	195, 1295
BseXI	GCAGC	3 cut(s)	1054, 1095, 1098
BshFI	GGCC	7 cut(s)	181, 288, 604, 635, 663, 696, 822
BsiHKCI	CYCGRG	2 cut(s)	31, 864
BsiSI	CCGG	2 cut(s)	364, 1303
BslFI	GGGAC	1 cut(s)	842
BslI	CCNNNNNNNGG	4 cut(s)	207, 473, 1145, 1302
BsmAI	GTCTC	1 cut(s)	180
BsmFI	GGGAC	1 cut(s)	842
BsmI	GAATGC	1 cut(s)	869
BsnI	GGCC	7 cut(s)	181, 288, 604, 635, 663, 696, 822
BsoBI	CYCGRG	2 cut(s)	31, 864
Bsp1286I	GDGCHC	3 cut(s)	32, 195, 1295
Bsp143I	GATC	6 cut(s)	53, 79, 499, 681, 922, 1311
Bsp1720I	GCTNAGC	1 cut(s)	734
BspACI	CCGC	1 cut(s)	657
BspANI	GGCC	7 cut(s)	181, 288, 604, 635, 663, 696, 822
BspCNI	CTCAG	2 cut(s)	148, 747
BspLI	GGNNCC	2 cut(s)	1044, 1165
BspMAI	CTGCAG	1 cut(s)	1072
BspPI	GGATC	4 cut(s)	61, 87, 930, 1306
BsrDI	GCAATG	3 cut(s)	340, 684, 1027
BsrI	ACTGG	2 cut(s)	182, 664
BssECI	CCNNGG	3 cut(s)	32, 252, 824
BssMI	GATC	6 cut(s)	53, 79, 499, 681, 922, 1311
BssT1I	CCWWGG	2 cut(s)	252, 824
Bst2UI	CCWGG	1 cut(s)	698
Bst4CI	ACNGT	6 cut(s)	128, 190, 248, 539, 1118, 1271
BstC8I	GCNNGC	3 cut(s)	286, 374, 1168
BstDEI	CTNAG	2 cut(s)	135, 734
BstF5I	GGATG	2 cut(s)	262, 855
BstKTI	GATC	6 cut(s)	56, 82, 502, 684, 925, 1314
BstMAI	GTCTC	1 cut(s)	180
BstMBI	GATC	6 cut(s)	53, 79, 499, 681, 922, 1311
BstMWI	GCNNNNNNNGC	4 cut(s)	43, 956, 1142, 1299
BstNI	CCWGG	1 cut(s)	698
BstSCI	CCNGG	1 cut(s)	696
BstSFI	CTRYAG	1 cut(s)	1068
BstSLI	GKGCMC	2 cut(s)	195, 1295
BstV1I	GCAGC	3 cut(s)	1054, 1095, 1098
BstV2I	GAAGAC	1 cut(s)	288
BstX2I	RGATCY	1 cut(s)	922
BstYI	RGATCY	1 cut(s)	922
BsuI	GTATCC	1 cut(s)	102
BsuRI	GGCC	7 cut(s)	181, 288, 604, 635, 663, 696, 822
BtsCI	GGATG	2 cut(s)	262, 855
BtsIMutI	CAGTG	1 cut(s)	195
Cac8I	GCNNGC	3 cut(s)	286, 374, 1168
Cfr13I	GGNCC	2 cut(s)	602, 821
Csp6I	GTAC	3 cut(s)	129, 667, 784
CspCI	CAANNNNNGTGG	2 cut(s)	900, 935
CviQI	GTAC	3 cut(s)	129, 667, 784
DdeI	CTNAG	2 cut(s)	135, 734
DpnI	GATC	6 cut(s)	55, 81, 501, 683, 924, 1313
DpnII	GATC	6 cut(s)	53, 79, 499, 681, 922, 1311
EaeI	YGGCCR	3 cut(s)	179, 633, 694
Eco130I	CCWWGG	2 cut(s)	252, 824
Eco24I	GRGCYC	1 cut(s)	32
Eco32I	GATATC	1 cut(s)	569
Eco57I	CTGAAG	1 cut(s)	1062
