Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0007590

Physical Location & Seq

Genomic Coordinates Forward (+)

6057849 .. 6059705

Gene Structure 1857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g09060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGGAGCAAAAAGCTCGAAAGATTCGATTGTGAGACAGTTTTCGCACAGAGGATCAACTGCAACTTCTTCATGGAATCAGCATGGCTACTCTGAGCCATCACACCCTCCACAACACCCGTATCATACACCGCAGCATCGCTACGCTCCTTCGCCATCTTTTAACCGTGTGTCTCAGCCAGTTACAGCTCCCCAGCATCGAAGGACTTTGCATAAAAGTTACTCAAGGATTGCTGATAATTATCGTTCTTTGGATGAGGTTACTGCTGCTCTTTCACAAGCTGGCCTAGAGTCGTCTAATCTGATAGTTGGTATTGATTTCACAAAGAGCAATGAGTGGACAGGTTCGAGGTCATTTCACCGGAAAAGCTTGCATCACATTGGAAATGCTCAAAATCCTTACGAACAAGCGATCTCAATTATCGGGAAAACACTATCTGTCTTTGATGAAGATAACCTGATTCCGTGCTTTGGATTTGGAGATGCATCTACGCATGACCAGGACGTCTTCAGTTTCTATGAGGACGACCAAAACTGTAATGGATTCGAGGAAGTATTGACGCGATATAGAGAGATCGTTCCCCATCTTCGACTTGCAGGACCTACATCTTTTGCACCCATTATTGAGATGGCCATGACTATTGTCGAGGAAAGCGGAGGCCAGTACCATGTCTTGCTGATCATTGCCGATGGGCAGGTGACAAGAAGTGTTGATACGCATCATGGTCATCTCAGCTCACAGGAACAAAAGACAGTTGATGCAATTGTAAAAGCAAGCGAGTACCCATTGTCTATAGTCTTAGTGGGAGTCGGAGATGGCCCTTGGGACATGATGAGGGAATTCGACGACAATATTCCTGCTCGAGCATTTGATAATTTTCAGTTTGTGAATTTTACCGAAATCATGTCAAGCAATGTAGATATATCCAGAAAGCAGAGAGAGTTTGCTCTTGCAGCCTTGATGGAAATACCTTCTCAGTACAAAGCAACCCTAGAGCTTGGAATATTGGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009308 GO:0009690 GO:0009850 GO:0009987 GO:0010817 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0034754 GO:0036211 GO:0042445 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0071944 GO:0080134 GO:0080148 GO:0140096 GO:1901564 GO:2000070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Copine zf-C3HC4_3

Protein Analysis

338

Amino Acids

37.68

Weight (kDa)

5.75

Isoelectric Point (pI)

41.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Copine	PF07002	123 - 334	1.4e-74	Copine

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007590)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67800 AT1G67800 AT1G67800 AT1G67800 AT1G67800 AT1G67800
fragaria_vesca	FvH4_4g25370
malus_domestica	MD13G1104400.v1.1 MD16G1104500.v1.1
prunus_persica	Prupe.1G242100_v2.0.a1 Prupe.1G242100_v2.0.a1 Prupe.1G242100_v2.0.a1
pyrus_communis	pycom13g09060
rosa_chinensis	RchiOBHm_Chr4g0432661
rosa_laevigata	RLG00000006825
rosa_multiflora	Rmu_sc0009481.1_g000002
rosa_roxburghii	Rroxscaffold_5G00374120
rosa_rugosa	Rorug04G0261200 Rorug04G0261300
rosa_samantha	Rh4AG315900 Rh4BG323900 Rh4CG338900 Rh4DG319300
rosa_wichuraiana	Rw4G027480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	685
AasI	GACNNNNNNGTC	1 cut(s)	503
AatII	GACGTC	1 cut(s)	507
Acc36I	ACCTGC	1 cut(s)	685
AccII	CGCG	1 cut(s)	562
AciI	CCGC	2 cut(s)	131, 654
AclWI	GGATC	1 cut(s)	61
AcoI	YGGCCR	1 cut(s)	630
AcsI	RAATTY	2 cut(s)	839, 889
AcuI	CTGAAG	1 cut(s)	493
AcyI	GRCGYC	1 cut(s)	504
AfaI	GTAC	3 cut(s)	665, 782, 980
AfiI	CCNNNNNNNGG	1 cut(s)	470
AjnI	CCWGG	1 cut(s)	498
AluBI	AGCT	6 cut(s)	15, 188, 281, 369, 735, 997
AluI	AGCT	6 cut(s)	15, 188, 281, 369, 735, 997
Alw26I	GTCTC	2 cut(s)	28, 177
AlwI	GGATC	1 cut(s)	61
Ama87I	CYCGRG	1 cut(s)	861
AoxI	GGCC	4 cut(s)	283, 630, 658, 817
ApeKI	GCWGC	3 cut(s)	133, 266, 953
ApoI	RAATTY	2 cut(s)	839, 889
AspS9I	GGNCC	2 cut(s)	599, 818
AsuHPI	GGTGA	2 cut(s)	350, 709
AvaI	CYCGRG	1 cut(s)	861
AvaII	GGWCC	1 cut(s)	599
BaeI	ACNNNNGTAYC	2 cut(s)	104, 137
BalI	TGGCCA	1 cut(s)	632
BarI	GAAGNNNNNNTAC	2 cut(s)	697, 729
BbsI	GAAGAC	1 cut(s)	499
BbvI	GCAGC	3 cut(s)	145, 253, 965
BccI	CCATC	7 cut(s)	106, 163, 591, 622, 683, 809, 955
BcgI	CGANNNNNNTGC	1 cut(s)	31
BciT130I	CCWGG	1 cut(s)	500
BclI	TGATCA	1 cut(s)	678
BcoDI	GTCTC	2 cut(s)	28, 177
BfaI	CTAG	2 cut(s)	287, 992
BfmI	CTRYAG	1 cut(s)	792
BfuAI	ACCTGC	1 cut(s)	685
BisI	GCNGC	3 cut(s)	134, 267, 954
BlsI	GCNGC	3 cut(s)	135, 268, 955
Bme1390I	CCNGG	1 cut(s)	500
Bme18I	GGWCC	1 cut(s)	599
BmeT110I	CYCGRG	1 cut(s)	861
BmgT120I	GGNCC	2 cut(s)	599, 818
BmrFI	CCNGG	1 cut(s)	500
BmsI	GCATC	7 cut(s)	145, 205, 382, 472, 494, 727, 748
BoxI	GACNNNNGTC	1 cut(s)	641
BpiI	GAAGAC	1 cut(s)	499
BpuEI	CTTGAG	1 cut(s)	208
BsaBI	GATNNNNATC	2 cut(s)	240, 717