Eco88I	CYCGRG	2 cut(s)	31, 864
EcoO109I	RGGNCCY	1 cut(s)	602
EcoRI	GAATTC	1 cut(s)	842
EcoRII	CCWGG	1 cut(s)	696
EcoRV	GATATC	1 cut(s)	569
EcoT14I	CCWWGG	2 cut(s)	252, 824
EcoT22I	ATGCAT	1 cut(s)	490
EcoT38I	GRGCYC	1 cut(s)	32
ErhI	CCWWGG	2 cut(s)	252, 824
FalI	AAGNNNNNCTT	2 cut(s)	273, 305
FaqI	GGGAC	1 cut(s)	842
FbaI	TGATCA	2 cut(s)	499, 681
Fnu4HI	GCNGC	3 cut(s)	1068, 1084, 1087
FokI	GGATG	2 cut(s)	269, 842
FriOI	GRGCYC	1 cut(s)	32
Fsp4HI	GCNGC	3 cut(s)	1068, 1084, 1087
FspBI	CTAG	4 cut(s)	803, 995, 1320, 1336
GluI	GCNGC	3 cut(s)	1068, 1084, 1087
HaeIII	GGCC	7 cut(s)	181, 288, 604, 635, 663, 696, 822
HapII	CCGG	2 cut(s)	364, 1303
HincII	GTYRAC	1 cut(s)	715
HindII	GTYRAC	1 cut(s)	715
HindIII	AAGCTT	1 cut(s)	370
HinfI	GANTC	4 cut(s)	23, 293, 1222, 1329
HpaII	CCGG	2 cut(s)	364, 1303
HphI	GGTGA	2 cut(s)	147, 712
Hpy166II	GTNNAC	3 cut(s)	342, 715, 784
Hpy188I	TCNGA	2 cut(s)	1227, 1257
Hpy188III	TCNNGA	6 cut(s)	325, 503, 524, 572, 930, 995
Hpy8I	GTNNAC	3 cut(s)	342, 715, 784
Hpy99I	CGWCG	1 cut(s)	851
HpyAV	CCTTC	6 cut(s)	162, 198, 910, 984, 1058, 1185
HpyCH4III	ACNGT	6 cut(s)	128, 190, 248, 539, 1118, 1271
HpyCH4V	TGCA	9 cut(s)	149, 278, 376, 488, 599, 617, 764, 1070, 1160
HpyF10VI	GCNNNNNNNGC	4 cut(s)	43, 956, 1142, 1299
HpyF3I	CTNAG	2 cut(s)	135, 734
Ksp22I	TGATCA	2 cut(s)	499, 681
Kzo9I	GATC	6 cut(s)	53, 79, 499, 681, 922, 1311
LmnI	GCTCC	2 cut(s)	1141, 1163
Lsp1109I	GCAGC	3 cut(s)	1054, 1095, 1098
LweI	GCATC	6 cut(s)	148, 385, 475, 497, 751, 1261
MaeI	CTAG	4 cut(s)	803, 995, 1320, 1336
MaeIII	GTNAC	5 cut(s)	184, 262, 539, 700, 1265
MalI	GATC	6 cut(s)	55, 81, 501, 683, 924, 1313
MboI	GATC	6 cut(s)	53, 79, 499, 681, 922, 1311
MboII	GAAGA	7 cut(s)	57, 60, 63, 288, 464, 581, 1068
MfeI	CAATTG	2 cut(s)	756, 765
MflI	RGATCY	1 cut(s)	922
MhlI	GDGCHC	3 cut(s)	32, 195, 1295
MlsI	TGGCCA	2 cut(s)	635, 696
MluNI	TGGCCA	2 cut(s)	635, 696
MlyI	GAGTC	2 cut(s)	302, 1323
MmeI	TCCRAC	1 cut(s)	192
Mox20I	TGGCCA	2 cut(s)	635, 696
Mph1103I	ATGCAT	1 cut(s)	490
MroXI	GAANNNNTTC	1 cut(s)	579
MscI	TGGCCA	2 cut(s)	635, 696
MseI	TTAA	2 cut(s)	165, 360
MslI	CAYNNNNRTG	1 cut(s)	144