BsaHI	GRCGYC	1 cut(s)	504
BsaJI	CCNNGG	1 cut(s)	821
BsaWI	WCCGGW	1 cut(s)	360
Bsc4I	CCNNNNNNNGG	1 cut(s)	470
Bse1I	ACTGG	2 cut(s)	179, 661
Bse3DI	GCAATG	3 cut(s)	337, 681, 919
Bse8I	GATNNNNATC	2 cut(s)	240, 717
BseBI	CCWGG	1 cut(s)	500
BseDI	CCNNGG	1 cut(s)	821
BseGI	GGATG	1 cut(s)	259
BseJI	GATNNNNATC	2 cut(s)	240, 717
BseLI	CCNNNNNNNGG	1 cut(s)	470
BseMI	GCAATG	3 cut(s)	337, 681, 919
BseMII	CTCAG	4 cut(s)	84, 188, 745, 989
BseNI	ACTGG	2 cut(s)	179, 661
BseXI	GCAGC	3 cut(s)	145, 253, 965
BseYI	CCCAGC	1 cut(s)	192
Bsh1236I	CGCG	1 cut(s)	562
BshFI	GGCC	4 cut(s)	285, 632, 660, 819
BsiHKCI	CYCGRG	1 cut(s)	861
BsiSI	CCGG	1 cut(s)	361
BslFI	GGGAC	1 cut(s)	839
BslI	CCNNNNNNNGG	1 cut(s)	470
BsmAI	GTCTC	2 cut(s)	28, 177
BsmFI	GGGAC	1 cut(s)	839
BsnI	GGCC	4 cut(s)	285, 632, 660, 819
BsoBI	CYCGRG	1 cut(s)	861
Bsp143I	GATC	4 cut(s)	53, 411, 573, 678
BspACI	CCGC	2 cut(s)	131, 654
BspANI	GGCC	4 cut(s)	285, 632, 660, 819
BspCNI	CTCAG	4 cut(s)	85, 187, 744, 988
BspFNI	CGCG	1 cut(s)	562
BspMI	ACCTGC	1 cut(s)	685
BspPI	GGATC	1 cut(s)	61
BsrDI	GCAATG	3 cut(s)	337, 681, 919
BsrI	ACTGG	2 cut(s)	179, 661
BssECI	CCNNGG	1 cut(s)	821
BssMI	GATC	4 cut(s)	53, 411, 573, 678
BssNI	GRCGYC	1 cut(s)	504
BssT1I	CCWWGG	1 cut(s)	821
Bst2UI	CCWGG	1 cut(s)	500
Bst4CI	ACNGT	4 cut(s)	39, 167, 536, 754
BstACI	GRCGYC	1 cut(s)	504
BstC8I	GCNNGC	3 cut(s)	283, 371, 775
BstDEI	CTNAG	5 cut(s)	93, 174, 731, 799, 975
BstF5I	GGATG	1 cut(s)	259
BstFNI	CGCG	1 cut(s)	562
BstKTI	GATC	4 cut(s)	56, 414, 576, 681
BstMAI	GTCTC	2 cut(s)	28, 177
BstMBI	GATC	4 cut(s)	53, 411, 573, 678
BstMWI	GCNNNNNNNGC	1 cut(s)	953
BstNI	CCWGG	1 cut(s)	500
BstPAI	GACNNNNGTC	1 cut(s)	641
BstSCI	CCNGG	1 cut(s)	498
BstSFI	CTRYAG	1 cut(s)	792
BstUI	CGCG	1 cut(s)	562
BstV1I	GCAGC	3 cut(s)	145, 253, 965
BstV2I	GAAGAC	1 cut(s)	499
BsuRI	GGCC	4 cut(s)	285, 632, 660, 819
BtgZI	GCGATG	1 cut(s)	122
BtsCI	GGATG	1 cut(s)	259
BveI	ACCTGC	1 cut(s)	685
Cac8I	GCNNGC	3 cut(s)	283, 371, 775
Cfr13I	GGNCC	2 cut(s)	599, 818
CseI	GACGC	1 cut(s)	568
Csp6I	GTAC	3 cut(s)	664, 781, 979
CviAII	CATG	8 cut(s)	72, 83, 494, 634, 668, 722, 829, 904
CviQI	GTAC	3 cut(s)	664, 781, 979
DdeI	CTNAG	5 cut(s)	93, 174, 731, 799, 975
DpnI	GATC	4 cut(s)	55, 413, 575, 680
DpnII	GATC	4 cut(s)	53, 411, 573, 678
DrdI	GACNNNNNNGTC	1 cut(s)	503
DseDI	GACNNNNNNGTC	1 cut(s)	503
EaeI	YGGCCR	1 cut(s)	630
Eco130I	CCWWGG	1 cut(s)	821
Eco47I	GGWCC	1 cut(s)	599
Eco57I	CTGAAG	1 cut(s)	493
Eco88I	CYCGRG	1 cut(s)	861
EcoO109I	RGGNCCY	1 cut(s)	599
EcoRI	GAATTC	1 cut(s)	839
EcoRII	CCWGG	1 cut(s)	498
EcoT14I	CCWWGG	1 cut(s)	821
EcoT22I	ATGCAT	1 cut(s)	487
ErhI	CCWWGG	1 cut(s)	821
FaeI	CATG	8 cut(s)	75, 86, 497, 637, 671, 725, 832, 907
FaqI	GGGAC	1 cut(s)	839
FatI	CATG	8 cut(s)	71, 82, 493, 633, 667, 721, 828, 903
FbaI	TGATCA	1 cut(s)	678
Fnu4HI	GCNGC	3 cut(s)	134, 267, 954
FokI	GGATG	1 cut(s)	266
Fsp4HI	GCNGC	3 cut(s)	134, 267, 954
FspBI	CTAG	2 cut(s)	287, 992
GluI	GCNGC	3 cut(s)	134, 267, 954
GsaI	CCCAGC	1 cut(s)	196
HaeIII	GGCC	4 cut(s)	285, 632, 660, 819
HapII	CCGG	1 cut(s)	361
HgaI	GACGC	1 cut(s)	568
Hin1I	GRCGYC	1 cut(s)	504
Hin1II	CATG	8 cut(s)	75, 86, 497, 637, 671, 725, 832, 907
HindIII	AAGCTT	1 cut(s)	367
HinfI	GANTC	6 cut(s)	23, 76, 290, 460, 543, 807
HpaII	CCGG	1 cut(s)	361
HphI	GGTGA	2 cut(s)	350, 709
Hpy166II	GTNNAC	1 cut(s)	339
Hpy188I	TCNGA	3 cut(s)	94, 303, 812
Hpy188III	TCNNGA	2 cut(s)	424, 927
Hpy8I	GTNNAC	1 cut(s)	339
Hpy99I	CGWCG	1 cut(s)	848
HpyAV	CCTTC	3 cut(s)	159, 195, 981
HpyCH4III	ACNGT	4 cut(s)	39, 167, 536, 754
HpyCH4IV	ACGT	1 cut(s)	504
HpyCH4V	TGCA	8 cut(s)	62, 211, 373, 485, 596, 614, 761, 953
HpyF10VI	GCNNNNNNNGC	1 cut(s)	953
HpyF3I	CTNAG	5 cut(s)	93, 174, 731, 799, 975
HpySE526I	ACGT	1 cut(s)	504
Hsp92I	GRCGYC	1 cut(s)	504
Hsp92II	CATG	8 cut(s)	75, 86, 497, 637, 671, 725, 832, 907
Ksp22I	TGATCA	1 cut(s)	678
Kzo9I	GATC	4 cut(s)	53, 411, 573, 678
LmnI	GCTCC	3 cut(s)	5, 151, 193
Lsp1109I	GCAGC	3 cut(s)	145, 253, 965
LweI	GCATC	7 cut(s)	145, 205, 382, 472, 494, 727, 748
MaeI	CTAG	2 cut(s)	287, 992
MaeII	ACGT	1 cut(s)	504
MaeIII	GTNAC	4 cut(s)	181, 218, 259, 697
MalI	GATC	4 cut(s)	55, 413, 575, 680
MboI	GATC	4 cut(s)	53, 411, 573, 678
MboII	GAAGA	4 cut(s)	60, 461, 499, 578
MfeI	CAATTG	1 cut(s)	762
MlsI	TGGCCA	1 cut(s)	632
MluCI	AATT	6 cut(s)	238, 417, 762, 839, 874, 889
MluNI	TGGCCA	1 cut(s)	632
MlyI	GAGTC	2 cut(s)	299, 816
MmeI	TCCRAC	1 cut(s)	790
MnlI	CCTC	9 cut(s)	44, 117, 250, 342, 514, 541, 640, 650, 828
Mox20I	TGGCCA	1 cut(s)	632