Msp20I	TGGCCA	2 cut(s)	635, 696
MspI	CCGG	2 cut(s)	364, 1303
MspR9I	CCNGG	1 cut(s)	698
MunI	CAATTG	2 cut(s)	756, 765
Mva1269I	GAATGC	1 cut(s)	869
MvaI	CCWGG	1 cut(s)	698
MwoI	GCNNNNNNNGC	4 cut(s)	43, 956, 1142, 1299
NdeII	GATC	6 cut(s)	53, 79, 499, 681, 922, 1311
NlaIV	GGNNCC	2 cut(s)	1044, 1165
NmeAIII	GCCGAG	1 cut(s)	157
NmuCI	GTSAC	2 cut(s)	700, 1265
NsiI	ATGCAT	1 cut(s)	490
PaeR7I	CTCGAG	1 cut(s)	864
PcsI	WCGNNNNNNNCGW	1 cut(s)	23
PctI	GAATGC	1 cut(s)	869
PdmI	GAANNNNTTC	1 cut(s)	579
PfeI	GAWTC	2 cut(s)	23, 1222
PkrI	GCNGC	3 cut(s)	1069, 1085, 1088
PleI	GAGTC	2 cut(s)	301, 1323
PpsI	GAGTC	2 cut(s)	301, 1323
Psp6I	CCWGG	1 cut(s)	696
PspGI	CCWGG	1 cut(s)	696
PspN4I	GGNNCC	2 cut(s)	1044, 1165
PspPI	GGNCC	2 cut(s)	602, 821
PspXI	VCTCGAGB	1 cut(s)	864
PstI	CTGCAG	1 cut(s)	1072
PsuI	RGATCY	1 cut(s)	922
RsaI	GTAC	3 cut(s)	130, 668, 785
RsaNI	GTAC	3 cut(s)	129, 667, 784
RseI	CAYNNNNRTG	1 cut(s)	144
SaqAI	TTAA	2 cut(s)	165, 360
SatI	GCNGC	3 cut(s)	1068, 1084, 1087
Sau3AI	GATC	6 cut(s)	53, 79, 499, 681, 922, 1311
Sau96I	GGNCC	2 cut(s)	602, 821
SchI	GAGTC	2 cut(s)	302, 1323
ScrFI	CCNGG	1 cut(s)	698
SduI	GDGCHC	3 cut(s)	32, 195, 1295
SfaNI	GCATC	6 cut(s)	148, 385, 475, 497, 751, 1261
SfcI	CTRYAG	1 cut(s)	1068
Sfr274I	CTCGAG	1 cut(s)	864
SlaI	CTCGAG	1 cut(s)	864
SmiMI	CAYNNNNRTG	1 cut(s)	144
SmlI	CTYRAG	2 cut(s)	290, 864
SmoI	CTYRAG	2 cut(s)	290, 864
SsiI	CCGC	1 cut(s)	657
SspMI	CTAG	4 cut(s)	803, 995, 1320, 1336
StyD4I	CCNGG	1 cut(s)	696
StyI	CCWWGG	2 cut(s)	252, 824
TaaI	ACNGT	6 cut(s)	128, 190, 248, 539, 1118, 1271
TfiI	GAWTC	2 cut(s)	23, 1222
Tru1I	TTAA	2 cut(s)	165, 360
Tru9I	TTAA	2 cut(s)	165, 360
TscAI	CASTG	1 cut(s)	195
TseFI	GTSAC	2 cut(s)	700, 1265
TseI	GCWGC	3 cut(s)	1067, 1083, 1086
Tsp45I	GTSAC	2 cut(s)	700, 1265
TspDTI	ATGAA	3 cut(s)	63, 420, 465
TspGWI	ACGGA	3 cut(s)	456, 558, 914
TspRI	CASTG	1 cut(s)	195
XapI	RAATTY	3 cut(s)	842, 892, 944
XbaI	TCTAGA	1 cut(s)	994
XhoI	CTCGAG	1 cut(s)	864
XmnI	GAANNNNTTC	1 cut(s)	579
XspI	CTAG	4 cut(s)	803, 995, 1320, 1336
Zsp2I	ATGCAT	1 cut(s)	490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.