Mph1103I	ATGCAT	1 cut(s)	487
MscI	TGGCCA	1 cut(s)	632
MseI	TTAA	1 cut(s)	162
Msp20I	TGGCCA	1 cut(s)	632
MspI	CCGG	1 cut(s)	361
MspR9I	CCNGG	1 cut(s)	500
MunI	CAATTG	1 cut(s)	762
MvaI	CCWGG	1 cut(s)	500
MvnI	CGCG	1 cut(s)	562
MwoI	GCNNNNNNNGC	1 cut(s)	953
NdeII	GATC	4 cut(s)	53, 411, 573, 678
NlaIII	CATG	8 cut(s)	75, 86, 497, 637, 671, 725, 832, 907
NmuCI	GTSAC	1 cut(s)	697
NsiI	ATGCAT	1 cut(s)	487
PaeR7I	CTCGAG	1 cut(s)	861
PaqCI	CACCTGC	1 cut(s)	685
PcsI	WCGNNNNNNNCGW	1 cut(s)	23
PfeI	GAWTC	4 cut(s)	23, 76, 460, 543
PkrI	GCNGC	3 cut(s)	135, 268, 955
PleI	GAGTC	2 cut(s)	298, 815
PpsI	GAGTC	2 cut(s)	298, 815
PpuMI	RGGWCCY	1 cut(s)	599
PshAI	GACNNNNGTC	1 cut(s)	641
Psp5II	RGGWCCY	1 cut(s)	599
Psp6I	CCWGG	1 cut(s)	498
PspFI	CCCAGC	1 cut(s)	192
PspGI	CCWGG	1 cut(s)	498
PspPI	GGNCC	2 cut(s)	599, 818
PspPPI	RGGWCCY	1 cut(s)	599
PspXI	VCTCGAGB	1 cut(s)	861
RsaI	GTAC	3 cut(s)	665, 782, 980
RsaNI	GTAC	3 cut(s)	664, 781, 979
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	3 cut(s)	134, 267, 954
Sau3AI	GATC	4 cut(s)	53, 411, 573, 678
Sau96I	GGNCC	2 cut(s)	599, 818
SchI	GAGTC	2 cut(s)	299, 816
ScrFI	CCNGG	1 cut(s)	500
SfaNI	GCATC	7 cut(s)	145, 205, 382, 472, 494, 727, 748
SfcI	CTRYAG	1 cut(s)	792
Sfr274I	CTCGAG	1 cut(s)	861
SinI	GGWCC	1 cut(s)	599
SlaI	CTCGAG	1 cut(s)	861
SmlI	CTYRAG	2 cut(s)	223, 861
SmoI	CTYRAG	2 cut(s)	223, 861
Sse9I	AATT	6 cut(s)	238, 417, 762, 839, 874, 889
SsiI	CCGC	2 cut(s)	131, 654
SspI	AATATT	2 cut(s)	853, 1005
SspMI	CTAG	2 cut(s)	287, 992
StyD4I	CCNGG	1 cut(s)	498
StyI	CCWWGG	1 cut(s)	821
TaaI	ACNGT	4 cut(s)	39, 167, 536, 754
TaiI	ACGT	1 cut(s)	507
TaqI	TCGA	9 cut(s)	17, 26, 199, 347, 546, 589, 645, 843, 862
TasI	AATT	6 cut(s)	238, 417, 762, 839, 874, 889
TatI	WGTACW	1 cut(s)	978
TfiI	GAWTC	4 cut(s)	23, 76, 460, 543
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TseFI	GTSAC	1 cut(s)	697
TseI	GCWGC	3 cut(s)	133, 266, 953
Tsp45I	GTSAC	1 cut(s)	697
TspDTI	ATGAA	2 cut(s)	60, 462
TspGWI	ACGGA	1 cut(s)	453
VpaK11BI	GGWCC	1 cut(s)	599
XapI	RAATTY	2 cut(s)	839, 889
XcmI	CCANNNNNNNNNTGG	2 cut(s)	536, 625
XhoI	CTCGAG	1 cut(s)	861
XspI	CTAG	2 cut(s)	287, 992
ZraI	GACGTC	1 cut(s)	505
Zsp2I	ATGCAT	1 cut(s)	487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.